Rh7BG242500

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013533
Physical Location & Seq
Reverse (-)
21499654 .. 21504075
4422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG242500.1

Sequence Viewer

Length: 1158 bp
ATGGATTCCCGGGACGCCCCGCCGCAGCAGCAGCAGCCTCCGCCTCAGCAACCCAACATGATGGTGGGCCCCAATTCCTACCCTTCCCCCATGGCCAACCCCAACAACAACGCCACCGCCACCGCCAACAGCAACAACAACTCCTCGGCCGCGATGTTGAGCGGCGGCGGGCCGAATTCGGGTCGGTTCCAGTTCAACACGGTGGCCCAGCAGCCCGCATCGAAGCCGCAGCCGCTCGATTCCATGAGCCCGAGCCCGTTCGACGGATCGTTGAGGCCGTGCGGCGGCGGGTTTAGCATCGACTCTTCTACGGCCTCGGCGGGGAAGAAGAAGCGGGGCAGGCCCAGAAAGTACTCCCCTGATGGCAACATTGCATTGGGATTGGCGCCAACTCAGATTCCTGCCTCGGCTCCCGTTGCGGCCGCCGCCGGCCCCCACGGAGAATCGAGCGGCACCATGTCGTCGGATCCCCCTGCCAAGAAGAACAGGGGTCGCCCGCCGGGCTCTGGAAAGAAGCAGCTCGACGCTTTGGGAGCTGGTGGAGTTGGGTTCACGCCTCATGTCATTATGGTGCAAGCCGGCGAGGATATAGCATCAAAGGTTATGTCCTTTTCACAGCAAGGACCACGCACAGTTTGTATCCTTTCTGCAAATGGTCCAATTGGCAATGTTACCCTTCGCCAGCCATCAATGTCTGGTGGTACAGTCACATATGAGGGTCGATTTGAGATTATTTCTCTGTCAGGCTCCTACTTGTTCTCTGAAAATAATGGTAACCGCAGCAGAACTGGTGGTTTGAGTGTGTCCCTGGCAGGGTCTGATGGTTCAGTGCTGGGTGGTGGAGTTGCGGGCATGCTATTGGCAGCAGGCCCCGTACAGGTGATTGTGGGTAGTTTTATTGCGGAAGGGAAAAAATCTAGCTCCAATTTGCTAAAATCTGGGCCTTCTTCTCCACCACCATCTCAAATGTTGAACTTTGGTGCACCTATGACAGCAGCTAGCCCTTCCTCTCAAGGAGGAGGCTCAACTGAGTCGTCTGATGAGAATGGTAGTAGCCCTCTTAACAAGGCGCCACCTGTGCTTTACAGTAACCCTAGTCAACCCATGCATAATATCACGATGTACCAACAATTATGGGCCGGGCAAACTCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

385

Amino Acids

39.05

Weight (kDa)

9.57

Isoelectric Point (pI)

63.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 185 - 300 3.3e-24 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17950 AT5G46640
fragaria_vesca FvH4_5g22000
malus_domestica MD06G1033700.v1.1 MD16G1274800.v1.1
prunus_persica Prupe.5G037000_v2.0.a1
pyrus_communis pycom06g02780 pycom16g24490
rosa_chinensis RchiOBHm_Chr7g0209501
rosa_laevigata RLG00000003123
rosa_multiflora Rmu_sc0000243.1_g000005
rosa_roxburghii Rroxscaffold_3G00249310
rosa_rugosa Rorug07G0114000
rosa_samantha Rh7AG248000 Rh7BG242500 Rh7CG263500 Rh7DG254100
rosa_wichuraiana Rw7G020930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 385, 452, 1069
AccBSI CCGCTC 3 cut(s) 162, 235, 450
AccII CGCG 1 cut(s) 152
AclWI GGATC 3 cut(s) 274, 461, 474
AcoI YGGCCR 3 cut(s) 93, 147, 420
AcsI RAATTY 1 cut(s) 175
AcyI GRCGYC 3 cut(s) 15, 386, 1070
AfaI GTAC 4 cut(s) 353, 703, 876, 1124
AfiI CCNNNNNNNGG 7 cut(s) 179, 263, 284, 321, 506, 813, 877
AgsI TTSAA 2 cut(s) 196, 973
AjnI CCWGG 1 cut(s) 807
AluBI AGCT 4 cut(s) 520, 536, 921, 998
AluI AGCT 4 cut(s) 520, 536, 921, 998
Alw21I GWGCWC 1 cut(s) 985
Alw44I GTGCAC 1 cut(s) 981
AlwI GGATC 3 cut(s) 274, 461, 474
AlwNI CAGNNNCTG 1 cut(s) 818
Ama87I CYCGRG 2 cut(s) 9, 250
ApaI GGGCCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 981
ApoI RAATTY 1 cut(s) 175
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AspLEI GCGC 2 cut(s) 388, 1072
AsuC2I CCSGG 4 cut(s) 10, 11, 501, 1141
AsuHPI GGTGA 1 cut(s) 892
AsuNHI GCTAGC 1 cut(s) 998
AvaI CYCGRG 2 cut(s) 9, 250
AvaII GGWCC 2 cut(s) 623, 656
BaeGI GKGCMC 2 cut(s) 71, 985
BalI TGGCCA 1 cut(s) 95
BamHI GGATCC 1 cut(s) 466
BanI GGYRCC 3 cut(s) 385, 452, 1069
BanII GRGCYC 4 cut(s) 71, 251, 257, 506
Bbv12I GWGCWC 1 cut(s) 985
BbvCI CCTCAGC 1 cut(s) 45
BccI CCATC 5 cut(s) 55, 356, 694, 815, 967
BceAI ACGGC 2 cut(s) 262, 327
BciT130I CCWGG 1 cut(s) 809
BciVI GTATCC 1 cut(s) 650
BcnI CCSGG 4 cut(s) 10, 11, 501, 1141
BfaI CTAG 3 cut(s) 918, 999, 1095
BfoI RGCGCY 2 cut(s) 389, 1073
BfuI GTATCC 1 cut(s) 650
BglI GCCNNNNNGGC 1 cut(s) 501
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 5 cut(s) 10, 11, 501, 809, 1141
Bme18I GGWCC 2 cut(s) 623, 656
BmeT110I CYCGRG 2 cut(s) 9, 250
BmrFI CCNGG 5 cut(s) 10, 11, 501, 809, 1141
BmsI GCATC 3 cut(s) 227, 306, 602
BmtI GCTAGC 1 cut(s) 1002
Bpu10I CCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 996
BpuMI CCSGG 4 cut(s) 10, 11, 501, 1141
BsaHI GRCGYC 3 cut(s) 15, 386, 1070
BsaJI CCNNGG 7 cut(s) 9, 90, 144, 315, 405, 436, 807
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 7 cut(s) 179, 263, 284, 321, 506, 813, 877
Bse118I RCCGGY 2 cut(s) 428, 578
Bse1I ACTGG 2 cut(s) 190, 793
Bse3DI GCAATG 2 cut(s) 369, 673
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 7 cut(s) 9, 90, 144, 315, 405, 436, 807
BseLI CCNNNNNNNGG 7 cut(s) 179, 263, 284, 321, 506, 813, 877
BseMI GCAATG 2 cut(s) 369, 673
BseMII CTCAG 3 cut(s) 59, 407, 1020
BseNI ACTGG 2 cut(s) 190, 793
BseRI GAGGAG 2 cut(s) 133, 1032
BseSI GKGCMC 2 cut(s) 71, 985
BseX3I CGGCCG 2 cut(s) 147, 420
BseYI CCCAGC 2 cut(s) 207, 832
Bsh1236I CGCG 1 cut(s) 152
Bsh1285I CGRYCG 2 cut(s) 150, 423
BshNI GGYRCC 3 cut(s) 385, 452, 1069
BsiEI CGRYCG 2 cut(s) 150, 423
BsiHKAI GWGCWC 1 cut(s) 985
BsiHKCI CYCGRG 2 cut(s) 9, 250
BsiSI CCGG 5 cut(s) 10, 429, 500, 579, 1140
BslFI GGGAC 2 cut(s) 26, 790
BslI CCNNNNNNNGG 7 cut(s) 179, 263, 284, 321, 506, 813, 877
BsmFI GGGAC 2 cut(s) 26, 790
BsoBI CYCGRG 2 cut(s) 9, 250
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 5 cut(s) 71, 251, 257, 506, 985
Bsp143I GATC 2 cut(s) 266, 466
Bsp19I CCATGG 1 cut(s) 90
BspCNI CTCAG 3 cut(s) 58, 406, 1021
BspFNI CGCG 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 1002
BspPI GGATC 3 cut(s) 274, 461, 474
BspT107I GGYRCC 3 cut(s) 385, 452, 1069
BsrBI CCGCTC 3 cut(s) 162, 235, 450
BsrDI GCAATG 2 cut(s) 369, 673
BsrFI RCCGGY 2 cut(s) 428, 578
BsrI ACTGG 2 cut(s) 190, 793
BssAI RCCGGY 2 cut(s) 428, 578
BssECI CCNNGG 7 cut(s) 9, 90, 144, 315, 405, 436, 807
BssMI GATC 2 cut(s) 266, 466
BssNI GRCGYC 3 cut(s) 15, 386, 1070
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 5 cut(s) 202, 634, 706, 1088, 1155
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 3 cut(s) 15, 386, 1070
BstDEI CTNAG 3 cut(s) 45, 393, 1029
BstDSI CCRYGG 2 cut(s) 90, 436
BstEII GGTNACC 1 cut(s) 773
BstFNI CGCG 1 cut(s) 152
BstH2I RGCGCY 2 cut(s) 389, 1073
BstHHI GCGC 2 cut(s) 388, 1072
BstKTI GATC 2 cut(s) 269, 469
BstMBI GATC 2 cut(s) 266, 466
BstMCI CGRYCG 2 cut(s) 150, 423
BstNI CCWGG 1 cut(s) 809
BstNSI RCATGY 1 cut(s) 856
BstPI GGTNACC 1 cut(s) 773
BstSCI CCNGG 5 cut(s) 8, 9, 499, 807, 1139
BstSLI GKGCMC 2 cut(s) 71, 985
BstUI CGCG 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 466
BstZI CGGCCG 2 cut(s) 147, 420
BsuI GTATCC 1 cut(s) 650
BtgI CCRYGG 2 cut(s) 90, 436
BtgZI GCGATG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 834
CaiI CAGNNNCTG 1 cut(s) 818
CciNI GCGGCCGC 1 cut(s) 420
CfoI GCGC 2 cut(s) 388, 1072
Cfr10I RCCGGY 2 cut(s) 428, 578
Cfr9I CCCGGG 1 cut(s) 9
CseI GACGC 2 cut(s) 23, 533
Csp6I GTAC 4 cut(s) 352, 702, 875, 1123
CviAII CATG 7 cut(s) 58, 91, 244, 457, 560, 853, 1105
CviQI GTAC 4 cut(s) 352, 702, 875, 1123
DdeI CTNAG 3 cut(s) 45, 393, 1029
DinI GGCGCC 2 cut(s) 387, 1071
DpnI GATC 2 cut(s) 268, 468
DpnII GATC 2 cut(s) 266, 466
EaeI YGGCCR 3 cut(s) 93, 147, 420
EagI CGGCCG 2 cut(s) 147, 420
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 1 cut(s) 30
EclXI CGGCCG 2 cut(s) 147, 420
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 4 cut(s) 71, 251, 257, 506
Eco47I GGWCC 2 cut(s) 623, 656
Eco52I CGGCCG 2 cut(s) 147, 420
Eco88I CYCGRG 2 cut(s) 9, 250
Eco91I GGTNACC 1 cut(s) 773
EcoO109I RGGNCCY 2 cut(s) 68, 869
EcoO65I GGTNACC 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 807
EcoT14I CCWWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 1110
EcoT38I GRGCYC 4 cut(s) 71, 251, 257, 506
EgeI GGCGCC 2 cut(s) 387, 1071
EheI GGCGCC 2 cut(s) 387, 1071
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 7 cut(s) 61, 94, 247, 460, 563, 856, 1108
FaqI GGGAC 2 cut(s) 26, 790
FatI CATG 7 cut(s) 57, 90, 243, 456, 559, 852, 1104
FauI CCCGC 8 cut(s) 27, 161, 223, 281, 313, 327, 504, 841
FauNDI CATATG 1 cut(s) 712
FriOI GRGCYC 4 cut(s) 71, 251, 257, 506
FspBI CTAG 3 cut(s) 918, 999, 1095
GlaI GCGC 2 cut(s) 387, 1071
GsaI CCCAGC 2 cut(s) 211, 836
HaeII RGCGCY 2 cut(s) 389, 1073
HapII CCGG 5 cut(s) 10, 429, 500, 579, 1140
HgaI GACGC 2 cut(s) 23, 533
HhaI GCGC 2 cut(s) 388, 1072
Hin1I GRCGYC 3 cut(s) 15, 386, 1070
Hin1II CATG 7 cut(s) 61, 94, 247, 460, 563, 856, 1108
Hin6I GCGC 2 cut(s) 386, 1070
HinP1I GCGC 2 cut(s) 386, 1070
HincII GTYRAC 1 cut(s) 1100
HindII GTYRAC 1 cut(s) 1100
HinfI GANTC 6 cut(s) 5, 239, 302, 397, 443, 1031
HpaII CCGG 5 cut(s) 10, 429, 500, 579, 1140
HphI GGTGA 1 cut(s) 892
Hpy166II GTNNAC 3 cut(s) 552, 983, 1100
Hpy188I TCNGA 5 cut(s) 396, 466, 763, 820, 1039
Hpy188III TCNNGA 2 cut(s) 507, 1117
Hpy8I GTNNAC 3 cut(s) 552, 983, 1100
Hpy99I CGWCG 3 cut(s) 266, 466, 527
HpyAV CCTTC 5 cut(s) 93, 686, 899, 954, 1014
HpyCH4III ACNGT 5 cut(s) 202, 634, 706, 1088, 1155
HpyCH4V TGCA 5 cut(s) 374, 574, 650, 983, 1108
HpyF3I CTNAG 3 cut(s) 45, 393, 1029
Hsp92I GRCGYC 3 cut(s) 15, 386, 1070
Hsp92II CATG 7 cut(s) 61, 94, 247, 460, 563, 856, 1108
HspAI GCGC 2 cut(s) 386, 1070
KasI GGCGCC 2 cut(s) 385, 1069
KroI GCCGGC 2 cut(s) 428, 578
KroNI GCCGGC 2 cut(s) 430, 580
Kzo9I GATC 2 cut(s) 266, 466
LmnI GCTCC 4 cut(s) 415, 533, 752, 926
LweI GCATC 3 cut(s) 227, 306, 602
MaeI CTAG 3 cut(s) 918, 999, 1095
MaeIII GTNAC 4 cut(s) 670, 706, 773, 1088
MalI GATC 2 cut(s) 268, 468
MbiI CCGCTC 3 cut(s) 162, 235, 450
MboI GATC 2 cut(s) 266, 466
MboII GAAGA 5 cut(s) 297, 337, 340, 493, 939
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 5 cut(s) 71, 251, 257, 506, 985
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 5 cut(s) 73, 175, 660, 925, 1130
MluNI TGGCCA 1 cut(s) 95
Mly113I GGCGCC 2 cut(s) 386, 1070
MlyI GAGTC 2 cut(s) 296, 1040
MmeI TCCRAC 1 cut(s) 444
Mox20I TGGCCA 1 cut(s) 95
Mph1103I ATGCAT 1 cut(s) 1110
MroNI GCCGGC 2 cut(s) 428, 578
MscI TGGCCA 1 cut(s) 95
MseI TTAA 1 cut(s) 1062
MslI CAYNNNNRTG 2 cut(s) 62, 569
Msp20I TGGCCA 1 cut(s) 95
MspI CCGG 5 cut(s) 10, 429, 500, 579, 1140
MspR9I CCNGG 5 cut(s) 10, 11, 501, 809, 1141
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 809
MvnI CGCG 1 cut(s) 152
NaeI GCCGGC 2 cut(s) 430, 580
NarI GGCGCC 2 cut(s) 386, 1070
NciI CCSGG 4 cut(s) 10, 11, 501, 1141
NcoI CCATGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 712
NdeII GATC 2 cut(s) 266, 466
NgoMIV GCCGGC 2 cut(s) 428, 578
NheI GCTAGC 1 cut(s) 998
NlaIII CATG 7 cut(s) 61, 94, 247, 460, 563, 856, 1108
NmeAIII GCCGAG 3 cut(s) 125, 296, 386
NmuCI GTSAC 1 cut(s) 706
NotI GCGGCCGC 1 cut(s) 420
NsiI ATGCAT 1 cut(s) 1110
NspI RCATGY 1 cut(s) 856
PaeI GCATGC 1 cut(s) 856
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PdiI GCCGGC 2 cut(s) 430, 580
PfeI GAWTC 4 cut(s) 5, 239, 397, 443
PleI GAGTC 2 cut(s) 296, 1039
PluTI GGCGCC 2 cut(s) 389, 1073
PpsI GAGTC 2 cut(s) 296, 1039
Psp6I CCWGG 1 cut(s) 807
PspEI GGTNACC 1 cut(s) 773
PspFI CCCAGC 2 cut(s) 207, 832
PspGI CCWGG 1 cut(s) 807
PspOMI GGGCCC 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 4 cut(s) 353, 703, 876, 1124
RsaNI GTAC 4 cut(s) 352, 702, 875, 1123
RseI CAYNNNNRTG 2 cut(s) 62, 569
SaqAI TTAA 1 cut(s) 1062
Sau3AI GATC 2 cut(s) 266, 466
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 2 cut(s) 296, 1040
ScrFI CCNGG 5 cut(s) 10, 11, 501, 809, 1141
SduI GDGCHC 5 cut(s) 71, 251, 257, 506, 985
SetI ASST 8 cut(s) 522, 538, 603, 882, 923, 988, 1000, 1078
SfaNI GCATC 3 cut(s) 227, 306, 602
SfoI GGCGCC 2 cut(s) 387, 1071
SinI GGWCC 2 cut(s) 623, 656
SmaI CCCGGG 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 62, 569
SmlI CTYRAG 1 cut(s) 1011
SmoI CTYRAG 1 cut(s) 1011
SphI GCATGC 1 cut(s) 856
Sse9I AATT 5 cut(s) 73, 175, 660, 925, 1130
SspDI GGCGCC 2 cut(s) 385, 1069
SspMI CTAG 3 cut(s) 918, 999, 1095
StyD4I CCNGG 5 cut(s) 8, 9, 499, 807, 1139
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 5 cut(s) 202, 634, 706, 1088, 1155
TaqI TCGA 7 cut(s) 221, 237, 261, 300, 446, 522, 721
TasI AATT 5 cut(s) 73, 175, 660, 925, 1130
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 4 cut(s) 5, 239, 397, 443
Tru1I TTAA 1 cut(s) 1062
Tru9I TTAA 1 cut(s) 1062
TscAI CASTG 1 cut(s) 834
TseFI GTSAC 1 cut(s) 706
Tsp45I GTSAC 1 cut(s) 706
TspGWI ACGGA 2 cut(s) 279, 453
TspMI CCCGGG 1 cut(s) 9
TspRI CASTG 1 cut(s) 834
VneI GTGCAC 1 cut(s) 981
VpaK11BI GGWCC 2 cut(s) 623, 656
XapI RAATTY 1 cut(s) 175
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmaI CCCGGG 1 cut(s) 9
XspI CTAG 3 cut(s) 918, 999, 1095
ZrmI AGTACT 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.