Rh7CG263500

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013533
Physical Location & Seq
Reverse (-)
25841221 .. 25842153
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG263500.1

Sequence Viewer

Length: 291 bp
ATGGAATTCCAGGTGATTGTGGGTAGCTTTATTGCGGAAGGGAAAAAATCTAGCTCCAATTTGCTAAAATCAGGGCCTTCTTCTCCACCACCATCTCAAATGTTGAACTTTGGTGCACCTATGACAGCAGCTAGCCCTTCCTCTCAAGGAGGAGGCTCAACTGAGTCGTCTGATGAGAATGGTAGTAGCCCTCTTAACAAGGCGCCACCTGTGCTTTACAGTAACCCTAGTCAACCCATGCATAATATCACGATGTACCAACAATTATGGGCTGGGCAAACTCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

96

Amino Acids

10.04

Weight (kDa)

5.57

Isoelectric Point (pI)

81.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17950 AT5G46640
fragaria_vesca FvH4_5g22000
malus_domestica MD06G1033700.v1.1 MD16G1274800.v1.1
prunus_persica Prupe.5G037000_v2.0.a1
pyrus_communis pycom06g02780 pycom16g24490
rosa_chinensis RchiOBHm_Chr7g0209501
rosa_laevigata RLG00000003123
rosa_multiflora Rmu_sc0000243.1_g000005
rosa_roxburghii Rroxscaffold_3G00249310
rosa_rugosa Rorug07G0114000
rosa_samantha Rh7AG248000 Rh7BG242500 Rh7CG263500 Rh7DG254100
rosa_wichuraiana Rw7G020930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AciI CCGC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 3 cut(s) 27, 54, 131
AluI AGCT 3 cut(s) 27, 54, 131
Alw21I GWGCWC 1 cut(s) 118
Alw44I GTGCAC 1 cut(s) 114
AoxI GGCC 1 cut(s) 74
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 25
AsuNHI GCTAGC 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 11
BfaI CTAG 3 cut(s) 51, 132, 228
BfoI RGCGCY 1 cut(s) 206
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 11
BmtI GCTAGC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 203
BseBI CCWGG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 118
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 118
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 204
BspOI GCTAGC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 202
BssNI GRCGYC 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 221, 288
BstACI GRCGYC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 256
CviAII CATG 1 cut(s) 238
CviJI RGCY 8 cut(s) 27, 54, 76, 131, 135, 156, 189, 272
CviKI_1 RGCY 8 cut(s) 27, 54, 76, 131, 135, 156, 189, 272
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 162
DinI GGCGCC 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 243
EgeI GGCGCC 1 cut(s) 204
EheI GGCGCC 1 cut(s) 204
FaeI CATG 1 cut(s) 241
FaiI YATR 4 cut(s) 122, 239, 243, 268
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 3 cut(s) 51, 132, 228
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 1 cut(s) 76
HhaI GCGC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 1 cut(s) 241
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HinfI GANTC 1 cut(s) 164
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 116, 233
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 2 cut(s) 116, 233
HpyAV CCTTC 3 cut(s) 32, 87, 147
HpyCH4III ACNGT 2 cut(s) 221, 288
HpyCH4V TGCA 2 cut(s) 116, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 1 cut(s) 241
HspAI GCGC 1 cut(s) 203
KasI GGCGCC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 4 cut(s) 23, 57, 222, 258
Lsp1109I GCAGC 1 cut(s) 140
MaeI CTAG 3 cut(s) 51, 132, 228
MaeIII GTNAC 1 cut(s) 221
MboII GAAGA 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 3 cut(s) 5, 58, 263
Mly113I GGCGCC 1 cut(s) 203
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 4 cut(s) 143, 146, 151, 201
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 211
NarI GGCGCC 1 cut(s) 203
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 243
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 172
PluTI GGCGCC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 74
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 118
SetI ASST 6 cut(s) 15, 29, 56, 121, 133, 211
SfoI GGCGCC 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 3 cut(s) 5, 58, 263
SsiI CCGC 1 cut(s) 35
SspDI GGCGCC 1 cut(s) 202
SspMI CTAG 3 cut(s) 51, 132, 228
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 221, 288
TasI AATT 3 cut(s) 5, 58, 263
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 1 cut(s) 128
VneI GTGCAC 1 cut(s) 114
XapI RAATTY 1 cut(s) 5
XspI CTAG 3 cut(s) 51, 132, 228
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.