AT4G19880

Glutathione S-transferase, C-terminal-like (InterPro IPR010987), Glutathione S-transferase chloride channel, C-terminal (InterPro IPR017933), Thioredoxin-like fold (InterPro IPR012336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005011
Physical Location & Seq
Reverse (-)
10784347 .. 10786556
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19880.1

Sequence Viewer

Length: 1071 bp
ATGTCTTATTCCACGATCATTAGCAACACCAGCTTCCTCTCTCTCGCTTCAAAGTTCACTACTCGTGGATCTCGTCTTCAGTGTACAGTATCAATGGCTCGATCTGCGGTTGATGAGACATCAGATTCAGGAGCTTTTCAAAGAACTGCATCGACATTCCGTAACTTCGTTTCAAAAGATTCCAATTCTCAGTTTCCAGCTGAATCTGGTAGATACCATCTTTACATATCGTATGCTTGTCCATGGGCTTCTAGATGCCTTTCATACTTAAAGATCAAAGGACTTGACGATGCAATAAGCTTCTCGTCTGTAAAACCCATTTGGGGAAGAACCAAAGAAACCGATGAACATATGGGATGGGTCTTTCCAGGTTCAGATACCGAAGTTCCAGGAGCTGATCCTGACCATCTTAATGGTGCTAAGAGTGTAAGAGAACTCTATGAGATTGCTAGCCCAAACTACACCGGGAAGTATACTGTTCCTGTTCTGTGGGATAAGAAGCTCAAAACTGTTGTTAACAACGAGAGTGCAGAAATAATCCGGATGTTCAACACTGAGTTCAATCATATTGCGGGAAATCCTGATCTTGATCTTTACCCTTCCCATCTCCAAGCTAAAATCGATGAAACTAATGAATGGATTTACAATGGGATAAATAATGGTGTCTATAGATGCGGGTTTGCAAAGAAACAAGGACCTTATGAGGAGGCAGTGGAGCAAGTGTATGAAGCATTAGATAGATGTGAGGAGATTCTTGGAAAACATCGGTACATCTGTGGTAACACTTTGACTGAAACAGATATCAGATTGTTTGTCACCCTTATAAGATTTGACGAGGTTTATGCAGTCCACTTCAAATGCAACAAGAAACTCATAAGGGAGTATCCGAATTTGTTCAACTACACGAAAGACATTTTCCAGATCCCCGGTATGAGTAGCACGGTTAACATGAATCACATCAAGCAGCATTACTATGGAAGCCACCCGTCGATCAACCCTTTTGGGATCATCCCTCATGGACCAAACATCGATTACACTTCGCCTCATGATCGACACAGATTCTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GST_C_2 GST_N_2

Protein Analysis

356

Amino Acids

40.58

Weight (kDa)

6.89

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N_2 PF13409 79 - 185 3.3e-11 Glutathione S-transferase, N-terminal domain
GST_C PF00043 227 - 309 3.4e-06 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 234 - 302 1.7e-13 Glutathione S-transferase, C-terminal domain
GST_C_3 PF14497 239 - 311 8.7e-06 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 824
AccI GTMKAC 1 cut(s) 473
AccIII TCCGGA 1 cut(s) 540
AciI CCGC 3 cut(s) 107, 572, 675
AclWI GGATC 4 cut(s) 76, 392, 916, 1013
AcsI RAATTY 1 cut(s) 889
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 2 cut(s) 85, 770
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 7 cut(s) 51, 140, 174, 550, 562, 856, 898
AjnI CCWGG 2 cut(s) 367, 388
AluBI AGCT 7 cut(s) 33, 134, 200, 300, 395, 502, 614
AluI AGCT 7 cut(s) 33, 134, 200, 300, 395, 502, 614
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 4 cut(s) 76, 392, 916, 1013
AlwNI CAGNNNCTG 1 cut(s) 395
Aor13HI TCCGGA 1 cut(s) 540
ApeKI GCWGC 1 cut(s) 964
ApoI RAATTY 1 cut(s) 889
Asp700I GAANNNNTTC 1 cut(s) 893
AspS9I GGNCC 2 cut(s) 695, 1019
AsuC2I CCSGG 2 cut(s) 466, 927
AsuHPI GGTGA 1 cut(s) 808
AsuNHI GCTAGC 1 cut(s) 449
AvaII GGWCC 2 cut(s) 695, 1019
BaeI ACNNNNGTAYC 4 cut(s) 369, 402, 760, 793
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 976
BccI CCATC 4 cut(s) 225, 351, 414, 612
BcgI CGANNNNNNTGC 2 cut(s) 824, 858
BciT130I CCWGG 2 cut(s) 369, 390
BciVI GTATCC 1 cut(s) 894
BcnI CCSGG 2 cut(s) 466, 927
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 252, 450
BfmI CTRYAG 1 cut(s) 667
BfuI GTATCC 1 cut(s) 894
BisI GCNGC 1 cut(s) 965
BlsI GCNGC 1 cut(s) 966
Bme1390I CCNGG 4 cut(s) 369, 390, 466, 927
Bme18I GGWCC 2 cut(s) 695, 1019
BmgT120I GGNCC 2 cut(s) 695, 1019
BmrFI CCNGG 4 cut(s) 369, 390, 466, 927
BmsI GCATC 4 cut(s) 158, 245, 280, 662
BmtI GCTAGC 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 68
BpuMI CCSGG 2 cut(s) 466, 927
Bsa29I ATCGAT 2 cut(s) 621, 1029
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 242, 925
BsaWI WCCGGW 1 cut(s) 540
BsaXI ACNNNNNCTCC 3 cut(s) 707, 737, 1046
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 588
BseAI TCCGGA 1 cut(s) 540
BseBI CCWGG 2 cut(s) 369, 390
BseCI ATCGAT 2 cut(s) 621, 1029
BseDI CCNNGG 2 cut(s) 242, 925
BseGI GGATG 3 cut(s) 362, 549, 1008
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 203, 546
BseRI GAGGAG 2 cut(s) 719, 761
BseXI GCAGC 1 cut(s) 976
BsgI GTGCAG 1 cut(s) 549
BshVI ATCGAT 2 cut(s) 621, 1029
BsiSI CCGG 3 cut(s) 465, 541, 927
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 540
Bsp1407I TGTACA 1 cut(s) 83
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 3 cut(s) 107, 572, 675
BspCNI CTCAG 2 cut(s) 202, 547
BspDI ATCGAT 2 cut(s) 621, 1029
BspEI TCCGGA 1 cut(s) 540
BspHI TCATGA 1 cut(s) 1045
BspOI GCTAGC 1 cut(s) 453
BspPI GGATC 4 cut(s) 76, 392, 916, 1013
BsrGI TGTACA 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 242, 925
BssNAI GTATAC 1 cut(s) 474
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 242
Bst1107I GTATAC 1 cut(s) 474
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 369, 390
Bst4CI ACNGT 4 cut(s) 88, 478, 511, 943
BstAUI TGTACA 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 3 cut(s) 189, 420, 555
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 3 cut(s) 362, 549, 1008
BstMAI GTCTC 1 cut(s) 110
BstMWI GCNNNNNNNGC 2 cut(s) 30, 104
BstNI CCWGG 2 cut(s) 369, 390
BstSCI CCNGG 4 cut(s) 367, 388, 464, 925
BstSFI CTRYAG 1 cut(s) 667
BstV1I GCAGC 1 cut(s) 976
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 2 cut(s) 68, 921
BstXI CCANNNNNNTGG 1 cut(s) 413
BstYI RGATCY 2 cut(s) 68, 921
BstZ17I GTATAC 1 cut(s) 474
Bsu15I ATCGAT 2 cut(s) 621, 1029
BsuI GTATCC 1 cut(s) 894
BsuTUI ATCGAT 2 cut(s) 621, 1029
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 3 cut(s) 362, 549, 1008
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 3 cut(s) 86, 552, 717
Cac8I GCNNGC 1 cut(s) 451
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 1 cut(s) 1045
Cfr13I GGNCC 2 cut(s) 695, 1019
ClaI ATCGAT 2 cut(s) 621, 1029
Csp6I GTAC 2 cut(s) 84, 769
CviAII CATG 4 cut(s) 243, 949, 1016, 1046
CviQI GTAC 2 cut(s) 84, 769
DdeI CTNAG 3 cut(s) 189, 420, 555
Eco130I CCWWGG 1 cut(s) 242
Eco32I GATATC 1 cut(s) 802
Eco47I GGWCC 2 cut(s) 695, 1019
Eco57I CTGAAG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 695
EcoRII CCWGG 2 cut(s) 367, 388
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 4 cut(s) 246, 952, 1019, 1049
FatI CATG 4 cut(s) 242, 948, 1015, 1045
FauI CCCGC 2 cut(s) 565, 668
FauNDI CATATG 1 cut(s) 351
FblI GTMKAC 1 cut(s) 473
Fnu4HI GCNGC 1 cut(s) 965
FokI GGATG 3 cut(s) 369, 556, 995
Fsp4HI GCNGC 1 cut(s) 965
FspBI CTAG 2 cut(s) 252, 450
GluI GCNGC 1 cut(s) 965
HapII CCGG 3 cut(s) 465, 541, 927
Hin1II CATG 4 cut(s) 246, 952, 1019, 1049
HincII GTYRAC 2 cut(s) 517, 946
HindII GTYRAC 2 cut(s) 517, 946
HindIII AAGCTT 1 cut(s) 298
HinfI GANTC 6 cut(s) 125, 179, 203, 751, 952, 1059
HpaI GTTAAC 2 cut(s) 517, 946
HpaII CCGG 3 cut(s) 465, 541, 927
HphI GGTGA 1 cut(s) 808
Hpy166II GTNNAC 6 cut(s) 57, 84, 474, 517, 850, 946
Hpy188I TCNGA 4 cut(s) 124, 376, 806, 888
Hpy188III TCNNGA 8 cut(s) 129, 252, 401, 541, 581, 587, 919, 1046
Hpy8I GTNNAC 6 cut(s) 57, 84, 474, 517, 850, 946
Hpy99I CGWCG 1 cut(s) 991
HpyAV CCTTC 1 cut(s) 609
HpyCH4III ACNGT 4 cut(s) 88, 478, 511, 943
HpyCH4V TGCA 6 cut(s) 149, 293, 530, 683, 845, 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 104
HpyF3I CTNAG 3 cut(s) 189, 420, 555
Hsp92II CATG 4 cut(s) 246, 952, 1019, 1049
Kpn2I TCCGGA 1 cut(s) 540
KspAI GTTAAC 2 cut(s) 517, 946
LmnI GCTCC 3 cut(s) 131, 392, 715
Lsp1109I GCAGC 1 cut(s) 976
LweI GCATC 4 cut(s) 158, 245, 280, 662
MaeI CTAG 2 cut(s) 252, 450
MaeIII GTNAC 3 cut(s) 161, 779, 814
MboII GAAGA 2 cut(s) 68, 339
MflI RGATCY 2 cut(s) 68, 921
MluCI AATT 2 cut(s) 184, 889
MnlI CCTC 7 cut(s) 47, 697, 700, 739, 829, 1023, 1053
MroI TCCGGA 1 cut(s) 540
MroXI GAANNNNTTC 1 cut(s) 893
MseI TTAA 4 cut(s) 269, 411, 516, 945
MslI CAYNNNNRTG 2 cut(s) 411, 972
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 3 cut(s) 465, 541, 927
MspR9I CCNGG 4 cut(s) 369, 390, 466, 927
MvaI CCWGG 2 cut(s) 369, 390
MwoI GCNNNNNNNGC 2 cut(s) 30, 104
NciI CCSGG 2 cut(s) 466, 927
NcoI CCATGG 1 cut(s) 242
NdeI CATATG 1 cut(s) 351
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 4 cut(s) 246, 952, 1019, 1049
NmuCI GTSAC 1 cut(s) 814
PagI TCATGA 1 cut(s) 1045
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 6 cut(s) 125, 179, 203, 751, 952, 1059
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 1 cut(s) 966
PpuMI RGGWCCY 1 cut(s) 695
PsiI TTATAA 1 cut(s) 824
Psp5II RGGWCCY 1 cut(s) 695
Psp6I CCWGG 2 cut(s) 367, 388
PspGI CCWGG 2 cut(s) 367, 388
PspPI GGNCC 2 cut(s) 695, 1019
PspPPI RGGWCCY 1 cut(s) 695
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 2 cut(s) 68, 921
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 85, 770
RsaNI GTAC 2 cut(s) 84, 769
RseI CAYNNNNRTG 2 cut(s) 411, 972
SaqAI TTAA 4 cut(s) 269, 411, 516, 945
SatI GCNGC 1 cut(s) 965
Sau96I GGNCC 2 cut(s) 695, 1019
ScrFI CCNGG 4 cut(s) 369, 390, 466, 927
SfaNI GCATC 4 cut(s) 158, 245, 280, 662
SfcI CTRYAG 1 cut(s) 667
SinI GGWCC 2 cut(s) 695, 1019
SmiMI CAYNNNNRTG 2 cut(s) 411, 972
Sse9I AATT 2 cut(s) 184, 889
SsiI CCGC 3 cut(s) 107, 572, 675
SspMI CTAG 2 cut(s) 252, 450
StyD4I CCNGG 4 cut(s) 367, 388, 464, 925
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 4 cut(s) 88, 478, 511, 943
TaqI TCGA 6 cut(s) 100, 152, 621, 989, 1029, 1051
TasI AATT 2 cut(s) 184, 889
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 6 cut(s) 125, 179, 203, 751, 952, 1059
Tru1I TTAA 4 cut(s) 269, 411, 516, 945
Tru9I TTAA 4 cut(s) 269, 411, 516, 945
TscAI CASTG 3 cut(s) 86, 559, 717
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 1 cut(s) 964
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 6 cut(s) 252, 360, 639, 648, 741, 965
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 3 cut(s) 86, 559, 717
VpaK11BI GGWCC 2 cut(s) 695, 1019
XapI RAATTY 1 cut(s) 889
XbaI TCTAGA 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 2 cut(s) 252, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.