RchiOBHm_Chr7g0209501

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013533
Physical Location & Seq
Reverse (-)
26993126 .. 26997490
4365 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18751

Sequence Viewer

Length: 1179 bp
ATGGATTCCCGGGACGCCCCGCCGCAGCAGCCTCCGCCACAGCAACCCAACATGATGGTGGGCCCCAATTCCTACCCTTCCCCCATGGCCAACCCCAACCCCAACAACACCGCTACCGCCACCGCCAACAGCAACAACAACAACTCCTCGGCCGCGATGTTGGGCGGCGGCGGGCCGAATTCGGGTCGGTTCCAGTTCAACACGGTGGCCCAGCAGCAGCCCGCATCGAAGCCGCAGCCGCTCGATTCCATGAGCCCGAGCCCGTTCGACGGATCGTTGAGGCCGTGCGGCGGCGGCGGCGGCAGCGCAGGGTTTAGCATCGACTCTTCTACGGCCTCGGCGGGGAAGAAGAAGCGAGGGAGGCCCAGAAAGTACTCCCCTGATGGCAACATTGCATTGGGATTGGCGCCAACTCAGATTCCTGCCTCGGCTCCCGTTGCGGCCGCCGCCGGCCCCCACGGAGAATCGAGCGGCACCATGTCGTCGGATCCCCCTGCCAAGAAGAACAGGGGGCGCCCGCCGGGCTCCGGAAAGAAGCAGCTCGACGCTTTGGGAGCTGGTGGAGTTGGGTTCACGCCTCATGTCATTATGGTGCAAGCCGGCGAGGATATAGCATCAAAGGTTATGTCCTTTTCACAGCAAGGACCACGCACAGTTTGTATCCTTTCTGCAAATGGTCCAATCGGCAATGTTACCCTTCGCCAGCCATCAATGTCTGGTGGTACAGTCACATATGAGGGTCGATTTGAGATTATTTCTCTGTCAGGCTCCTACTTGTTCTCTGAAAATAATGGTAACCGCAGCAGAACTGGTGGTTTGAGTGTGTCCCTGGCAGGGTCTGATGGTTCAGTGCTGGGCGGTGGAGTTGCGGGCATGCTATTGGCAGCAGGCCCGGTACAGGTGATTGTGGGTAGCTTTATTGCGGAAGGGAAAAAATCTAGCTCCAATTTGCTAAAATCCGGGCCTTCTTCTCCACCACCATCTCAAATGTTGAACTTTGGTGCACCTATGACAGCAGCTAGCCCTTCCTCTCAAGGAGGAGGCTCAACTGAGTCGTCTGATGAGAATGGTAGTAGCCCTCTTAACAAGGCGCCACCTGTGCTTTACAGTAACCCTAGTCAACCCATGCATAATATCACGATGTACCAACAATTATGGGCTGGGCAAACTCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

392

Amino Acids

39.53

Weight (kDa)

9.57

Isoelectric Point (pI)

62.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 192 - 307 3.4e-24 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17950 AT5G46640
fragaria_vesca FvH4_5g22000
malus_domestica MD06G1033700.v1.1 MD16G1274800.v1.1
prunus_persica Prupe.5G037000_v2.0.a1
pyrus_communis pycom06g02780 pycom16g24490
rosa_chinensis RchiOBHm_Chr7g0209501
rosa_laevigata RLG00000003123
rosa_multiflora Rmu_sc0000243.1_g000005
rosa_roxburghii Rroxscaffold_3G00249310
rosa_rugosa Rorug07G0114000
rosa_samantha Rh7AG248000 Rh7BG242500 Rh7CG263500 Rh7DG254100
rosa_wichuraiana Rw7G020930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 406, 473, 513, 1090
AccBSI CCGCTC 2 cut(s) 241, 471
AccII CGCG 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 527
AclWI GGATC 3 cut(s) 280, 482, 495
AcoI YGGCCR 3 cut(s) 87, 150, 441
AcsI RAATTY 1 cut(s) 178
AcyI GRCGYC 4 cut(s) 15, 407, 514, 1091
AfaI GTAC 4 cut(s) 374, 724, 897, 1145
AfiI CCNNNNNNNGG 7 cut(s) 182, 269, 290, 342, 527, 834, 898
AgsI TTSAA 2 cut(s) 199, 994
AjnI CCWGG 1 cut(s) 828
AluBI AGCT 5 cut(s) 541, 557, 915, 942, 1019
AluI AGCT 5 cut(s) 541, 557, 915, 942, 1019
Alw21I GWGCWC 1 cut(s) 1006
Alw44I GTGCAC 1 cut(s) 1002
AlwI GGATC 3 cut(s) 280, 482, 495
AlwNI CAGNNNCTG 1 cut(s) 839
Ama87I CYCGRG 2 cut(s) 9, 256
Aor13HI TCCGGA 1 cut(s) 527
ApaI GGGCCC 1 cut(s) 65
ApaLI GTGCAC 1 cut(s) 1002
ApoI RAATTY 1 cut(s) 178
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
AspLEI GCGC 4 cut(s) 308, 409, 516, 1093
AsuC2I CCSGG 5 cut(s) 10, 11, 522, 893, 961
AsuHPI GGTGA 1 cut(s) 913
AsuNHI GCTAGC 1 cut(s) 1019
AvaI CYCGRG 2 cut(s) 9, 256
AvaII GGWCC 2 cut(s) 644, 677
BaeGI GKGCMC 2 cut(s) 65, 1006
BalI TGGCCA 1 cut(s) 89
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 4 cut(s) 406, 473, 513, 1090
BanII GRGCYC 4 cut(s) 65, 257, 263, 527
Bbv12I GWGCWC 1 cut(s) 1006
BccI CCATC 5 cut(s) 49, 377, 715, 836, 988
BceAI ACGGC 2 cut(s) 268, 348
BciT130I CCWGG 1 cut(s) 830
BciVI GTATCC 1 cut(s) 671
BcnI CCSGG 5 cut(s) 10, 11, 522, 893, 961
BfaI CTAG 3 cut(s) 939, 1020, 1116
BfoI RGCGCY 3 cut(s) 410, 517, 1094
BfuI GTATCC 1 cut(s) 671
BglI GCCNNNNNGGC 1 cut(s) 522
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 6 cut(s) 10, 11, 522, 830, 893, 961
Bme18I GGWCC 2 cut(s) 644, 677
BmeT110I CYCGRG 2 cut(s) 9, 256
BmrFI CCNGG 6 cut(s) 10, 11, 522, 830, 893, 961
BmsI GCATC 3 cut(s) 233, 327, 623
BmtI GCTAGC 1 cut(s) 1023
BpuEI CTTGAG 1 cut(s) 1017
BpuMI CCSGG 5 cut(s) 10, 11, 522, 893, 961
BsaHI GRCGYC 4 cut(s) 15, 407, 514, 1091
BsaJI CCNNGG 7 cut(s) 9, 84, 147, 336, 426, 457, 828
BsaWI WCCGGW 1 cut(s) 527
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 7 cut(s) 182, 269, 290, 342, 527, 834, 898
Bse118I RCCGGY 2 cut(s) 449, 599
Bse1I ACTGG 2 cut(s) 193, 814
Bse3DI GCAATG 2 cut(s) 390, 694
BseAI TCCGGA 1 cut(s) 527
BseBI CCWGG 1 cut(s) 830
BseDI CCNNGG 7 cut(s) 9, 84, 147, 336, 426, 457, 828
BseLI CCNNNNNNNGG 7 cut(s) 182, 269, 290, 342, 527, 834, 898
BseMI GCAATG 2 cut(s) 390, 694
BseMII CTCAG 2 cut(s) 428, 1041
BseNI ACTGG 2 cut(s) 193, 814
BseRI GAGGAG 2 cut(s) 136, 1053
BseSI GKGCMC 2 cut(s) 65, 1006
BseX3I CGGCCG 2 cut(s) 150, 441
BseYI CCCAGC 3 cut(s) 210, 853, 1160
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 2 cut(s) 153, 444
BshNI GGYRCC 4 cut(s) 406, 473, 513, 1090
BsiEI CGRYCG 2 cut(s) 153, 444
BsiHKAI GWGCWC 1 cut(s) 1006
BsiHKCI CYCGRG 2 cut(s) 9, 256
BsiSI CCGG 7 cut(s) 10, 450, 521, 528, 600, 893, 960
BslFI GGGAC 2 cut(s) 26, 811
BslI CCNNNNNNNGG 7 cut(s) 182, 269, 290, 342, 527, 834, 898
BsmFI GGGAC 2 cut(s) 26, 811
BsoBI CYCGRG 2 cut(s) 9, 256
Bsp120I GGGCCC 1 cut(s) 61
Bsp1286I GDGCHC 5 cut(s) 65, 257, 263, 527, 1006
Bsp13I TCCGGA 1 cut(s) 527
Bsp143I GATC 2 cut(s) 272, 487
Bsp19I CCATGG 1 cut(s) 84
BspCNI CTCAG 2 cut(s) 427, 1042
BspEI TCCGGA 1 cut(s) 527
BspFNI CGCG 1 cut(s) 155
BspOI GCTAGC 1 cut(s) 1023
BspPI GGATC 3 cut(s) 280, 482, 495
BspT107I GGYRCC 4 cut(s) 406, 473, 513, 1090
BsrBI CCGCTC 2 cut(s) 241, 471
BsrDI GCAATG 2 cut(s) 390, 694
BsrFI RCCGGY 2 cut(s) 449, 599
BsrI ACTGG 2 cut(s) 193, 814
BssAI RCCGGY 2 cut(s) 449, 599
BssECI CCNNGG 7 cut(s) 9, 84, 147, 336, 426, 457, 828
BssMI GATC 2 cut(s) 272, 487
BssNI GRCGYC 4 cut(s) 15, 407, 514, 1091
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 830
Bst4CI ACNGT 5 cut(s) 205, 655, 727, 1109, 1176
Bst6I CTCTTC 1 cut(s) 331
BstACI GRCGYC 4 cut(s) 15, 407, 514, 1091
BstDEI CTNAG 2 cut(s) 414, 1050
BstDSI CCRYGG 2 cut(s) 84, 457
BstEII GGTNACC 1 cut(s) 794
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 3 cut(s) 410, 517, 1094
BstHHI GCGC 4 cut(s) 308, 409, 516, 1093
BstKTI GATC 2 cut(s) 275, 490
BstMBI GATC 2 cut(s) 272, 487
BstMCI CGRYCG 2 cut(s) 153, 444
BstNI CCWGG 1 cut(s) 830
BstNSI RCATGY 1 cut(s) 877
BstPI GGTNACC 1 cut(s) 794
BstSCI CCNGG 6 cut(s) 8, 9, 520, 828, 891, 959
BstSLI GKGCMC 2 cut(s) 65, 1006
BstUI CGCG 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 487
BstXI CCANNNNNNTGG 1 cut(s) 55
BstYI RGATCY 1 cut(s) 487
BstZI CGGCCG 2 cut(s) 150, 441
BsuI GTATCC 1 cut(s) 671
BtgI CCRYGG 2 cut(s) 84, 457
BtgZI GCGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 855
CaiI CAGNNNCTG 1 cut(s) 839
CciNI GCGGCCGC 1 cut(s) 441
CfoI GCGC 4 cut(s) 308, 409, 516, 1093
Cfr10I RCCGGY 2 cut(s) 449, 599
Cfr9I CCCGGG 1 cut(s) 9
CseI GACGC 2 cut(s) 23, 554
Csp6I GTAC 4 cut(s) 373, 723, 896, 1144
CviAII CATG 7 cut(s) 52, 85, 250, 478, 581, 874, 1126
CviQI GTAC 4 cut(s) 373, 723, 896, 1144
DdeI CTNAG 2 cut(s) 414, 1050
DinI GGCGCC 3 cut(s) 408, 515, 1092
DpnI GATC 2 cut(s) 274, 489
DpnII GATC 2 cut(s) 272, 487
EaeI YGGCCR 3 cut(s) 87, 150, 441
EagI CGGCCG 2 cut(s) 150, 441
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
EciI GGCGGA 1 cut(s) 24
EclXI CGGCCG 2 cut(s) 150, 441
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 4 cut(s) 65, 257, 263, 527
Eco47I GGWCC 2 cut(s) 644, 677
Eco52I CGGCCG 2 cut(s) 150, 441
Eco88I CYCGRG 2 cut(s) 9, 256
Eco91I GGTNACC 1 cut(s) 794
EcoO109I RGGNCCY 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 794
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 828
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 1131
EcoT38I GRGCYC 4 cut(s) 65, 257, 263, 527
EgeI GGCGCC 3 cut(s) 408, 515, 1092
EheI GGCGCC 3 cut(s) 408, 515, 1092
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 7 cut(s) 55, 88, 253, 481, 584, 877, 1129
FaqI GGGAC 2 cut(s) 26, 811
FatI CATG 7 cut(s) 51, 84, 249, 477, 580, 873, 1125
FauI CCCGC 6 cut(s) 27, 164, 229, 334, 525, 862
FauNDI CATATG 1 cut(s) 733
FriOI GRGCYC 4 cut(s) 65, 257, 263, 527
FspBI CTAG 3 cut(s) 939, 1020, 1116
GlaI GCGC 4 cut(s) 307, 408, 515, 1092
GsaI CCCAGC 3 cut(s) 214, 857, 1164
HaeII RGCGCY 3 cut(s) 410, 517, 1094
HapII CCGG 7 cut(s) 10, 450, 521, 528, 600, 893, 960
HgaI GACGC 2 cut(s) 23, 554
HhaI GCGC 4 cut(s) 308, 409, 516, 1093
Hin1I GRCGYC 4 cut(s) 15, 407, 514, 1091
Hin1II CATG 7 cut(s) 55, 88, 253, 481, 584, 877, 1129
Hin6I GCGC 4 cut(s) 306, 407, 514, 1091
HinP1I GCGC 4 cut(s) 306, 407, 514, 1091
HincII GTYRAC 1 cut(s) 1121
HindII GTYRAC 1 cut(s) 1121
HinfI GANTC 6 cut(s) 5, 245, 323, 418, 464, 1052
HpaII CCGG 7 cut(s) 10, 450, 521, 528, 600, 893, 960
HphI GGTGA 1 cut(s) 913
Hpy166II GTNNAC 3 cut(s) 573, 1004, 1121
Hpy188I TCNGA 5 cut(s) 417, 487, 784, 841, 1060
Hpy188III TCNNGA 2 cut(s) 528, 1138
Hpy8I GTNNAC 3 cut(s) 573, 1004, 1121
Hpy99I CGWCG 3 cut(s) 272, 487, 548
HpyAV CCTTC 5 cut(s) 87, 707, 920, 975, 1035
HpyCH4III ACNGT 5 cut(s) 205, 655, 727, 1109, 1176
HpyCH4V TGCA 5 cut(s) 395, 595, 671, 1004, 1129
HpyF3I CTNAG 2 cut(s) 414, 1050
Hsp92I GRCGYC 4 cut(s) 15, 407, 514, 1091
Hsp92II CATG 7 cut(s) 55, 88, 253, 481, 584, 877, 1129
HspAI GCGC 4 cut(s) 306, 407, 514, 1091
KasI GGCGCC 3 cut(s) 406, 513, 1090
Kpn2I TCCGGA 1 cut(s) 527
KroI GCCGGC 2 cut(s) 449, 599
KroNI GCCGGC 2 cut(s) 451, 601
Kzo9I GATC 2 cut(s) 272, 487
LmnI GCTCC 5 cut(s) 436, 530, 554, 773, 947
LweI GCATC 3 cut(s) 233, 327, 623
MaeI CTAG 3 cut(s) 939, 1020, 1116
MaeIII GTNAC 4 cut(s) 691, 727, 794, 1109
MalI GATC 2 cut(s) 274, 489
MbiI CCGCTC 2 cut(s) 241, 471
MboI GATC 2 cut(s) 272, 487
MboII GAAGA 5 cut(s) 318, 358, 361, 514, 960
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 5 cut(s) 65, 257, 263, 527, 1006
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 4 cut(s) 67, 178, 946, 1151
MluNI TGGCCA 1 cut(s) 89
Mly113I GGCGCC 3 cut(s) 407, 514, 1091
MlyI GAGTC 2 cut(s) 317, 1061
MmeI TCCRAC 1 cut(s) 465
Mox20I TGGCCA 1 cut(s) 89
Mph1103I ATGCAT 1 cut(s) 1131
MroI TCCGGA 1 cut(s) 527
MroNI GCCGGC 2 cut(s) 449, 599
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 1083
MslI CAYNNNNRTG 2 cut(s) 56, 590
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 7 cut(s) 10, 450, 521, 528, 600, 893, 960
MspR9I CCNGG 6 cut(s) 10, 11, 522, 830, 893, 961
MvaI CCWGG 1 cut(s) 830
MvnI CGCG 1 cut(s) 155
NaeI GCCGGC 2 cut(s) 451, 601
NarI GGCGCC 3 cut(s) 407, 514, 1091
NciI CCSGG 5 cut(s) 10, 11, 522, 893, 961
NcoI CCATGG 1 cut(s) 84
NdeI CATATG 1 cut(s) 733
NdeII GATC 2 cut(s) 272, 487
NgoMIV GCCGGC 2 cut(s) 449, 599
NheI GCTAGC 1 cut(s) 1019
NlaIII CATG 7 cut(s) 55, 88, 253, 481, 584, 877, 1129
NmeAIII GCCGAG 3 cut(s) 128, 317, 407
NmuCI GTSAC 1 cut(s) 727
NotI GCGGCCGC 1 cut(s) 441
NsiI ATGCAT 1 cut(s) 1131
NspI RCATGY 1 cut(s) 877
PaeI GCATGC 1 cut(s) 877
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PdiI GCCGGC 2 cut(s) 451, 601
PfeI GAWTC 4 cut(s) 5, 245, 418, 464
PleI GAGTC 2 cut(s) 317, 1060
PluTI GGCGCC 3 cut(s) 410, 517, 1094
PpsI GAGTC 2 cut(s) 317, 1060
Psp6I CCWGG 1 cut(s) 828
PspEI GGTNACC 1 cut(s) 794
PspFI CCCAGC 3 cut(s) 210, 853, 1160
PspGI CCWGG 1 cut(s) 828
PspOMI GGGCCC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 4 cut(s) 374, 724, 897, 1145
RsaNI GTAC 4 cut(s) 373, 723, 896, 1144
RseI CAYNNNNRTG 2 cut(s) 56, 590
SaqAI TTAA 1 cut(s) 1083
Sau3AI GATC 2 cut(s) 272, 487
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 2 cut(s) 317, 1061
ScrFI CCNGG 6 cut(s) 10, 11, 522, 830, 893, 961
SduI GDGCHC 5 cut(s) 65, 257, 263, 527, 1006
SetI ASST 9 cut(s) 543, 559, 624, 903, 917, 944, 1009, 1021, 1099
SfaNI GCATC 3 cut(s) 233, 327, 623
SfoI GGCGCC 3 cut(s) 408, 515, 1092
SinI GGWCC 2 cut(s) 644, 677
SmaI CCCGGG 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 56, 590
SmlI CTYRAG 1 cut(s) 1032
SmoI CTYRAG 1 cut(s) 1032
SphI GCATGC 1 cut(s) 877
Sse9I AATT 4 cut(s) 67, 178, 946, 1151
SspDI GGCGCC 3 cut(s) 406, 513, 1090
SspMI CTAG 3 cut(s) 939, 1020, 1116
StyD4I CCNGG 6 cut(s) 8, 9, 520, 828, 891, 959
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 5 cut(s) 205, 655, 727, 1109, 1176
TaqI TCGA 7 cut(s) 227, 243, 267, 321, 467, 543, 742
TasI AATT 4 cut(s) 67, 178, 946, 1151
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 4 cut(s) 5, 245, 418, 464
Tru1I TTAA 1 cut(s) 1083
Tru9I TTAA 1 cut(s) 1083
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 1 cut(s) 727
Tsp45I GTSAC 1 cut(s) 727
TspGWI ACGGA 2 cut(s) 285, 474
TspMI CCCGGG 1 cut(s) 9
TspRI CASTG 1 cut(s) 855
VneI GTGCAC 1 cut(s) 1002
VpaK11BI GGWCC 2 cut(s) 644, 677
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 877
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmaI CCCGGG 1 cut(s) 9
XspI CTAG 3 cut(s) 939, 1020, 1116
ZrmI AGTACT 1 cut(s) 374
Zsp2I ATGCAT 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.