Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001818.1

Orthogroup ID

OG0012280

Physical Location & Seq

Genomic Coordinates Reverse (-)

35392 .. 40474

Gene Structure 5083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001818.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggcgtccgagattttcaatgacaagaatgctgttttcaaaaagctgaaatccaagtcggagaacaagatgtgcttcgattgtaacgcgaagaacccaacttgggcttcagttacatacgggatctttctctgcatcgattgctcggccgtccatcgcagtctcggcgttcacatcagctttgttagatctacgaatttagactcctggactcctgaacagctgagaacaatgacctttgggggaaataatcgcgcacaggttttctttaaacagcatggatggacagatggaggcaaaattgaggccaaatatacatcacgagctgctgagttatataggcagatactttctaaagaagtagcaaaaagtatggcagaagacgcaggtcttccaccatcacctgttgcgtctcagtcgggacaagcatctaatgggcttcctgatatcaagaccagtgaagcaataaaagaaaagcctatagcaaggcaagaaacacctgaagtttctgattcccccaaagccccccatgtatttgtcaccagtaccgtcaagaagccccttggtgctaagaaaagtgggaaaactgggggacttggtgctcgcaaactcactacaaagccaaatgaaagtctgtatgatcagaagcctgaagaaccagttatcccagtagtttcctcaaccaaaagcactccaccagctgtcacaccccttgcttctcgatttgagtatgtagaagctcttcaaactactgatataaattctaacggcgctagtgtaactggccatgtttctgcacccaagtcatcgagtttctttgcggatttcggaatggatagcagttatcccaagagaactagttcaaactcctcaaaagtgcaaattcaggaaactgatgaggcaaggaagaaattcacaaatgcaaaatctatttcttccgcacaatttttcggtgatcagggcaaatctgctgacgttgatgctcaagcctccttgcagaagttttctggttctgctgccatctccagtgctgaccttttcggtgacagagaagatatccctcttgatcttactgcgggtgaccttattaaccgtctatcttttcaggcacagcaggatatctcctctttaaaaaatattgcaggagagaccgggaagaagcttagctccttggcatccaatttaatgacagatcttcaggacagaatcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

404

Amino Acids

43.56

Weight (kDa)

8.92

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17890 AT4G17890
fragaria_vesca	FvH4_5g22130
malus_domestica	MD00G1122000.v1.1 MD00G1183400.v1.1 MD06G1034600.v1.1
prunus_persica	Prupe.5G035300_v2.0.a1
pyrus_communis	pycom06g02860 pycom16g24390
rosa_chinensis	RchiOBHm_Chr7g0209771
rosa_laevigata	RLG00000003094
rosa_multiflora	Rmu_sc0001818.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248980
rosa_rugosa	Rorug07G0116100
rosa_samantha	Rh7AG249900 Rh7BG243800 Rh7CG265900 Rh7DG255700
rosa_wichuraiana	Rw7G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AccII	CGCG	2 cut(s)	89, 255
AciI	CCGC	3 cut(s)	821, 939, 1076
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	2 cut(s)	147, 784
AcsI	RAATTY	4 cut(s)	196, 760, 882, 911
AcuI	CTGAAG	4 cut(s)	93, 522, 672, 1181
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	19, 40, 746, 864
AhlI	ACTAGT	1 cut(s)	857
AjnI	CCWGG	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AloI	GAACNNNNNNTCC	2 cut(s)	648, 680
AluBI	AGCT	8 cut(s)	46, 180, 223, 326, 701, 740, 1162, 1167
AluI	AGCT	8 cut(s)	46, 180, 223, 326, 701, 740, 1162, 1167
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	3 cut(s)	167, 417, 1142
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	3 cut(s)	147, 306, 784
ApeKI	GCWGC	2 cut(s)	326, 1016
ApoI	RAATTY	4 cut(s)	196, 760, 882, 911
Asp700I	GAANNNNTTC	3 cut(s)	741, 859, 911
AspLEI	GCGC	2 cut(s)	257, 773
AsuC2I	CCSGG	1 cut(s)	1153
AsuHPI	GGTGA	5 cut(s)	393, 532, 965, 1055, 1091
BalI	TGGCCA	1 cut(s)	786
BarI	GAAGNNNNNNTAC	2 cut(s)	726, 758
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	2 cut(s)	383, 387
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	2 cut(s)	313, 1003
BccI	CCATC	5 cut(s)	162, 276, 284, 406, 1028
BceAI	ACGGC	2 cut(s)	134, 784
BciT130I	CCWGG	1 cut(s)	208
BclI	TGATCA	2 cut(s)	640, 955
BcnI	CCSGG	1 cut(s)	1153
BcoDI	GTCTC	3 cut(s)	167, 417, 1142
BcuI	ACTAGT	1 cut(s)	857
BfaI	CTAG	2 cut(s)	774, 858
BfmI	CTRYAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	774
BfuAI	ACCTGC	1 cut(s)	377
BglII	AGATCT	2 cut(s)	188, 1192
BisI	GCNGC	2 cut(s)	327, 1017
BlpI	GCTNAGC	1 cut(s)	1163
BlsI	GCNGC	2 cut(s)	328, 1018
Bme1390I	CCNGG	2 cut(s)	208, 1153
BmrFI	CCNGG	2 cut(s)	208, 1153
BmrI	ACTGGG	2 cut(s)	597, 662
BmsI	GCATC	4 cut(s)	144, 437, 970, 1184
BmuI	ACTGGG	2 cut(s)	597, 662
BoxI	GACNNNNGTC	1 cut(s)	387
BpiI	GAAGAC	2 cut(s)	383, 387
BpmI	CTGGAG	1 cut(s)	1009
Bpu1102I	GCTNAGC	1 cut(s)	1163
BpuEI	CTTGAG	1 cut(s)	969
BpuMI	CCSGG	1 cut(s)	1153
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	1142
BsaJI	CCNNGG	2 cut(s)	562, 1170
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	7 cut(s)	456, 543, 592, 659, 668, 787, 1026
BseBI	CCWGG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	562, 1170
BseGI	GGATG	2 cut(s)	287, 1175
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	3 cut(s)	215, 321, 428
BseNI	ACTGG	7 cut(s)	456, 543, 592, 659, 668, 787, 1026
BseRI	GAGGAG	2 cut(s)	859, 1114
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	313, 1003
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	2 cut(s)	89, 255
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	149, 308, 786
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	1152
BslFI	GGGAC	2 cut(s)	435, 606
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	3 cut(s)	167, 417, 1142
BsmBI	CGTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	435, 606
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	149, 308, 786
Bso31I	GGTCTC	1 cut(s)	1142
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	6 cut(s)	123, 188, 640, 955, 1066, 1192
Bsp1720I	GCTNAGC	1 cut(s)	1163
BspACI	CCGC	3 cut(s)	821, 939, 1076
BspANI	GGCC	3 cut(s)	149, 308, 786
BspCNI	CTCAG	3 cut(s)	216, 322, 427
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	89, 255
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	131
BspQI	GCTCTTC	1 cut(s)	747
BspTNI	GGTCTC	1 cut(s)	1142
BsrI	ACTGG	7 cut(s)	456, 543, 592, 659, 668, 787, 1026
BssECI	CCNNGG	2 cut(s)	562, 1170
BssMI	GATC	6 cut(s)	123, 188, 640, 955, 1066, 1192
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	2 cut(s)	562, 1170
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	2 cut(s)	550, 1094
Bst6I	CTCTTC	1 cut(s)	747
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	604
BstDEI	CTNAG	5 cut(s)	224, 330, 414, 570, 1163
BstEII	GGTNACC	1 cut(s)	1079
BstF5I	GGATG	2 cut(s)	287, 1175
BstFNI	CGCG	2 cut(s)	89, 255
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	2 cut(s)	257, 773
BstKTI	GATC	6 cut(s)	126, 191, 643, 958, 1069, 1195
BstMAI	GTCTC	3 cut(s)	167, 417, 1142
BstMBI	GATC	6 cut(s)	123, 188, 640, 955, 1066, 1192
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 165, 383
BstNI	CCWGG	1 cut(s)	208
BstPAI	GACNNNNGTC	1 cut(s)	387
BstPI	GGTNACC	1 cut(s)	1079
BstSCI	CCNGG	2 cut(s)	206, 1151
BstSFI	CTRYAG	1 cut(s)	480
BstUI	CGCG	2 cut(s)	89, 255
BstV1I	GCAGC	2 cut(s)	313, 1003
BstV2I	GAAGAC	2 cut(s)	383, 387
BstX2I	RGATCY	3 cut(s)	123, 188, 1192
BstYI	RGATCY	3 cut(s)	123, 188, 1192
BstZI	CGGCCG	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	149, 308, 786
BsuTUI	ATCGAT	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	287, 1175
BtsIMutI	CAGTG	2 cut(s)	463, 1033
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	604
CfoI	GCGC	2 cut(s)	257, 773
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	2 cut(s)	392, 399
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	3 cut(s)	278, 530, 788
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	5 cut(s)	224, 330, 414, 570, 1163
DpnI	GATC	6 cut(s)	125, 190, 642, 957, 1068, 1194
DpnII	GATC	6 cut(s)	123, 188, 640, 955, 1066, 1192
DraI	TTTAAA	2 cut(s)	271, 1131
EaeI	YGGCCR	2 cut(s)	147, 784
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	562, 1170
Eco31I	GGTCTC	1 cut(s)	1142
Eco32I	GATATC	3 cut(s)	448, 1057, 1120
Eco52I	CGGCCG	1 cut(s)	147
Eco57I	CTGAAG	4 cut(s)	93, 522, 672, 1181
Eco91I	GGTNACC	1 cut(s)	1079
EcoO65I	GGTNACC	1 cut(s)	1079
EcoRII	CCWGG	1 cut(s)	206
EcoRV	GATATC	3 cut(s)	448, 1057, 1120
EcoT14I	CCWWGG	2 cut(s)	562, 1170
ErhI	CCWWGG	2 cut(s)	562, 1170
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	3 cut(s)	281, 533, 791
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	2 cut(s)	435, 606
FatI	CATG	3 cut(s)	277, 529, 787
FauI	CCCGC	1 cut(s)	1069
FbaI	TGATCA	2 cut(s)	640, 955
Fnu4HI	GCNGC	2 cut(s)	327, 1017
FokI	GGATG	2 cut(s)	294, 1162
Fsp4HI	GCNGC	2 cut(s)	327, 1017
FspBI	CTAG	2 cut(s)	774, 858
GlaI	GCGC	2 cut(s)	256, 772
GluI	GCNGC	2 cut(s)	327, 1017
GsuI	CTGGAG	1 cut(s)	1009
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	3 cut(s)	149, 308, 786
HapII	CCGG	1 cut(s)	1152
HgaI	GACGC	2 cut(s)	392, 399
HhaI	GCGC	2 cut(s)	257, 773
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	281, 533, 791
Hin6I	GCGC	2 cut(s)	255, 771
HinP1I	GCGC	2 cut(s)	255, 771
HindIII	AAGCTT	1 cut(s)	1160
HinfI	GANTC	4 cut(s)	203, 211, 512, 1206
HpaII	CCGG	1 cut(s)	1152
HphI	GGTGA	5 cut(s)	393, 532, 965, 1055, 1091
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	6 cut(s)	10, 61, 511, 645, 830, 1214
Hpy8I	GTNNAC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	550, 1094
HpyCH4IV	ACGT	1 cut(s)	975
HpyCH4V	TGCA	6 cut(s)	135, 797, 880, 923, 997, 1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 165, 383
HpyF3I	CTNAG	5 cut(s)	224, 330, 414, 570, 1163
HpySE526I	ACGT	1 cut(s)	975
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	281, 533, 791
HspAI	GCGC	2 cut(s)	255, 771
Ksp22I	TGATCA	2 cut(s)	640, 955
Kzo9I	GATC	6 cut(s)	123, 188, 640, 955, 1066, 1192
LguI	GCTCTTC	1 cut(s)	747
LmnI	GCTCC	1 cut(s)	1172
Lsp1109I	GCAGC	2 cut(s)	313, 1003
LweI	GCATC	4 cut(s)	144, 437, 970, 1184
MaeI	CTAG	2 cut(s)	774, 858
MaeII	ACGT	1 cut(s)	975
MaeIII	GTNAC	7 cut(s)	83, 112, 538, 703, 778, 1043, 1079
MalI	GATC	6 cut(s)	125, 190, 642, 957, 1068, 1194
MboI	GATC	6 cut(s)	123, 188, 640, 955, 1066, 1192
MflI	RGATCY	3 cut(s)	123, 188, 1192
MhlI	GDGCHC	1 cut(s)	604
MlsI	TGGCCA	1 cut(s)	786
MluCI	AATT	7 cut(s)	196, 300, 760, 882, 911, 944, 1180
MluNI	TGGCCA	1 cut(s)	786
MlyI	GAGTC	2 cut(s)	197, 205
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	8 cut(s)	287, 298, 688, 880, 892, 1000, 1071, 1135
Mox20I	TGGCCA	1 cut(s)	786
MroXI	GAANNNNTTC	3 cut(s)	741, 859, 911
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	4 cut(s)	270, 1089, 1130, 1184
Msp20I	TGGCCA	1 cut(s)	786
MspA1I	CMGCKG	2 cut(s)	223, 701
MspI	CCGG	1 cut(s)	1152
MspR9I	CCNGG	2 cut(s)	208, 1153
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	2 cut(s)	89, 255
MwoI	GCNNNNNNNGC	3 cut(s)	141, 165, 383
NciI	CCSGG	1 cut(s)	1153
NdeII	GATC	6 cut(s)	123, 188, 640, 955, 1066, 1192
NlaIII	CATG	3 cut(s)	281, 533, 791
NmeAIII	GCCGAG	2 cut(s)	125, 144
NmuCI	GTSAC	4 cut(s)	538, 703, 1043, 1079
PciSI	GCTCTTC	1 cut(s)	747
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	3 cut(s)	741, 859, 911
PfeI	GAWTC	2 cut(s)	512, 1206
PfoI	TCCNGGA	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	328, 1018
PleI	GAGTC	2 cut(s)	197, 205
PpsI	GAGTC	2 cut(s)	197, 205
PshAI	GACNNNNGTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	206
PspEI	GGTNACC	1 cut(s)	1079
PspGI	CCWGG	1 cut(s)	206
PsuI	RGATCY	3 cut(s)	123, 188, 1192
PvuII	CAGCTG	2 cut(s)	223, 701
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	747
SaqAI	TTAA	4 cut(s)	270, 1089, 1130, 1184
SatI	GCNGC	2 cut(s)	327, 1017
Sau3AI	GATC	6 cut(s)	123, 188, 640, 955, 1066, 1192
SchI	GAGTC	2 cut(s)	197, 205
ScrFI	CCNGG	2 cut(s)	208, 1153
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	4 cut(s)	144, 437, 970, 1184
SfcI	CTRYAG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
SpeI	ACTAGT	1 cut(s)	857
Sse9I	AATT	7 cut(s)	196, 300, 760, 882, 911, 944, 1180
SsiI	CCGC	3 cut(s)	821, 939, 1076
SspI	AATATT	1 cut(s)	1138
SspMI	CTAG	2 cut(s)	774, 858
StyD4I	CCNGG	2 cut(s)	206, 1151
StyI	CCWWGG	2 cut(s)	562, 1170
TaaI	ACNGT	2 cut(s)	550, 1094
TaiI	ACGT	1 cut(s)	978
TaqI	TCGA	4 cut(s)	78, 138, 721, 809
TasI	AATT	7 cut(s)	196, 300, 760, 882, 911, 944, 1180
TfiI	GAWTC	2 cut(s)	512, 1206
Tru1I	TTAA	4 cut(s)	270, 1089, 1130, 1184
Tru9I	TTAA	4 cut(s)	270, 1089, 1130, 1184
TscAI	CASTG	2 cut(s)	463, 1033
TseFI	GTSAC	4 cut(s)	538, 703, 1043, 1079
TseI	GCWGC	2 cut(s)	326, 1016
Tsp45I	GTSAC	4 cut(s)	538, 703, 1043, 1079
TspDTI	ATGAA	1 cut(s)	642
TspRI	CASTG	2 cut(s)	463, 1033
XapI	RAATTY	4 cut(s)	196, 760, 882, 911
XmnI	GAANNNNTTC	3 cut(s)	741, 859, 911
XspI	CTAG	2 cut(s)	774, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.