Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005011

Physical Location & Seq

Genomic Coordinates Forward (+)

22635105 .. 22637576

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19580.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGATCTTTTCCTCGTTTTCAGACTTTTCTTTTTCTATTTGTTTATTGTTACCATTCAGATCTGGTCGGTCGGACGCAGAGCTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTCTCTCTCTCCGAGTCTCTCCCTCAGATCCCTTTCAAGCCTTCAAGGTATTCATTCTTCAGCACACAATCAAATGGCTCGATCTGCACTAGACGAGACCTCACTATCAGGTGCATTTGTGAGAACTGCTTCTGTATTTCGTAACTTCATTTCGCGGGACCCGAATTCTCAATTTCCGGCAGAAGCTGGAAGATATCATCTGTATGTATCATATGCTTGCCCTTGGGCTTCCAGGTGCCTTGCGTACTTGAACATAAAAGGACTCGATAAAGCCATCAGCTTTACGTCAGTCAAACCGATATGGGAAAGGACAAAAGAAAGTGATGAACATATGGGGTGGGTTTTTCCTGCTTCTGAAACAGAGCTAGCGGGAGCTGAACCTGACCCTTTGAATGGAGCAAAAAGCATTAGAGAACTTTACAAGCTTGCAAGCACACAGTATACTGGAAAGTACACAGTTCCAGTTCTATGGGATAAAAAACTCAAAACAATTGTGAGTAATGAGAGCGGGGAGATTATTCGCATGTTCAATACTGAATTCAACGATATAGCTGAAAATGCGTCTTTGGACTTATATCCTCCTCACTTGCAATCCCAAATTGATCAGACAAATGAGTGGATATATGACAAGATAAACAACGGTGTCTATAAATGCGGGTTTGCGAGGAAGCAAGAGCCTTATGATGAGGCTGTGAAACAATTGTACGAAGCTTTGGATAAATGTGAGGAGATACTTAGCAAGCAACGATACCTGTGCGGGAACACATTGTCTGAAGCAGATATTCGGTTGTTTGTCACTCTTATAAGATTCGACGAGGTTTACGTAGTCCACTTCAAGTGCAACAAGAAAGTACTACGAGAATACCCGAATTTGTTCAACTACACCAAAGACATTTTCCAGGTTCCGGGGATGAGCAGCACAGTCAACATGGATCACATAAAGCGGCACTACTACGGAAGCCATCCGTCTATCAATCCATTCGGAATAATTCCTAGCGGGCCAGATATCGACTACTCTTCGCCTCATGACAGAAACAGGTTTTCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_2 GST_N_2

Protein Analysis

389

Amino Acids

44.02

Weight (kDa)

6.38

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19880 AT4G19880 AT4G19880 AT5G44990 AT5G44990 AT5G44990 AT5G44990 AT5G45020 AT5G45020
fragaria_vesca	FvH4_3g12250 FvH4_3g12250
malus_domestica	MD05G1251900.v1.1 MD05G1252100.v1.1 MD05G1252400.v1.1 MD10G1233200.v1.1 MD10G1233400.v1.1
prunus_persica	Prupe.4G111700_v2.0.a1
pyrus_communis	pycom05g22990 pycom05g23000 pycom05g23030 pycom10g19580
rosa_chinensis	RchiOBHm_Chr5g0020071
rosa_laevigata	RLG00000032495
rosa_roxburghii	Rroxscaffold_1G00058130
rosa_rugosa	Rorug03G0085200 Rorug05G0056600
rosa_samantha	Rh5AG146700 Rh5CG157800 Rh5DG145700
rosa_wichuraiana	Rw5G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	920
AccB1I	GGYRCC	1 cut(s)	351
AccBSI	CCGCTC	1 cut(s)	624
AccI	GTMKAC	1 cut(s)	557
AccII	CGCG	1 cut(s)	271
AciI	CCGC	7 cut(s)	271, 485, 624, 771, 873, 1060, 1113
AclWI	GGATC	2 cut(s)	138, 1056
AcsI	RAATTY	3 cut(s)	280, 653, 985
AcuI	CTGAAG	2 cut(s)	159, 909
AfaI	GTAC	4 cut(s)	362, 569, 821, 969
AfiI	CCNNNNNNNGG	2 cut(s)	509, 1021
AgsI	TTSAA	8 cut(s)	153, 161, 367, 508, 646, 658, 952, 994
AjnI	CCWGG	2 cut(s)	347, 1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	995, 1027
AluBI	AGCT	8 cut(s)	82, 302, 396, 481, 491, 541, 668, 827
AluI	AGCT	8 cut(s)	82, 302, 396, 481, 491, 541, 668, 827
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	137, 206
AlwI	GGATC	2 cut(s)	138, 1056
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	1115
ApeKI	GCWGC	1 cut(s)	1032
ApoI	RAATTY	3 cut(s)	280, 653, 985
Asp700I	GAANNNNTTC	2 cut(s)	244, 989
AspS9I	GGNCC	2 cut(s)	274, 1115
AsuC2I	CCSGG	1 cut(s)	1023
AsuHPI	GGTGA	1 cut(s)	76
AsuNHI	GCTAGC	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	1044
BccI	CCATC	2 cut(s)	398, 1086
BcgI	CGANNNNNNTGC	2 cut(s)	852, 886
BciT130I	CCWGG	2 cut(s)	349, 1016
BclI	TGATCA	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	1023
BcoDI	GTCTC	2 cut(s)	137, 206
BfaI	CTAG	3 cut(s)	206, 482, 1110
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	2 cut(s)	1033, 1061
BlsI	GCNGC	2 cut(s)	1034, 1062
BmcAI	AGTACT	1 cut(s)	969
Bme1390I	CCNGG	3 cut(s)	349, 1016, 1023
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	274, 1115
BmiI	GGNNCC	4 cut(s)	275, 276, 353, 1020
BmrFI	CCNGG	3 cut(s)	349, 1016, 1023
BmtI	GCTAGC	1 cut(s)	485
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpuMI	CCSGG	1 cut(s)	1023
BsaAI	YACGTR	1 cut(s)	940
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	338, 1022
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 1021
Bse1I	ACTGG	2 cut(s)	565, 578
BseBI	CCWGG	2 cut(s)	349, 1016
BseDI	CCNNGG	2 cut(s)	338, 1022
BseGI	GGATG	2 cut(s)	1032, 1078
BseLI	CCNNNNNNNGG	2 cut(s)	509, 1021
BseMII	CTCAG	1 cut(s)	154
BseNI	ACTGG	2 cut(s)	565, 578
BseRI	GAGGAG	2 cut(s)	687, 857
BseXI	GCAGC	1 cut(s)	1044
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	271
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	1117
BshNI	GGYRCC	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	293, 1022
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	509, 1021
BsmAI	GTCTC	2 cut(s)	137, 206
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	1117
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	6 cut(s)	3, 59, 143, 197, 718, 1048
BspACI	CCGC	7 cut(s)	271, 485, 624, 771, 873, 1060, 1113
BspANI	GGCC	1 cut(s)	1117
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	1141
BspLI	GGNNCC	4 cut(s)	275, 276, 353, 1020
BspOI	GCTAGC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	138, 1056
BspT107I	GGYRCC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	624
BsrI	ACTGG	2 cut(s)	565, 578
BssECI	CCNNGG	2 cut(s)	338, 1022
BssMI	GATC	6 cut(s)	3, 59, 143, 197, 718, 1048
BssNAI	GTATAC	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	338
Bst1107I	GTATAC	1 cut(s)	558
Bst2UI	CCWGG	2 cut(s)	349, 1016
Bst4CI	ACNGT	4 cut(s)	555, 574, 758, 1039
Bst6I	CTCTTC	1 cut(s)	1138
BstBAI	YACGTR	1 cut(s)	940
BstC8I	GCNNGC	6 cut(s)	334, 483, 543, 547, 857, 1115
BstDEI	CTNAG	3 cut(s)	140, 851, 1164
BstF5I	GGATG	2 cut(s)	1032, 1078
BstFNI	CGCG	1 cut(s)	271
BstKTI	GATC	6 cut(s)	6, 62, 146, 200, 721, 1051
BstMAI	GTCTC	2 cut(s)	137, 206
BstMBI	GATC	6 cut(s)	3, 59, 143, 197, 718, 1048
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 674
BstNI	CCWGG	2 cut(s)	349, 1016
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	3 cut(s)	347, 1014, 1021
BstSNI	TACGTA	1 cut(s)	940
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	1044
BstX2I	RGATCY	2 cut(s)	59, 143
BstXI	CCANNNNNNTGG	1 cut(s)	585
BstYI	RGATCY	2 cut(s)	59, 143
BstZ17I	GTATAC	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	1117
BtsCI	GGATG	2 cut(s)	1032, 1078
Cac8I	GCNNGC	6 cut(s)	334, 483, 543, 547, 857, 1115
CaiI	CAGNNNCTG	1 cut(s)	302
CciI	TCATGA	1 cut(s)	1141
Cfr13I	GGNCC	2 cut(s)	274, 1115
CseI	GACGC	2 cut(s)	83, 666
Csp6I	GTAC	4 cut(s)	361, 568, 820, 968
CviAII	CATG	3 cut(s)	640, 1045, 1142
CviQI	GTAC	4 cut(s)	361, 568, 820, 968
DdeI	CTNAG	3 cut(s)	140, 851, 1164
DpnI	GATC	6 cut(s)	5, 61, 145, 199, 720, 1050
DpnII	GATC	6 cut(s)	3, 59, 143, 197, 718, 1048
Eam1104I	CTCTTC	1 cut(s)	1138
EarI	CTCTTC	1 cut(s)	1138
Ecl136II	GAGCTC	1 cut(s)	82
Eco105I	TACGTA	1 cut(s)	940
Eco130I	CCWWGG	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	2 cut(s)	311, 1123
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	2 cut(s)	159, 909
EcoICRI	GAGCTC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRI	GAATTC	2 cut(s)	280, 653
EcoRII	CCWGG	2 cut(s)	347, 1014
EcoRV	GATATC	2 cut(s)	311, 1123
EcoT14I	CCWWGG	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	3 cut(s)	643, 1048, 1145
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	3 cut(s)	639, 1044, 1141
FauI	CCCGC	6 cut(s)	264, 478, 617, 764, 866, 1106
FauNDI	CATATG	2 cut(s)	328, 447
FbaI	TGATCA	1 cut(s)	718
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	2 cut(s)	1033, 1061
FokI	GGATG	2 cut(s)	1039, 1065
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	1033, 1061
FspBI	CTAG	3 cut(s)	206, 482, 1110
GluI	GCNGC	2 cut(s)	1033, 1061
HaeIII	GGCC	1 cut(s)	1117
HapII	CCGG	2 cut(s)	293, 1022
HgaI	GACGC	2 cut(s)	83, 666
Hin1II	CATG	3 cut(s)	643, 1048, 1145
HincII	GTYRAC	1 cut(s)	1042
HindII	GTYRAC	1 cut(s)	1042
HindIII	AAGCTT	2 cut(s)	539, 825
HinfI	GANTC	3 cut(s)	130, 378, 924
HpaII	CCGG	2 cut(s)	293, 1022
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	5 cut(s)	558, 570, 937, 946, 1042
Hpy188I	TCNGA	9 cut(s)	22, 59, 73, 129, 143, 472, 723, 889, 1100
Hpy188III	TCNNGA	1 cut(s)	1142
Hpy8I	GTNNAC	5 cut(s)	558, 570, 937, 946, 1042
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	4 cut(s)	555, 574, 758, 1039
HpyCH4IV	ACGT	2 cut(s)	401, 939
HpyCH4V	TGCA	5 cut(s)	203, 230, 545, 706, 957
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 674
HpyF3I	CTNAG	3 cut(s)	140, 851, 1164
HpySE526I	ACGT	2 cut(s)	401, 939
Hsp92II	CATG	3 cut(s)	643, 1048, 1145
KflI	GGGWCCC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	6 cut(s)	3, 59, 143, 197, 718, 1048
LmnI	GCTCC	2 cut(s)	488, 512
Lsp1109I	GCAGC	1 cut(s)	1044
MaeI	CTAG	3 cut(s)	206, 482, 1110
MaeII	ACGT	2 cut(s)	401, 939
MaeIII	GTNAC	3 cut(s)	48, 257, 910
MalI	GATC	6 cut(s)	5, 61, 145, 199, 720, 1050
MbiI	CCGCTC	1 cut(s)	624
MboI	GATC	6 cut(s)	3, 59, 143, 197, 718, 1048
MboII	GAAGA	3 cut(s)	165, 318, 1125
MfeI	CAATTG	2 cut(s)	606, 815
MflI	RGATCY	2 cut(s)	59, 143
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	8 cut(s)	280, 287, 606, 653, 714, 815, 985, 1104
MlyI	GAGTC	2 cut(s)	139, 372
MmeI	TCCRAC	1 cut(s)	51
MroXI	GAANNNNTTC	2 cut(s)	244, 989
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	2 cut(s)	293, 1022
MspR9I	CCNGG	3 cut(s)	349, 1016, 1023
MunI	CAATTG	2 cut(s)	606, 815
MvaI	CCWGG	2 cut(s)	349, 1016
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	200, 674
NciI	CCSGG	1 cut(s)	1023
NdeI	CATATG	2 cut(s)	328, 447
NdeII	GATC	6 cut(s)	3, 59, 143, 197, 718, 1048
NheI	GCTAGC	1 cut(s)	481
NlaIII	CATG	3 cut(s)	643, 1048, 1145
NlaIV	GGNNCC	4 cut(s)	275, 276, 353, 1020
NmuCI	GTSAC	1 cut(s)	910
NspI	RCATGY	1 cut(s)	643
PagI	TCATGA	1 cut(s)	1141
PcsI	WCGNNNNNNNCGW	2 cut(s)	275, 936
PdmI	GAANNNNTTC	2 cut(s)	244, 989
PfeI	GAWTC	1 cut(s)	924
PkrI	GCNGC	2 cut(s)	1034, 1062
PleI	GAGTC	2 cut(s)	138, 372
PpsI	GAGTC	2 cut(s)	138, 372
Ppu21I	YACGTR	1 cut(s)	940
PpuMI	RGGWCCY	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	920
Psp124BI	GAGCTC	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	347, 1014
PspGI	CCWGG	2 cut(s)	347, 1014
PspN4I	GGNNCC	4 cut(s)	275, 276, 353, 1020
PspPI	GGNCC	2 cut(s)	274, 1115
PspPPI	RGGWCCY	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	59, 143
RsaI	GTAC	4 cut(s)	362, 569, 821, 969
RsaNI	GTAC	4 cut(s)	361, 568, 820, 968
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	84
SatI	GCNGC	2 cut(s)	1033, 1061
Sau3AI	GATC	6 cut(s)	3, 59, 143, 197, 718, 1048
Sau96I	GGNCC	2 cut(s)	274, 1115
ScaI	AGTACT	1 cut(s)	969
SchI	GAGTC	2 cut(s)	139, 372
ScrFI	CCNGG	3 cut(s)	349, 1016, 1023
SduI	GDGCHC	1 cut(s)	84
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	318
SnaBI	TACGTA	1 cut(s)	940
Sse9I	AATT	8 cut(s)	280, 287, 606, 653, 714, 815, 985, 1104
SsiI	CCGC	7 cut(s)	271, 485, 624, 771, 873, 1060, 1113
SspMI	CTAG	3 cut(s)	206, 482, 1110
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	3 cut(s)	347, 1014, 1021
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	4 cut(s)	555, 574, 758, 1039
TaiI	ACGT	2 cut(s)	404, 942
TaqI	TCGA	5 cut(s)	196, 381, 927, 1125, 1160
TaqII	GACCGA	1 cut(s)	57
TasI	AATT	8 cut(s)	280, 287, 606, 653, 714, 815, 985, 1104
TatI	WGTACW	2 cut(s)	567, 967
TauI	GCSGC	1 cut(s)	1063
TfiI	GAWTC	1 cut(s)	924
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	1 cut(s)	1032
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	3 cut(s)	158, 253, 456
TspGWI	ACGGA	2 cut(s)	1071, 1086
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	3 cut(s)	280, 653, 985
XceI	RCATGY	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	557
XmnI	GAANNNNTTC	2 cut(s)	244, 989
XspI	CTAG	3 cut(s)	206, 482, 1110
ZrmI	AGTACT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.