AT4G17950

DNA-binding family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013533
Physical Location & Seq
Reverse (-)
9966720 .. 9969232
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17950.1

Sequence Viewer

Length: 1320 bp
ATGGATTCCAGAGAGATCCACCACCAACAACAGCAACAACAACAACAACAACAGCAGCAGCAGCAACAACAGCAACATCTACAACAACAGCAACAACCACCGCCAGGGATGTTAATGAGTCACCACAATTCCTACAATCGAAACCCTAACGCCGCCGCCGCTGTTTTAATGGGTCACAACACCTCCACATCTCAAGCTATGCATCAAAGATTACCTTTTGGTGGTTCTATGTCACCGCATCAGCCTCAACAACATCAGTATCATCATCCTCAGCCTCAGCAACAGATAGATCAGAAGACTCTTGAATCTCTTGGATTTGATGGATCGCCTTCTTCTGTTGCCGCCACTCAACAACATTCGATGAGATTTGGGATCGACCATCAACAGGTTAAGAAGAAACGAGGTAGACCTAGGAAGTATGCTGCTGATGGTGGTGGTGGTGGTGGTGGTGGTAGTAACATTGCTCTTGGTTTGGCTCCTACTTCGCCTCTTCCTTCTGCTTCTAATTCTTACGGTGGTGGAAATGAAGGAGGTGGTGGTGGTGATAGCGCCGGAGCTAATGCTAACTCTTCCGATCCACCTGCTAAACGGAACAGAGGACGTCCTCCTGGCTCCGGTAAGAAGCAGCTCGATGCTTTAGGAGGAACAGGAGGAGTTGGGTTCACGCCTCATGTCATTGAGGTTAAAACAGGAGAGGACATAGCTACGAAGATATTGGCGTTTACGAACCAAGGGCCACGCGCAATCTGTATTCTCTCAGCTACAGGAGCTGTAACTAATGTGATGCTTCGTCAAGCTAACAATAGCAATCCTACTGGAACTGTTAAGTATGAGGGCCGATTTGAAATCATTTCTCTGTCAGGTTCTTTCTTGAATTCTGAGAGTAATGGTACTGTGACCAAAACTGGTAACTTGAGTGTGTCGCTGGCTGGACACGAAGGCCGGATTGTGGGTGGATGTGTTGATGGAATGCTAGTAGCTGGATCACAAGTCCAGGTCATTGTGGGAAGCTTTGTACCAGATGGAAGGAAGCAGAAACAAAGTGCGGGGCGTGCTCAGAATACTCCGGAGCCAGCTTCAGCACCAGCCAATATGTTGAGCTTTGGTGGTGTTGGTGGACCGGGAAGCCCTCGATCTCAAGGACAACAACACTCGAGCGAGTCATCAGAGGAAAACGAAAGTAATTCTCCGTTGCACCGTAGAAGCAACAACAACAACAGCAACAATCATGGGATATTTGGAAACTCTACACCTCAACCGCTTCACCAAATTCCTATGCAGATGTACCAGAATCTCTGGCCTGGCAACAGTCCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

439

Amino Acids

46.28

Weight (kDa)

9.56

Isoelectric Point (pI)

62.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 222 - 339 9e-26 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17950 AT5G46640
fragaria_vesca FvH4_5g22000
malus_domestica MD06G1033700.v1.1 MD16G1274800.v1.1
prunus_persica Prupe.5G037000_v2.0.a1
pyrus_communis pycom06g02780 pycom16g24490
rosa_chinensis RchiOBHm_Chr7g0209501
rosa_laevigata RLG00000003123
rosa_multiflora Rmu_sc0000243.1_g000005
rosa_roxburghii Rroxscaffold_3G00249310
rosa_rugosa Rorug07G0114000
rosa_samantha Rh7AG248000 Rh7BG242500 Rh7CG263500 Rh7DG254100
rosa_wichuraiana Rw7G020930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 589
AatII GACGTC 1 cut(s) 604
Acc36I ACCTGC 1 cut(s) 589
AccI GTMKAC 1 cut(s) 406
AccII CGCG 1 cut(s) 741
AccIII TCCGGA 1 cut(s) 1066
AciI CCGC 8 cut(s) 101, 153, 156, 159, 236, 342, 1046, 1259
AclWI GGATC 5 cut(s) 10, 331, 380, 569, 991
AcsI RAATTY 2 cut(s) 874, 1269
AcuI CTGAAG 1 cut(s) 1062
AcyI GRCGYC 1 cut(s) 601
AfaI GTAC 3 cut(s) 892, 1017, 1286
AfiI CCNNNNNNNGG 5 cut(s) 104, 221, 385, 614, 949
AgsI TTSAA 3 cut(s) 305, 845, 874
AjnI CCWGG 4 cut(s) 103, 607, 993, 1300
Alw21I GWGCWC 1 cut(s) 1057
AlwI GGATC 5 cut(s) 10, 331, 380, 569, 991
AlwNI CAGNNNCTG 1 cut(s) 770
Ama87I CYCGRG 1 cut(s) 1153
Aor13HI TCCGGA 1 cut(s) 1066
AoxI GGCC 4 cut(s) 734, 835, 940, 1298
ApeKI GCWGC 5 cut(s) 55, 58, 61, 422, 625
ApoI RAATTY 2 cut(s) 874, 1269
AspA2I CCTAGG 1 cut(s) 410
AspLEI GCGC 2 cut(s) 551, 743
AspS9I GGNCC 3 cut(s) 734, 835, 1118
AsuC2I CCSGG 1 cut(s) 1122
AsuHPI GGTGA 4 cut(s) 113, 225, 554, 1256
AvaI CYCGRG 1 cut(s) 1153
AvaII GGWCC 1 cut(s) 1118
AvrII CCTAGG 1 cut(s) 410
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BbsI GAAGAC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 1057
BbvCI CCTCAGC 2 cut(s) 270, 276
BbvI GCAGC 5 cut(s) 67, 70, 73, 409, 637
BccI CCATC 5 cut(s) 314, 387, 422, 959, 1016
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 4 cut(s) 105, 609, 995, 1302
BcnI CCSGG 1 cut(s) 1122
BfaI CTAG 2 cut(s) 411, 974
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 589
BisI GCNGC 9 cut(s) 56, 59, 62, 153, 156, 159, 342, 423, 626
BlnI CCTAGG 1 cut(s) 410
BlsI GCNGC 9 cut(s) 57, 60, 63, 154, 157, 160, 343, 424, 627
Bme1390I CCNGG 5 cut(s) 105, 609, 995, 1122, 1302
Bme18I GGWCC 1 cut(s) 1118
BmeT110I CYCGRG 1 cut(s) 1153
BmgT120I GGNCC 3 cut(s) 734, 835, 1118
BmiI GGNNCC 3 cut(s) 477, 613, 1071
BmrFI CCNGG 5 cut(s) 105, 609, 995, 1122, 1302
BmsI GCATC 4 cut(s) 211, 247, 622, 774
BpiI GAAGAC 1 cut(s) 302
Bpu10I CCTNAGC 2 cut(s) 270, 276
BpuEI CTTGAG 3 cut(s) 177, 934, 1122
BpuMI CCSGG 1 cut(s) 1122
BsaHI GRCGYC 1 cut(s) 601
BsaJI CCNNGG 3 cut(s) 104, 410, 730
BsaWI WCCGGW 2 cut(s) 614, 1066
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 5 cut(s) 104, 221, 385, 614, 949
Bse1I ACTGG 2 cut(s) 820, 910
Bse3DI GCAATG 1 cut(s) 459
BseAI TCCGGA 1 cut(s) 1066
BseBI CCWGG 4 cut(s) 105, 609, 995, 1302
BseDI CCNNGG 3 cut(s) 104, 410, 730
BseGI GGATG 3 cut(s) 114, 265, 962
BseLI CCNNNNNNNGG 5 cut(s) 104, 221, 385, 614, 949
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 5 cut(s) 284, 290, 771, 870, 1070
BseNI ACTGG 2 cut(s) 820, 910
BseRI GAGGAG 1 cut(s) 666
BseXI GCAGC 5 cut(s) 67, 70, 73, 409, 637
Bsh1236I CGCG 1 cut(s) 741
BshFI GGCC 4 cut(s) 736, 837, 942, 1300
BsiHKAI GWGCWC 1 cut(s) 1057
BsiHKCI CYCGRG 1 cut(s) 1153
BsiSI CCGG 5 cut(s) 552, 615, 943, 1067, 1121
BslI CCNNNNNNNGG 5 cut(s) 104, 221, 385, 614, 949
BsmI GAATGC 1 cut(s) 975
BsnI GGCC 4 cut(s) 736, 837, 942, 1300
BsoBI CYCGRG 1 cut(s) 1153
Bsp1286I GDGCHC 1 cut(s) 1057
Bsp13I TCCGGA 1 cut(s) 1066
Bsp143I GATC 7 cut(s) 15, 289, 323, 372, 574, 983, 1133
BspACI CCGC 8 cut(s) 101, 153, 156, 159, 236, 342, 1046, 1259
BspANI GGCC 4 cut(s) 736, 837, 942, 1300
BspCNI CTCAG 5 cut(s) 283, 289, 770, 871, 1069
BspEI TCCGGA 1 cut(s) 1066
BspFNI CGCG 1 cut(s) 741
BspLI GGNNCC 3 cut(s) 477, 613, 1071
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 5 cut(s) 10, 331, 380, 569, 991
BsrDI GCAATG 1 cut(s) 459
BsrI ACTGG 2 cut(s) 820, 910
BssECI CCNNGG 3 cut(s) 104, 410, 730
BssMI GATC 7 cut(s) 15, 289, 323, 372, 574, 983, 1133
BssNI GRCGYC 1 cut(s) 601
BssT1I CCWWGG 2 cut(s) 410, 730
Bst2UI CCWGG 4 cut(s) 105, 609, 995, 1302
Bst4CI ACNGT 5 cut(s) 515, 823, 895, 1199, 1310
Bst6I CTCTTC 2 cut(s) 495, 574
BstACI GRCGYC 1 cut(s) 601
BstC8I GCNNGC 3 cut(s) 927, 1053, 1074
BstDEI CTNAG 5 cut(s) 270, 276, 757, 879, 1056
BstF5I GGATG 3 cut(s) 114, 265, 962
BstFNI CGCG 1 cut(s) 741
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 2 cut(s) 551, 743
BstKTI GATC 7 cut(s) 18, 292, 326, 375, 577, 986, 1136
BstMBI GATC 7 cut(s) 15, 289, 323, 372, 574, 983, 1133
BstMWI GCNNNNNNNGC 5 cut(s) 61, 70, 158, 767, 1052
BstNI CCWGG 4 cut(s) 105, 609, 995, 1302
BstSCI CCNGG 5 cut(s) 103, 607, 993, 1120, 1300
BstSFI CTRYAG 1 cut(s) 762
BstUI CGCG 1 cut(s) 741
BstV1I GCAGC 5 cut(s) 67, 70, 73, 409, 637
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 4 cut(s) 736, 837, 942, 1300
BtsCI GGATG 3 cut(s) 114, 265, 962
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 3 cut(s) 927, 1053, 1074
CaiI CAGNNNCTG 1 cut(s) 770
CfoI GCGC 2 cut(s) 551, 743
Cfr13I GGNCC 3 cut(s) 734, 835, 1118
Csp6I GTAC 3 cut(s) 891, 1016, 1285
CviAII CATG 2 cut(s) 671, 1229
CviQI GTAC 3 cut(s) 891, 1016, 1285
DdeI CTNAG 5 cut(s) 270, 276, 757, 879, 1056
DpnI GATC 7 cut(s) 17, 291, 325, 374, 576, 985, 1135
DpnII GATC 7 cut(s) 15, 289, 323, 372, 574, 983, 1133
Eam1104I CTCTTC 2 cut(s) 495, 574
EarI CTCTTC 2 cut(s) 495, 574
Eco130I CCWWGG 2 cut(s) 410, 730
Eco47I GGWCC 1 cut(s) 1118
Eco57I CTGAAG 1 cut(s) 1062
Eco88I CYCGRG 1 cut(s) 1153
EcoRI GAATTC 1 cut(s) 874
EcoRII CCWGG 4 cut(s) 103, 607, 993, 1300
EcoT14I CCWWGG 2 cut(s) 410, 730
EcoT22I ATGCAT 1 cut(s) 204
ErhI CCWWGG 2 cut(s) 410, 730
FaeI CATG 2 cut(s) 674, 1232
FaiI YATR 9 cut(s) 200, 230, 420, 672, 701, 831, 1094, 1230, 1277
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FatI CATG 2 cut(s) 670, 1228
FauI CCCGC 1 cut(s) 1039
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 9 cut(s) 56, 59, 62, 153, 156, 159, 342, 423, 626
FokI GGATG 3 cut(s) 121, 252, 969
Fsp4HI GCNGC 9 cut(s) 56, 59, 62, 153, 156, 159, 342, 423, 626
FspBI CTAG 2 cut(s) 411, 974
GlaI GCGC 2 cut(s) 550, 742
GluI GCNGC 9 cut(s) 56, 59, 62, 153, 156, 159, 342, 423, 626
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 4 cut(s) 736, 837, 942, 1300
HapII CCGG 5 cut(s) 552, 615, 943, 1067, 1121
HhaI GCGC 2 cut(s) 551, 743
Hin1I GRCGYC 1 cut(s) 601
Hin1II CATG 2 cut(s) 674, 1232
Hin6I GCGC 2 cut(s) 549, 741
HinP1I GCGC 2 cut(s) 549, 741
HindIII AAGCTT 1 cut(s) 1009
HinfI GANTC 6 cut(s) 5, 118, 298, 305, 1160, 1291
HpaII CCGG 5 cut(s) 552, 615, 943, 1067, 1121
HphI GGTGA 4 cut(s) 113, 225, 554, 1256
Hpy166II GTNNAC 4 cut(s) 407, 663, 723, 1118
Hpy188I TCNGA 5 cut(s) 294, 574, 880, 1059, 1168
Hpy188III TCNNGA 4 cut(s) 9, 302, 871, 1067
Hpy8I GTNNAC 4 cut(s) 407, 663, 723, 1118
HpyAV CCTTC 5 cut(s) 339, 504, 521, 932, 1020
HpyCH4III ACNGT 5 cut(s) 515, 823, 895, 1199, 1310
HpyCH4IV ACGT 1 cut(s) 601
HpyCH4V TGCA 3 cut(s) 202, 1195, 1279
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 70, 158, 767, 1052
HpyF3I CTNAG 5 cut(s) 270, 276, 757, 879, 1056
HpySE526I ACGT 1 cut(s) 601
Hsp92I GRCGYC 1 cut(s) 601
Hsp92II CATG 2 cut(s) 674, 1232
HspAI GCGC 2 cut(s) 549, 741
Kpn2I TCCGGA 1 cut(s) 1066
Kzo9I GATC 7 cut(s) 15, 289, 323, 372, 574, 983, 1133
LmnI GCTCC 5 cut(s) 481, 554, 617, 767, 1069
Lsp1109I GCAGC 5 cut(s) 67, 70, 73, 409, 637
LweI GCATC 4 cut(s) 211, 247, 622, 774
MaeI CTAG 2 cut(s) 411, 974
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 7 cut(s) 119, 173, 231, 455, 772, 895, 908
MalI GATC 7 cut(s) 17, 291, 325, 374, 576, 985, 1135
MboI GATC 7 cut(s) 15, 289, 323, 372, 574, 983, 1133
MboII GAAGA 6 cut(s) 307, 324, 406, 482, 561, 721
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 1057
MluCI AATT 5 cut(s) 127, 505, 874, 1183, 1269
MlyI GAGTC 3 cut(s) 127, 292, 1169
Mph1103I ATGCAT 1 cut(s) 204
MroI TCCGGA 1 cut(s) 1066
MseI TTAA 5 cut(s) 113, 167, 390, 684, 825
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 5 cut(s) 552, 615, 943, 1067, 1121
MspR9I CCNGG 5 cut(s) 105, 609, 995, 1122, 1302
Mva1269I GAATGC 1 cut(s) 975
MvaI CCWGG 4 cut(s) 105, 609, 995, 1302
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 5 cut(s) 61, 70, 158, 767, 1052
NciI CCSGG 1 cut(s) 1122
NdeII GATC 7 cut(s) 15, 289, 323, 372, 574, 983, 1133
NlaIII CATG 2 cut(s) 674, 1232
NlaIV GGNNCC 3 cut(s) 477, 613, 1071
NmuCI GTSAC 4 cut(s) 119, 173, 231, 895
NsiI ATGCAT 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 1153
PaqCI CACCTGC 1 cut(s) 589
PctI GAATGC 1 cut(s) 975
PfeI GAWTC 3 cut(s) 5, 305, 1291
PkrI GCNGC 9 cut(s) 57, 60, 63, 154, 157, 160, 343, 424, 627
PleI GAGTC 3 cut(s) 126, 292, 1168
PpsI GAGTC 3 cut(s) 126, 292, 1168
Psp6I CCWGG 4 cut(s) 103, 607, 993, 1300
PspGI CCWGG 4 cut(s) 103, 607, 993, 1300
PspN4I GGNNCC 3 cut(s) 477, 613, 1071
PspPI GGNCC 3 cut(s) 734, 835, 1118
PspXI VCTCGAGB 1 cut(s) 1153
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 1 cut(s) 15
RsaI GTAC 3 cut(s) 892, 1017, 1286
RsaNI GTAC 3 cut(s) 891, 1016, 1285
SaqAI TTAA 5 cut(s) 113, 167, 390, 684, 825
SatI GCNGC 9 cut(s) 56, 59, 62, 153, 156, 159, 342, 423, 626
Sau3AI GATC 7 cut(s) 15, 289, 323, 372, 574, 983, 1133
Sau96I GGNCC 3 cut(s) 734, 835, 1118
SchI GAGTC 3 cut(s) 127, 292, 1169
ScrFI CCNGG 5 cut(s) 105, 609, 995, 1122, 1302
SduI GDGCHC 1 cut(s) 1057
SfaNI GCATC 4 cut(s) 211, 247, 622, 774
SfcI CTRYAG 1 cut(s) 762
Sfr274I CTCGAG 1 cut(s) 1153
SinI GGWCC 1 cut(s) 1118
SlaI CTCGAG 1 cut(s) 1153
SmlI CTYRAG 4 cut(s) 192, 913, 1137, 1153
SmoI CTYRAG 4 cut(s) 192, 913, 1137, 1153
Sse9I AATT 5 cut(s) 127, 505, 874, 1183, 1269
SsiI CCGC 8 cut(s) 101, 153, 156, 159, 236, 342, 1046, 1259
SspMI CTAG 2 cut(s) 411, 974
StyD4I CCNGG 5 cut(s) 103, 607, 993, 1120, 1300
StyI CCWWGG 2 cut(s) 410, 730
TaaI ACNGT 5 cut(s) 515, 823, 895, 1199, 1310
TaiI ACGT 1 cut(s) 604
TaqI TCGA 6 cut(s) 139, 359, 375, 630, 1132, 1154
TasI AATT 5 cut(s) 127, 505, 874, 1183, 1269
TauI GCSGC 4 cut(s) 155, 158, 161, 344
TfiI GAWTC 3 cut(s) 5, 305, 1291
Tru1I TTAA 5 cut(s) 113, 167, 390, 684, 825
Tru9I TTAA 5 cut(s) 113, 167, 390, 684, 825
TseFI GTSAC 4 cut(s) 119, 173, 231, 895
TseI GCWGC 5 cut(s) 55, 58, 61, 422, 625
Tsp45I GTSAC 4 cut(s) 119, 173, 231, 895
TspDTI ATGAA 1 cut(s) 540
TspGWI ACGGA 2 cut(s) 604, 1179
VpaK11BI GGWCC 1 cut(s) 1118
XapI RAATTY 2 cut(s) 874, 1269
XhoI CTCGAG 1 cut(s) 1153
XmaJI CCTAGG 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 406
XspI CTAG 2 cut(s) 411, 974
ZraI GACGTC 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.