DNA-binding protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17950 AT5G46640 |
| fragaria_vesca | FvH4_5g22000 |
| malus_domestica | MD06G1033700.v1.1 MD16G1274800.v1.1 |
| prunus_persica | Prupe.5G037000_v2.0.a1 |
| pyrus_communis | pycom06g02780 pycom16g24490 |
| rosa_chinensis | RchiOBHm_Chr7g0209501 |
| rosa_laevigata | RLG00000003123 |
| rosa_multiflora | Rmu_sc0000243.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00249310 |
| rosa_rugosa | Rorug07G0114000 |
| rosa_samantha | Rh7AG248000 Rh7BG242500 Rh7CG263500 Rh7DG254100 |
| rosa_wichuraiana | Rw7G020930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 2 cut(s) | 13, 186 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 123 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 244, 276 |
| AluBI | AGCT | 1 cut(s) | 455 |
| AluI | AGCT | 1 cut(s) | 455 |
| Alw21I | GWGCWC | 1 cut(s) | 399 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 128 |
| ApeKI | GCWGC | 3 cut(s) | 90, 173, 305 |
| AspLEI | GCGC | 1 cut(s) | 295 |
| AspS9I | GGNCC | 1 cut(s) | 389 |
| AsuHPI | GGTGA | 2 cut(s) | 171, 202 |
| AvaII | GGWCC | 1 cut(s) | 389 |
| BanII | GRGCYC | 1 cut(s) | 314 |
| Bbv12I | GWGCWC | 1 cut(s) | 399 |
| BbvI | GCAGC | 3 cut(s) | 102, 185, 317 |
| BccI | CCATC | 2 cut(s) | 125, 322 |
| BciVI | GTATCC | 1 cut(s) | 124 |
| BfaI | CTAG | 1 cut(s) | 266 |
| BfmI | CTRYAG | 1 cut(s) | 400 |
| BfuI | GTATCC | 1 cut(s) | 124 |
| BisI | GCNGC | 3 cut(s) | 91, 174, 306 |
| BlsI | GCNGC | 3 cut(s) | 92, 175, 307 |
| Bme18I | GGWCC | 1 cut(s) | 389 |
| BmgT120I | GGNCC | 1 cut(s) | 389 |
| BmiI | GGNNCC | 2 cut(s) | 58, 390 |
| BmsI | GCATC | 1 cut(s) | 278 |
| BsaJI | CCNNGG | 1 cut(s) | 117 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 138, 168, 244, 274 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 123 |
| Bse1I | ACTGG | 1 cut(s) | 182 |
| Bse3DI | GCAATG | 1 cut(s) | 207 |
| BseDI | CCNNGG | 1 cut(s) | 117 |
| BseGI | GGATG | 1 cut(s) | 314 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 123 |
| BseMI | GCAATG | 1 cut(s) | 207 |
| BseNI | ACTGG | 1 cut(s) | 182 |
| BseRI | GAGGAG | 1 cut(s) | 342 |
| BseXI | GCAGC | 3 cut(s) | 102, 185, 317 |
| BsiHKAI | GWGCWC | 1 cut(s) | 399 |
| BslFI | GGGAC | 1 cut(s) | 402 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 123 |
| BsmFI | GGGAC | 1 cut(s) | 402 |
| Bsp1286I | GDGCHC | 2 cut(s) | 314, 399 |
| BspLI | GGNNCC | 2 cut(s) | 58, 390 |
| BsrDI | GCAATG | 1 cut(s) | 207 |
| BsrI | ACTGG | 1 cut(s) | 182 |
| BssECI | CCNNGG | 1 cut(s) | 117 |
| BssT1I | CCWWGG | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 3 cut(s) | 16, 404, 462 |
| BstC8I | GCNNGC | 3 cut(s) | 160, 164, 310 |
| BstF5I | GGATG | 1 cut(s) | 314 |
| BstHHI | GCGC | 1 cut(s) | 295 |
| BstNSI | RCATGY | 1 cut(s) | 166 |
| BstSFI | CTRYAG | 1 cut(s) | 400 |
| BstV1I | GCAGC | 3 cut(s) | 102, 185, 317 |
| BsuI | GTATCC | 1 cut(s) | 124 |
| BtsCI | GGATG | 1 cut(s) | 314 |
| Cac8I | GCNNGC | 3 cut(s) | 160, 164, 310 |
| CaiI | CAGNNNCTG | 1 cut(s) | 128 |
| CfoI | GCGC | 1 cut(s) | 295 |
| Cfr13I | GGNCC | 1 cut(s) | 389 |
| CseI | GACGC | 1 cut(s) | 165 |
| Csp6I | GTAC | 2 cut(s) | 12, 185 |
| CviAII | CATG | 1 cut(s) | 163 |
| CviJI | RGCY | 2 cut(s) | 312, 455 |
| CviKI_1 | RGCY | 2 cut(s) | 312, 455 |
| CviQI | GTAC | 2 cut(s) | 12, 185 |
| Eco130I | CCWWGG | 1 cut(s) | 117 |
| Eco24I | GRGCYC | 1 cut(s) | 314 |
| Eco47I | GGWCC | 1 cut(s) | 389 |
| EcoO109I | RGGNCCY | 1 cut(s) | 389 |
| EcoT14I | CCWWGG | 1 cut(s) | 117 |
| EcoT38I | GRGCYC | 1 cut(s) | 314 |
| ErhI | CCWWGG | 1 cut(s) | 117 |
| FaeI | CATG | 1 cut(s) | 166 |
| FaiI | YATR | 7 cut(s) | 22, 24, 164, 170, 423, 428, 445 |
| FaqI | GGGAC | 1 cut(s) | 402 |
| FatI | CATG | 1 cut(s) | 162 |
| FauNDI | CATATG | 1 cut(s) | 22 |
| Fnu4HI | GCNGC | 3 cut(s) | 91, 174, 306 |
| FokI | GGATG | 1 cut(s) | 301 |
| FriOI | GRGCYC | 1 cut(s) | 314 |
| Fsp4HI | GCNGC | 3 cut(s) | 91, 174, 306 |
| FspBI | CTAG | 1 cut(s) | 266 |
| GlaI | GCGC | 1 cut(s) | 294 |
| GluI | GCNGC | 3 cut(s) | 91, 174, 306 |
| HgaI | GACGC | 1 cut(s) | 165 |
| HhaI | GCGC | 1 cut(s) | 295 |
| Hin1II | CATG | 1 cut(s) | 166 |
| Hin6I | GCGC | 1 cut(s) | 293 |
| HinP1I | GCGC | 1 cut(s) | 293 |
| HinfI | GANTC | 2 cut(s) | 85, 341 |
| HphI | GGTGA | 2 cut(s) | 171, 202 |
| Hpy188I | TCNGA | 3 cut(s) | 73, 130, 349 |
| Hpy188III | TCNNGA | 1 cut(s) | 249 |
| HpyCH4III | ACNGT | 3 cut(s) | 16, 404, 462 |
| HpyCH4V | TGCA | 1 cut(s) | 430 |
| Hsp92II | CATG | 1 cut(s) | 166 |
| HspAI | GCGC | 1 cut(s) | 293 |
| LpnPI | CCDG | 7 cut(s) | 39, 108, 144, 173, 195, 370, 405 |
| Lsp1109I | GCAGC | 3 cut(s) | 102, 185, 317 |
| LweI | GCATC | 1 cut(s) | 278 |
| MaeI | CTAG | 1 cut(s) | 266 |
| MaeIII | GTNAC | 2 cut(s) | 16, 177 |
| MhlI | GDGCHC | 2 cut(s) | 314, 399 |
| MlyI | GAGTC | 1 cut(s) | 350 |
| MmeI | TCCRAC | 2 cut(s) | 252, 258 |
| MnlI | CCTC | 7 cut(s) | 19, 140, 268, 320, 323, 328, 378 |
| MslI | CAYNNNNRTG | 1 cut(s) | 167 |
| NdeI | CATATG | 1 cut(s) | 22 |
| NlaIII | CATG | 1 cut(s) | 166 |
| NlaIV | GGNNCC | 2 cut(s) | 58, 390 |
| NmuCI | GTSAC | 2 cut(s) | 16, 177 |
| NspI | RCATGY | 1 cut(s) | 166 |
| PaeI | GCATGC | 1 cut(s) | 166 |
| PfeI | GAWTC | 1 cut(s) | 85 |
| PkrI | GCNGC | 3 cut(s) | 92, 175, 307 |
| PleI | GAGTC | 1 cut(s) | 349 |
| PpsI | GAGTC | 1 cut(s) | 349 |
| PpuMI | RGGWCCY | 1 cut(s) | 389 |
| Psp5II | RGGWCCY | 1 cut(s) | 389 |
| PspN4I | GGNNCC | 2 cut(s) | 58, 390 |
| PspPI | GGNCC | 1 cut(s) | 389 |
| PspPPI | RGGWCCY | 1 cut(s) | 389 |
| PstNI | CAGNNNCTG | 1 cut(s) | 128 |
| RsaI | GTAC | 2 cut(s) | 13, 186 |
| RsaNI | GTAC | 2 cut(s) | 12, 185 |
| RseI | CAYNNNNRTG | 1 cut(s) | 167 |
| SatI | GCNGC | 3 cut(s) | 91, 174, 306 |
| Sau96I | GGNCC | 1 cut(s) | 389 |
| SchI | GAGTC | 1 cut(s) | 350 |
| SduI | GDGCHC | 2 cut(s) | 314, 399 |
| SetI | ASST | 5 cut(s) | 58, 151, 192, 394, 457 |
| SfaNI | GCATC | 1 cut(s) | 278 |
| SfcI | CTRYAG | 1 cut(s) | 400 |
| SinI | GGWCC | 1 cut(s) | 389 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 167 |
| SphI | GCATGC | 1 cut(s) | 166 |
| SspMI | CTAG | 1 cut(s) | 266 |
| StyI | CCWWGG | 1 cut(s) | 117 |
| TaaI | ACNGT | 3 cut(s) | 16, 404, 462 |
| TaqI | TCGA | 1 cut(s) | 31 |
| TatI | WGTACW | 1 cut(s) | 184 |
| TfiI | GAWTC | 1 cut(s) | 85 |
| TseFI | GTSAC | 2 cut(s) | 16, 177 |
| TseI | GCWGC | 3 cut(s) | 90, 173, 305 |
| Tsp45I | GTSAC | 2 cut(s) | 16, 177 |
| TspDTI | ATGAA | 1 cut(s) | 196 |
| VpaK11BI | GGWCC | 1 cut(s) | 389 |
| XceI | RCATGY | 1 cut(s) | 166 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 235 |
| XspI | CTAG | 1 cut(s) | 266 |