Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005011

Physical Location & Seq

Genomic Coordinates Forward (+)

25074385 .. 25076708

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g22990.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTGCGGCAAAAGCCCCACGTGCCATTCACGTGTGACGCAACAGCTTACGACTTCGACCCAACAGCTTACGACTTCAACGCAACAGCTTACGACTTCAATCTTCAAAGCGTTGATTCATGGCAAATTGGCTTATTGGCATGTATATATATATGCACGACGCAGACAAAGAGGAAACAATACACCGAGAAGACTTCCAAAATTTGTATTTATAGCTACCGGGTCTGACCGGAGCTACATCTCCTTCTCCCAGTCTCTCCCGTCAGATCCTGCCCTTGAAGTTGAAGACCGCTATCAGATGGCTCAAACTACGGAGATATCACAATCCGGTGCATTTTTGAGAACTGCTTCTGTATTCCGTAACTTCATTTCACGGGACCCAAATTCGCAGTTTCCGGCAGAACCTGGGAGATATCATCTGTATATCTCATATGGTTGCCCTTGGGCTTCTAGGTGCCTCGCATACTTGAAAATCAAAGGACTTGAGAAAGCCATCGGCTTTACGTCAGTCAGACCAACATGGGGAAGAACAAAAGAAACCGATGAGCATATGGGGTGGGTTTTTCCTGCTTCAGATAACGAGGTAGCTGGAGCTGAACCGGACCCTTTGAATGGAGCAAAAAGTATTAGAGAACTTTACGAACTTGCAAGCACACAGTATACCGGAAAGTACACAGTTCCAGTTCTATGGGATAAAAAACTTAAAACAATTGTCAATAACGAGAGTGCAGAGATTATTCGTATGTTCAATACTGAATTCAATGATATAGCCGAAAACGCATCTTTGGACTTGTATCCTCCTCACTTGCAATCTCAAATTGATCGATCAAATGAATGGATATATGACAAGATAAATAACGGTGTCTATAAATGTGGGTTTGCGAGGAATCAGGAGCCTTATGAAGAGGCTGTGAAAGAATTGTTCGAAGCTTTAGATAAATGCGAGGAGATACTTAGCAAGCAACGATACTTGTGTGGGAACACATTGTCTGAAGCAGATATTCGGTTGTTTGTCACTCTTATAAGATTCGACGAGGCTTACGCAGTCAACTTCAAGTGCAACAAGAAACTGCTACGAGAATACCCAAATTTGTTTAACTACACGAAAGATATCTTCCAAGTTCCTGGAGTGAGCAGCTCTGTCAACATGGATCACATAAAGATAGGTTATTACGGCCTTCTGGCTGTCAATCCATCCGGAATAGTTCCTATCGGCCCAAATATCGACTACTCTTCTCCTCATGACAGAGACAGGTTTTCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_2 GST_N_2

Protein Analysis

422

Amino Acids

48.07

Weight (kDa)

8.27

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19880 AT4G19880 AT4G19880 AT5G44990 AT5G44990 AT5G44990 AT5G44990 AT5G45020 AT5G45020
fragaria_vesca	FvH4_3g12250 FvH4_3g12250
malus_domestica	MD05G1251900.v1.1 MD05G1252100.v1.1 MD05G1252400.v1.1 MD10G1233200.v1.1 MD10G1233400.v1.1
prunus_persica	Prupe.4G111700_v2.0.a1
pyrus_communis	pycom05g22990 pycom05g23000 pycom05g23030 pycom10g19580
rosa_chinensis	RchiOBHm_Chr5g0020071
rosa_laevigata	RLG00000032495
rosa_roxburghii	Rroxscaffold_1G00058130
rosa_rugosa	Rorug03G0085200 Rorug05G0056600
rosa_samantha	Rh5AG146700 Rh5CG157800 Rh5DG145700
rosa_wichuraiana	Rw5G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1022
AccB1I	GGYRCC	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	659
AccIII	TCCGGA	1 cut(s)	1196
AciI	CCGC	2 cut(s)	6, 289
AclWI	GGATC	2 cut(s)	260, 1158
AcsI	RAATTY	4 cut(s)	200, 382, 755, 1087
AcuI	CTGAAG	2 cut(s)	555, 1011
AcvI	CACGTG	2 cut(s)	21, 32
AfaI	GTAC	1 cut(s)	671
AfiI	CCNNNNNNNGG	2 cut(s)	521, 611
AflIII	ACRYGT	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	403, 1123
AluBI	AGCT	9 cut(s)	46, 67, 88, 215, 234, 587, 593, 929, 1137
AluI	AGCT	9 cut(s)	46, 67, 88, 215, 234, 587, 593, 929, 1137
Alw26I	GTCTC	2 cut(s)	258, 1242
AlwI	GGATC	2 cut(s)	260, 1158
AlwNI	CAGNNNCTG	2 cut(s)	269, 404
Aor13HI	TCCGGA	1 cut(s)	1196
AoxI	GGCC	2 cut(s)	1174, 1213
ApeKI	GCWGC	1 cut(s)	1134
ApoI	RAATTY	4 cut(s)	200, 382, 755, 1087
Asp700I	GAANNNNTTC	1 cut(s)	346
AspS9I	GGNCC	3 cut(s)	376, 601, 1214
AsuC2I	CCSGG	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	924
AvaII	GGWCC	2 cut(s)	376, 601
BaeI	ACNNNNGTAYC	2 cut(s)	958, 991
BanI	GGYRCC	1 cut(s)	453
BbrPI	CACGTG	2 cut(s)	21, 32
BbsI	GAAGAC	2 cut(s)	196, 291
BbvI	GCAGC	1 cut(s)	1146
BccI	CCATC	3 cut(s)	292, 500, 1201
BceAI	ACGGC	1 cut(s)	1189
BciT130I	CCWGG	2 cut(s)	405, 1125
BciVI	GTATCC	1 cut(s)	804
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	258, 1242
BfaI	CTAG	1 cut(s)	450
BfuI	GTATCC	1 cut(s)	804
BisI	GCNGC	2 cut(s)	7, 1135
BlsI	GCNGC	2 cut(s)	8, 1136
Bme1390I	CCNGG	3 cut(s)	220, 405, 1125
Bme18I	GGWCC	2 cut(s)	376, 601
BmgT120I	GGNCC	3 cut(s)	376, 601, 1214
BmiI	GGNNCC	5 cut(s)	377, 378, 455, 603, 894
BmrFI	CCNGG	3 cut(s)	220, 405, 1125
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	788
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	2 cut(s)	196, 291
BpmI	CTGGAG	2 cut(s)	609, 1146
Bpu14I	TTCGAA	1 cut(s)	924
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	823
BsaAI	YACGTR	2 cut(s)	21, 32
BsaJI	CCNNGG	2 cut(s)	404, 440
BsaWI	WCCGGW	5 cut(s)	228, 326, 598, 662, 1196
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 611
Bse1I	ACTGG	2 cut(s)	250, 680
BseAI	TCCGGA	1 cut(s)	1196
BseBI	CCWGG	2 cut(s)	405, 1125
BseCI	ATCGAT	1 cut(s)	823
BseDI	CCNNGG	2 cut(s)	404, 440
BseGI	GGATG	1 cut(s)	1193
BseLI	CCNNNNNNNGG	2 cut(s)	521, 611
BseNI	ACTGG	2 cut(s)	250, 680
BseRI	GAGGAG	3 cut(s)	789, 959, 1227
BseXI	GCAGC	1 cut(s)	1146
BsgI	GTGCAG	1 cut(s)	747
BshFI	GGCC	2 cut(s)	1176, 1215
BshNI	GGYRCC	1 cut(s)	453
BshVI	ATCGAT	1 cut(s)	823
BsiSI	CCGG	7 cut(s)	219, 229, 327, 395, 599, 663, 1197
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	521, 611
BsmAI	GTCTC	2 cut(s)	258, 1242
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	1176, 1215
Bsp119I	TTCGAA	1 cut(s)	924
Bsp13I	TCCGGA	1 cut(s)	1196
Bsp143I	GATC	4 cut(s)	265, 820, 824, 1150
BspACI	CCGC	2 cut(s)	6, 289
BspANI	GGCC	2 cut(s)	1176, 1215
BspDI	ATCGAT	1 cut(s)	823
BspEI	TCCGGA	1 cut(s)	1196
BspHI	TCATGA	1 cut(s)	1240
BspLI	GGNNCC	5 cut(s)	377, 378, 455, 603, 894
BspPI	GGATC	2 cut(s)	260, 1158
BspT104I	TTCGAA	1 cut(s)	924
BspT107I	GGYRCC	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	250, 680
BssECI	CCNNGG	2 cut(s)	404, 440
BssMI	GATC	4 cut(s)	265, 820, 824, 1150
BssNAI	GTATAC	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	440
Bst1107I	GTATAC	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	405, 1125
Bst4CI	ACNGT	3 cut(s)	657, 676, 860
Bst6I	CTCTTC	2 cut(s)	897, 1237
BstBAI	YACGTR	2 cut(s)	21, 32
BstBI	TTCGAA	1 cut(s)	924
BstC8I	GCNNGC	2 cut(s)	649, 959
BstDEI	CTNAG	1 cut(s)	953
BstF5I	GGATG	1 cut(s)	1193
BstKTI	GATC	4 cut(s)	268, 823, 827, 1153
BstMAI	GTCTC	2 cut(s)	258, 1242
BstMBI	GATC	4 cut(s)	265, 820, 824, 1150
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 21, 776
BstNI	CCWGG	2 cut(s)	405, 1125
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	218, 403, 1123
BstV1I	GCAGC	1 cut(s)	1146
BstV2I	GAAGAC	2 cut(s)	196, 291
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	2 cut(s)	687, 1124
BstYI	RGATCY	1 cut(s)	265
BstZ17I	GTATAC	1 cut(s)	660
Bsu15I	ATCGAT	1 cut(s)	823
BsuI	GTATCC	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	1176, 1215
BsuTUI	ATCGAT	1 cut(s)	823
BtsCI	GGATG	1 cut(s)	1193
Cac8I	GCNNGC	2 cut(s)	649, 959
CaiI	CAGNNNCTG	2 cut(s)	269, 404
CciI	TCATGA	1 cut(s)	1240
Cfr13I	GGNCC	3 cut(s)	376, 601, 1214
ClaI	ATCGAT	1 cut(s)	823
CseI	GACGC	2 cut(s)	46, 168
Csp6I	GTAC	1 cut(s)	670
CviAII	CATG	5 cut(s)	119, 140, 519, 1147, 1241
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	1 cut(s)	953
DpnI	GATC	4 cut(s)	267, 822, 826, 1152
DpnII	GATC	4 cut(s)	265, 820, 824, 1150
Eam1104I	CTCTTC	2 cut(s)	897, 1237
EarI	CTCTTC	2 cut(s)	897, 1237
Eco130I	CCWWGG	1 cut(s)	440
Eco32I	GATATC	3 cut(s)	318, 413, 1111
Eco47I	GGWCC	2 cut(s)	376, 601
Eco57I	CTGAAG	2 cut(s)	555, 1011
Eco72I	CACGTG	2 cut(s)	21, 32
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	2 cut(s)	403, 1123
EcoRV	GATATC	3 cut(s)	318, 413, 1111
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	5 cut(s)	122, 143, 522, 1150, 1244
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	5 cut(s)	118, 139, 518, 1146, 1240
FauNDI	CATATG	2 cut(s)	430, 549
FblI	GTMKAC	1 cut(s)	659
Fnu4HI	GCNGC	2 cut(s)	7, 1135
FokI	GGATG	1 cut(s)	1180
Fsp4HI	GCNGC	2 cut(s)	7, 1135
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	2 cut(s)	7, 1135
GsuI	CTGGAG	2 cut(s)	609, 1146
HaeIII	GGCC	2 cut(s)	1176, 1215
HapII	CCGG	7 cut(s)	219, 229, 327, 395, 599, 663, 1197
HgaI	GACGC	2 cut(s)	46, 168
Hin1II	CATG	5 cut(s)	122, 143, 522, 1150, 1244
HincII	GTYRAC	2 cut(s)	1048, 1144
HindII	GTYRAC	2 cut(s)	1048, 1144
HindIII	AAGCTT	1 cut(s)	927
HinfI	GANTC	3 cut(s)	115, 886, 1026
HpaII	CCGG	7 cut(s)	219, 229, 327, 395, 599, 663, 1197
Hpy166II	GTNNAC	4 cut(s)	660, 672, 1048, 1144
Hpy188I	TCNGA	6 cut(s)	226, 265, 297, 512, 574, 991
Hpy188III	TCNNGA	3 cut(s)	890, 1197, 1241
Hpy8I	GTNNAC	4 cut(s)	660, 672, 1048, 1144
Hpy99I	CGWCG	2 cut(s)	162, 1034
HpyAV	CCTTC	2 cut(s)	253, 1187
HpyCH4III	ACNGT	3 cut(s)	657, 676, 860
HpyCH4IV	ACGT	3 cut(s)	20, 31, 503
HpyCH4V	TGCA	6 cut(s)	155, 332, 647, 728, 808, 1059
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 21, 776
HpyF3I	CTNAG	1 cut(s)	953
HpySE526I	ACGT	3 cut(s)	20, 31, 503
Hsp92II	CATG	5 cut(s)	122, 143, 522, 1150, 1244
KflI	GGGWCCC	1 cut(s)	376
Kpn2I	TCCGGA	1 cut(s)	1196
Kzo9I	GATC	4 cut(s)	265, 820, 824, 1150
LmnI	GCTCC	4 cut(s)	231, 590, 614, 892
Lsp1109I	GCAGC	1 cut(s)	1146
LweI	GCATC	1 cut(s)	788
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	3 cut(s)	20, 31, 503
MaeIII	GTNAC	3 cut(s)	34, 359, 1012
MalI	GATC	4 cut(s)	267, 822, 826, 1152
MboI	GATC	4 cut(s)	265, 820, 824, 1150
MboII	GAAGA	7 cut(s)	94, 201, 296, 537, 914, 1105, 1224
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	8 cut(s)	125, 200, 382, 708, 755, 816, 917, 1087
MroI	TCCGGA	1 cut(s)	1196
MroXI	GAANNNNTTC	1 cut(s)	346
MseI	TTAA	2 cut(s)	702, 1095
MslI	CAYNNNNRTG	1 cut(s)	30
MspI	CCGG	7 cut(s)	219, 229, 327, 395, 599, 663, 1197
MspR9I	CCNGG	3 cut(s)	220, 405, 1125
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	2 cut(s)	405, 1125
MwoI	GCNNNNNNNGC	3 cut(s)	12, 21, 776
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	2 cut(s)	430, 549
NdeII	GATC	4 cut(s)	265, 820, 824, 1150
NlaIII	CATG	5 cut(s)	122, 143, 522, 1150, 1244
NlaIV	GGNNCC	5 cut(s)	377, 378, 455, 603, 894
NmuCI	GTSAC	2 cut(s)	34, 1012
NspI	RCATGY	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	924
PagI	TCATGA	1 cut(s)	1240
PdmI	GAANNNNTTC	1 cut(s)	346
PfeI	GAWTC	3 cut(s)	115, 886, 1026
PfoI	TCCNGGA	1 cut(s)	1123
PkrI	GCNGC	2 cut(s)	8, 1136
PmaCI	CACGTG	2 cut(s)	21, 32
PmlI	CACGTG	2 cut(s)	21, 32
Ppu21I	YACGTR	2 cut(s)	21, 32
PpuMI	RGGWCCY	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	1022
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	2 cut(s)	403, 1123
PspCI	CACGTG	2 cut(s)	21, 32
PspGI	CCWGG	2 cut(s)	403, 1123
PspN4I	GGNNCC	5 cut(s)	377, 378, 455, 603, 894
PspPI	GGNCC	3 cut(s)	376, 601, 1214
PspPPI	RGGWCCY	1 cut(s)	376
PstNI	CAGNNNCTG	2 cut(s)	269, 404
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	702, 1095
SatI	GCNGC	2 cut(s)	7, 1135
Sau3AI	GATC	4 cut(s)	265, 820, 824, 1150
Sau96I	GGNCC	3 cut(s)	376, 601, 1214
ScrFI	CCNGG	3 cut(s)	220, 405, 1125
SfaNI	GCATC	1 cut(s)	788
SfuI	TTCGAA	1 cut(s)	924
SinI	GGWCC	2 cut(s)	376, 601
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	8 cut(s)	125, 200, 382, 708, 755, 816, 917, 1087
SsiI	CCGC	2 cut(s)	6, 289
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	218, 403, 1123
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	3 cut(s)	657, 676, 860
TaiI	ACGT	3 cut(s)	23, 34, 506
TaqI	TCGA	5 cut(s)	56, 823, 924, 1029, 1224
TasI	AATT	8 cut(s)	125, 200, 382, 708, 755, 816, 917, 1087
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	3 cut(s)	115, 886, 1026
Tru1I	TTAA	2 cut(s)	702, 1095
Tru9I	TTAA	2 cut(s)	702, 1095
TseFI	GTSAC	2 cut(s)	34, 1012
TseI	GCWGC	1 cut(s)	1134
Tsp45I	GTSAC	2 cut(s)	34, 1012
TspDTI	ATGAA	4 cut(s)	107, 355, 846, 915
TspGWI	ACGGA	2 cut(s)	326, 347
VpaK11BI	GGWCC	2 cut(s)	376, 601
XapI	RAATTY	4 cut(s)	200, 382, 755, 1087
XceI	RCATGY	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	659
XmnI	GAANNNNTTC	1 cut(s)	346
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.