Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012280

Physical Location & Seq

Genomic Coordinates Reverse (-)

26192026 .. 26196011

Gene Structure 3986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1122000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCAGAAGAGGCAGGTCTTCCACCATCACCTGTTACATCTCAGTCAGGACAAGCATCTAATGGGATTCTTGATGTTAAGACCCAGGAAGCTCCAAAAGAGAACTCTATAGCAAGGAAAGAAACGCCTGAAATCGCTGCTTCCCAGAAAGCCCCCCATACATATGTTACCAGTACTGTTAAGAAGCCTCTTGGTGGTGCTAAGAAAATTGGGAAGACTGGGGGTCTTGGTGCTCGCAAACTTACTACAAAGCCAAATGAAAGCCTGTACGATCAGAAACCTGAAGATCCAGTTGTCCCACTGCCAGTGTCTTCCTCAACTAACAGCACTCCAACAGCTGGATCATCCTTTGCATCTCGCTTTGAGTATGTAGAAATTGTCCAAAATACTGAGACAAATCCCACTGGCGCTCATGTAATTAGCCATATTGCTCCACCAAAGTCATCAAATTTCTTTGCAGATTTTGGAATGGACAGTAACTTTCCCAAGAAAACTAGTTCAAATACCTCAAAAGTTCAAATTCAGGAGTCTGATGAAGCAAGAAAGAAATTCACAAATGCAAAATCTATCTCTTCCGCACAATTTTTTGGTGACCAAAGCAGATCTGCTGATGTTGATGCTCAAACCTCCTTGCAGAAGTTCTCGGGTTCTGCAGCCATCTCCAGCGCTGATCTATTTGGTGACAGGGGAGATAATTCAGCTATTGATCTTACTGCAAGCGACCTAATCAACCGACTGTCGTTTCAGGCACAACAGGATCTCTCTTCCTTAACGAATATCGCGGGAGAGACCGGGAAGAAGCTTAGTTCCTTGGCGTCCAATTTAATGACGGATCTTCAGGACAGAATCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

285

Amino Acids

30.05

Weight (kDa)

6.34

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17890 AT4G17890
fragaria_vesca	FvH4_5g22130
malus_domestica	MD00G1122000.v1.1 MD00G1183400.v1.1 MD06G1034600.v1.1
prunus_persica	Prupe.5G035300_v2.0.a1
pyrus_communis	pycom06g02860 pycom16g24390
rosa_chinensis	RchiOBHm_Chr7g0209771
rosa_laevigata	RLG00000003094
rosa_multiflora	Rmu_sc0001818.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248980
rosa_rugosa	Rorug07G0116100
rosa_samantha	Rh7AG249900 Rh7BG243800 Rh7CG265900 Rh7DG255700
rosa_wichuraiana	Rw7G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	338
AccII	CGCG	1 cut(s)	782
AciI	CCGC	2 cut(s)	576, 782
AclWI	GGATC	4 cut(s)	281, 349, 765, 840
AcsI	RAATTY	3 cut(s)	448, 519, 548
AcuI	CTGAAG	2 cut(s)	303, 821
AcyI	GRCGYC	1 cut(s)	815
AfaI	GTAC	2 cut(s)	175, 269
AfeI	AGCGCT	1 cut(s)	667
AfiI	CCNNNNNNNGG	2 cut(s)	194, 338
AgsI	TTSAA	2 cut(s)	501, 518
AhdI	GACNNNNNGTC	1 cut(s)	222
AhlI	ACTAGT	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	4 cut(s)	92, 338, 701, 802
AluI	AGCT	4 cut(s)	92, 338, 701, 802
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	386, 782
AlwI	GGATC	4 cut(s)	281, 349, 765, 840
Ama87I	CYCGRG	1 cut(s)	643
Aor51HI	AGCGCT	1 cut(s)	667
ApeKI	GCWGC	2 cut(s)	137, 653
ApoI	RAATTY	3 cut(s)	448, 519, 548
AspLEI	GCGC	2 cut(s)	410, 668
AsuC2I	CCSGG	1 cut(s)	793
AsuHPI	GGTGA	3 cut(s)	21, 602, 692
AvaI	CYCGRG	1 cut(s)	643
BbsI	GAAGAC	3 cut(s)	11, 221, 303
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	124, 665
BccI	CCATC	2 cut(s)	34, 665
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	793
BcoDI	GTCTC	2 cut(s)	386, 782
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	2 cut(s)	108, 651
BfoI	RGCGCY	2 cut(s)	411, 669
BfuAI	ACCTGC	1 cut(s)	5
BglII	AGATCT	1 cut(s)	602
BisI	GCNGC	2 cut(s)	138, 654
BlsI	GCNGC	2 cut(s)	139, 655
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	86, 793
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	643
BmrFI	CCNGG	2 cut(s)	86, 793
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	3 cut(s)	65, 362, 607
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	3 cut(s)	11, 221, 303
BpmI	CTGGAG	1 cut(s)	646
BpuMI	CCSGG	1 cut(s)	793
BsaHI	GRCGYC	1 cut(s)	815
BsaI	GGTCTC	1 cut(s)	782
BsaJI	CCNNGG	2 cut(s)	84, 810
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 338
Bse1I	ACTGG	5 cut(s)	171, 223, 290, 305, 409
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	84, 810
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	2 cut(s)	194, 338
BseMII	CTCAG	2 cut(s)	56, 381
BseNI	ACTGG	5 cut(s)	171, 223, 290, 305, 409
BseXI	GCAGC	2 cut(s)	124, 665
Bsh1236I	CGCG	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	643
BsiSI	CCGG	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	194, 338
BsmAI	GTCTC	2 cut(s)	386, 782
BsmFI	GGGAC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	8 cut(s)	271, 286, 341, 602, 670, 706, 757, 832
BspACI	CCGC	2 cut(s)	576, 782
BspCNI	CTCAG	2 cut(s)	55, 382
BspFNI	CGCG	1 cut(s)	782
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	4 cut(s)	281, 349, 765, 840
BspTNI	GGTCTC	1 cut(s)	782
BsrI	ACTGG	5 cut(s)	171, 223, 290, 305, 409
BssECI	CCNNGG	2 cut(s)	84, 810
BssMI	GATC	8 cut(s)	271, 286, 341, 602, 670, 706, 757, 832
BssNI	GRCGYC	1 cut(s)	815
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	178, 476, 738
Bst6I	CTCTTC	3 cut(s)	3, 577, 769
BstACI	GRCGYC	1 cut(s)	815
BstC8I	GCNNGC	2 cut(s)	235, 718
BstDEI	CTNAG	4 cut(s)	42, 201, 390, 803
BstEII	GGTNACC	1 cut(s)	590
BstF5I	GGATG	1 cut(s)	344
BstFNI	CGCG	1 cut(s)	782
BstH2I	RGCGCY	2 cut(s)	411, 669
BstHHI	GCGC	2 cut(s)	410, 668
BstKTI	GATC	8 cut(s)	274, 289, 344, 605, 673, 709, 760, 835
BstMAI	GTCTC	2 cut(s)	386, 782
BstMBI	GATC	8 cut(s)	271, 286, 341, 602, 670, 706, 757, 832
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	86
BstPI	GGTNACC	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	84, 791
BstSFI	CTRYAG	2 cut(s)	108, 651
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	2 cut(s)	124, 665
BstV2I	GAAGAC	3 cut(s)	11, 221, 303
BstX2I	RGATCY	4 cut(s)	286, 602, 757, 832
BstYI	RGATCY	4 cut(s)	286, 602, 757, 832
BtsCI	GGATG	1 cut(s)	344
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	3 cut(s)	299, 312, 402
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	235, 718
CfoI	GCGC	2 cut(s)	410, 668
CseI	GACGC	1 cut(s)	804
Csp6I	GTAC	2 cut(s)	174, 268
CviAII	CATG	1 cut(s)	413
CviQI	GTAC	2 cut(s)	174, 268
DdeI	CTNAG	4 cut(s)	42, 201, 390, 803
DpnI	GATC	8 cut(s)	273, 288, 343, 604, 672, 708, 759, 834
DpnII	GATC	8 cut(s)	271, 286, 341, 602, 670, 706, 757, 832
DriI	GACNNNNNGTC	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	3, 577, 769
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	3 cut(s)	3, 577, 769
Eco130I	CCWWGG	1 cut(s)	810
Eco31I	GGTCTC	1 cut(s)	782
Eco47III	AGCGCT	1 cut(s)	667
Eco57I	CTGAAG	2 cut(s)	303, 821
Eco88I	CYCGRG	1 cut(s)	643
Eco91I	GGTNACC	1 cut(s)	590
EcoO65I	GGTNACC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	810
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	1 cut(s)	416
FaiI	YATR	7 cut(s)	110, 159, 163, 165, 369, 414, 426
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	412
FauI	CCCGC	1 cut(s)	775
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	138, 654
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	2 cut(s)	138, 654
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	2 cut(s)	409, 667
GluI	GCNGC	2 cut(s)	138, 654
GsuI	CTGGAG	1 cut(s)	646
HaeII	RGCGCY	2 cut(s)	411, 669
HapII	CCGG	1 cut(s)	792
HgaI	GACGC	1 cut(s)	804
HhaI	GCGC	2 cut(s)	410, 668
Hin1I	GRCGYC	1 cut(s)	815
Hin1II	CATG	1 cut(s)	416
Hin6I	GCGC	2 cut(s)	408, 666
HinP1I	GCGC	2 cut(s)	408, 666
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	3 cut(s)	67, 527, 846
HpaII	CCGG	1 cut(s)	792
HphI	GGTGA	3 cut(s)	21, 602, 692
Hpy188I	TCNGA	2 cut(s)	276, 532
Hpy188III	TCNNGA	4 cut(s)	48, 71, 524, 839
HpyCH4III	ACNGT	3 cut(s)	178, 476, 738
HpyCH4V	TGCA	6 cut(s)	353, 458, 560, 634, 653, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	42, 201, 390, 803
Hsp92I	GRCGYC	1 cut(s)	815
Hsp92II	CATG	1 cut(s)	416
HspAI	GCGC	2 cut(s)	408, 666
Kzo9I	GATC	8 cut(s)	271, 286, 341, 602, 670, 706, 757, 832
LmnI	GCTCC	2 cut(s)	97, 436
Lsp1109I	GCAGC	2 cut(s)	124, 665
LweI	GCATC	3 cut(s)	65, 362, 607
MaeI	CTAG	1 cut(s)	495
MaeIII	GTNAC	5 cut(s)	34, 166, 476, 590, 680
MalI	GATC	8 cut(s)	273, 288, 343, 604, 672, 708, 759, 834
MboI	GATC	8 cut(s)	271, 286, 341, 602, 670, 706, 757, 832
MboII	GAAGA	9 cut(s)	11, 20, 226, 296, 303, 564, 756, 808, 827
MflI	RGATCY	4 cut(s)	286, 602, 757, 832
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	9 cut(s)	207, 375, 417, 448, 519, 548, 581, 694, 820
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	5 cut(s)	4, 198, 325, 517, 637
MseI	TTAA	4 cut(s)	78, 180, 770, 824
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	792
MspR9I	CCNGG	2 cut(s)	86, 793
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	793
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	8 cut(s)	271, 286, 341, 602, 670, 706, 757, 832
NlaIII	CATG	1 cut(s)	416
NmuCI	GTSAC	2 cut(s)	590, 680
PfeI	GAWTC	2 cut(s)	67, 846
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	139, 655
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	84
PspEI	GGTNACC	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	4 cut(s)	286, 602, 757, 832
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	2 cut(s)	175, 269
RsaNI	GTAC	2 cut(s)	174, 268
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	4 cut(s)	78, 180, 770, 824
SatI	GCNGC	2 cut(s)	138, 654
Sau3AI	GATC	8 cut(s)	271, 286, 341, 602, 670, 706, 757, 832
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	2 cut(s)	86, 793
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	3 cut(s)	65, 362, 607
SfcI	CTRYAG	2 cut(s)	108, 651
SmiMI	CAYNNNNRTG	1 cut(s)	162
SpeI	ACTAGT	1 cut(s)	494
Sse9I	AATT	9 cut(s)	207, 375, 417, 448, 519, 548, 581, 694, 820
SsiI	CCGC	2 cut(s)	576, 782
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	84, 791
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	3 cut(s)	178, 476, 738
TasI	AATT	9 cut(s)	207, 375, 417, 448, 519, 548, 581, 694, 820
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	67, 846
Tru1I	TTAA	4 cut(s)	78, 180, 770, 824
Tru9I	TTAA	4 cut(s)	78, 180, 770, 824
TscAI	CASTG	3 cut(s)	306, 312, 409
TseFI	GTSAC	2 cut(s)	590, 680
TseI	GCWGC	2 cut(s)	137, 653
Tsp45I	GTSAC	2 cut(s)	590, 680
TspDTI	ATGAA	2 cut(s)	273, 549
TspGWI	ACGGA	1 cut(s)	845
TspRI	CASTG	3 cut(s)	306, 312, 409
Van91I	CCANNNNNTGG	1 cut(s)	338
XapI	RAATTY	3 cut(s)	448, 519, 548
XspI	CTAG	1 cut(s)	495
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.