AT5G44990

Glutathione S-transferase, C-terminal-like (InterPro IPR010987), Glutathione S-transferase chloride channel, C-terminal (InterPro IPR017933), Thioredoxin-like fold (InterPro IPR012336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005011
Physical Location & Seq
Forward (+)
18163128 .. 18164813
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44990.3

Sequence Viewer

Length: 1053 bp
ATGGCTACACCAATGGAAAACGAAAATCCGAATTTTGCTAGAACCGCAACATCGTTCCGAAACTTTGTTTCAAAAGATCCTGACTCTCAGTTTCCAGCAGAATCAGGAAGATACCATCTTTATATCTCTTATGCTTGTCCATGGGCTTCTAGATGTCTTGCAATCTTGAAACTCAAAGGACTTGACAAAGCTATAAGCTTTTCGTCTGTTCAACCACTTTGGAGAAATACCAAAGAAAACGACGAGCATATGGGATGGGTTTTTCCAGATTCAGATACAGAGGTTCTTGGAGCTGAACGTGATCATATCAATGGTGCGAAAAGCGTAAGAGAACTTTATGATATCGCTAGCTCCAACTACACGGGCAAATATACGGTTCCTGTTCTTTGGGATAAGAAGCTTAAGACTATAGTTAACAATGAGAGCTCTGAGATACTCCGAATGTTCAACACCGAGTTCAATCATGTTGCAGAAAACCCTTCTCTCGATCTTTATCCACCCAACCTCCGAGCCATAATCGATGAGACTAACGAATGGATTCACGATGGGATAAACAACGGTGTTTATAAATGTGGGTTTGCTACAAATCAAGAAACTTATGATGTGGAAGTGAAACGATTGTATGAAGCATTGGACCGATGCGAAGACATACTCAGAAAACAACGGTTTCTTTGTGGAAACACTCTGACTGAATCAGATATCCGATTATTCGTCACTGTCATAAGATTTGACGAGGCTTACGCGGTGATCTTCAAATGCGATAAAAGACTCGTAAGAGAGTATTATCATCTCTTTAACTACACGAAAGATATCTACCAGATCGCGGGAATGAGCAGTACAGTAAAGATGGATCATATCAAGCAAAACTACTATGGAAGCTTTCCTTCTATAAACCCTCTTGAGATCATCGCTCATGGACCAAACATTGATTACTCTTTGCCTCATGATCGACACAGATTCTCTTTAGAAAGTGACTATACCAGACTTGAGTTATTTGAGAGTGCAAGTTTTGTTTGTGAATTGAAATTAATTGAAATTTTTGATTCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GST_C_2 GST_N_2

Protein Analysis

350

Amino Acids

40.61

Weight (kDa)

5.37

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C_2 PF13410 115 - 184 1.3e-10 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 567
AccII CGCG 2 cut(s) 743, 824
AciI CCGC 3 cut(s) 45, 743, 824
AclWI GGATC 2 cut(s) 71, 858
AcsI RAATTY 2 cut(s) 31, 1035
AfaI GTAC 1 cut(s) 838
AfiI CCNNNNNNNGG 1 cut(s) 823
AflII CTTAAG 1 cut(s) 401
AgsI TTSAA 8 cut(s) 72, 169, 212, 448, 460, 754, 1024, 1034
AluBI AGCT 7 cut(s) 191, 198, 293, 351, 400, 426, 879
AluI AGCT 7 cut(s) 191, 198, 293, 351, 400, 426, 879
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 2 cut(s) 71, 858
ApoI RAATTY 2 cut(s) 31, 1035
AseI ATTAAT 1 cut(s) 1028
Asp700I GAANNNNTTC 1 cut(s) 537
AspS9I GGNCC 2 cut(s) 634, 917
AsuHPI GGTGA 1 cut(s) 757
AsuNHI GCTAGC 1 cut(s) 347
AvaII GGWCC 2 cut(s) 634, 917
BaeI ACNNNNGTAYC 2 cut(s) 267, 300
BanII GRGCYC 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 428
BccI CCATC 4 cut(s) 123, 249, 539, 841
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 3 cut(s) 39, 150, 348
BfmI CTRYAG 1 cut(s) 408
BfrI CTTAAG 1 cut(s) 401
Bme18I GGWCC 2 cut(s) 634, 917
BmgT120I GGNCC 2 cut(s) 634, 917
BmiI GGNNCC 1 cut(s) 378
BmsI GCATC 1 cut(s) 629
BmtI GCTAGC 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 651
BpuEI CTTGAG 2 cut(s) 920, 1007
Bsa29I ATCGAT 1 cut(s) 519
BsaBI GATNNNNATC 1 cut(s) 492
BsaJI CCNNGG 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 1 cut(s) 823
Bse8I GATNNNNATC 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 260
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 1 cut(s) 823
BseMII CTCAG 3 cut(s) 101, 420, 667
Bsh1236I CGCG 2 cut(s) 743, 824
BshVI ATCGAT 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 823
BsmAI GTCTC 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 8 cut(s) 76, 301, 487, 747, 819, 850, 903, 946
Bsp19I CCATGG 1 cut(s) 140
BspACI CCGC 3 cut(s) 45, 743, 824
BspCNI CTCAG 3 cut(s) 100, 421, 666
BspDI ATCGAT 1 cut(s) 519
BspFNI CGCG 2 cut(s) 743, 824
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 1 cut(s) 378
BspOI GCTAGC 1 cut(s) 351
BspPI GGATC 2 cut(s) 71, 858
BspTI CTTAAG 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 8 cut(s) 76, 301, 487, 747, 819, 850, 903, 946
BssT1I CCWWGG 1 cut(s) 140
Bst4CI ACNGT 5 cut(s) 376, 560, 666, 718, 841
BstAFI CTTAAG 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 87, 429, 653
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 260
BstFNI CGCG 2 cut(s) 743, 824
BstKTI GATC 8 cut(s) 79, 304, 490, 750, 822, 853, 906, 949
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 8 cut(s) 76, 301, 487, 747, 819, 850, 903, 946
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 2 cut(s) 743, 824
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
Bsu15I ATCGAT 1 cut(s) 519
BsuTUI ATCGAT 1 cut(s) 519
BtgI CCRYGG 1 cut(s) 140
BtgZI GCGATG 1 cut(s) 892
BtsCI GGATG 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 714
Cac8I GCNNGC 1 cut(s) 349
CciI TCATGA 1 cut(s) 943
Cfr13I GGNCC 2 cut(s) 634, 917
ClaI ATCGAT 1 cut(s) 519
Csp6I GTAC 1 cut(s) 837
CviAII CATG 4 cut(s) 141, 464, 914, 944
CviQI GTAC 1 cut(s) 837
DdeI CTNAG 3 cut(s) 87, 429, 653
DpnI GATC 8 cut(s) 78, 303, 489, 749, 821, 852, 905, 948
DpnII GATC 8 cut(s) 76, 301, 487, 747, 819, 850, 903, 946
Ecl136II GAGCTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 428
Eco32I GATATC 3 cut(s) 343, 700, 811
Eco47I GGWCC 2 cut(s) 634, 917
Eco53kI GAGCTC 1 cut(s) 426
EcoICRI GAGCTC 1 cut(s) 426
EcoRV GATATC 3 cut(s) 343, 700, 811
EcoT14I CCWWGG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 4 cut(s) 144, 467, 917, 947
FalI AAGNNNNNCTT 2 cut(s) 868, 900
FatI CATG 4 cut(s) 140, 463, 913, 943
FauI CCCGC 1 cut(s) 817
FauNDI CATATG 1 cut(s) 249
FbaI TGATCA 1 cut(s) 301
FokI GGATG 1 cut(s) 267
FriOI GRGCYC 1 cut(s) 428
FspBI CTAG 3 cut(s) 39, 150, 348
Hin1II CATG 4 cut(s) 144, 467, 917, 947
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 3 cut(s) 196, 398, 877
HinfI GANTC 8 cut(s) 83, 101, 269, 538, 692, 768, 957, 1043
HpaI GTTAAC 1 cut(s) 415
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 1 cut(s) 415
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 489, 894
HpyCH4III ACNGT 5 cut(s) 376, 560, 666, 718, 841
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 161, 470, 1004
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 3 cut(s) 87, 429, 653
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 4 cut(s) 144, 467, 917, 947
Ksp22I TGATCA 1 cut(s) 301
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 8 cut(s) 76, 301, 487, 747, 819, 850, 903, 946
LmnI GCTCC 2 cut(s) 290, 356
LpnPI CCDG 7 cut(s) 90, 93, 108, 279, 393, 830, 994
LweI GCATC 1 cut(s) 629
MaeI CTAG 3 cut(s) 39, 150, 348
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 2 cut(s) 712, 971
MalI GATC 8 cut(s) 78, 303, 489, 749, 821, 852, 905, 948
MboI GATC 8 cut(s) 76, 301, 487, 747, 819, 850, 903, 946
MboII GAAGA 3 cut(s) 120, 656, 742
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 5 cut(s) 31, 1019, 1025, 1029, 1035
MlyI GAGTC 2 cut(s) 77, 762
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 5 cut(s) 274, 515, 727, 906, 951
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 5 cut(s) 402, 414, 795, 1028, 1051
MslI CAYNNNNRTG 1 cut(s) 309
MspCI CTTAAG 1 cut(s) 401
MvnI CGCG 2 cut(s) 743, 824
MwoI GCNNNNNNNGC 1 cut(s) 44
NcoI CCATGG 1 cut(s) 140
NdeI CATATG 1 cut(s) 249
NdeII GATC 8 cut(s) 76, 301, 487, 747, 819, 850, 903, 946
NheI GCTAGC 1 cut(s) 347
NlaIII CATG 4 cut(s) 144, 467, 917, 947
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 2 cut(s) 712, 971
PagI TCATGA 1 cut(s) 943
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 6 cut(s) 101, 269, 538, 692, 957, 1043
PleI GAGTC 2 cut(s) 77, 762
PpsI GAGTC 2 cut(s) 77, 762
PshBI ATTAAT 1 cut(s) 1028
PsiI TTATAA 1 cut(s) 567
Psp124BI GAGCTC 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 634, 917
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 1 cut(s) 838
RsaNI GTAC 1 cut(s) 837
RseI CAYNNNNRTG 1 cut(s) 309
SacI GAGCTC 1 cut(s) 428
SaqAI TTAA 5 cut(s) 402, 414, 795, 1028, 1051
Sau3AI GATC 8 cut(s) 76, 301, 487, 747, 819, 850, 903, 946
Sau96I GGNCC 2 cut(s) 634, 917
SchI GAGTC 2 cut(s) 77, 762
SduI GDGCHC 1 cut(s) 428
SfaNI GCATC 1 cut(s) 629
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 2 cut(s) 634, 917
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 3 cut(s) 401, 899, 986
SmoI CTYRAG 3 cut(s) 401, 899, 986
Sse9I AATT 5 cut(s) 31, 1019, 1025, 1029, 1035
SsiI CCGC 3 cut(s) 45, 743, 824
SspMI CTAG 3 cut(s) 39, 150, 348
SstI GAGCTC 1 cut(s) 428
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 5 cut(s) 376, 560, 666, 718, 841
TaiI ACGT 1 cut(s) 301
TaqI TCGA 3 cut(s) 486, 519, 949
TaqII GACCGA 1 cut(s) 651
TasI AATT 5 cut(s) 31, 1019, 1025, 1029, 1035
TatI WGTACW 1 cut(s) 836
TfiI GAWTC 6 cut(s) 101, 269, 538, 692, 957, 1043
Tru1I TTAA 5 cut(s) 402, 414, 795, 1028, 1051
Tru9I TTAA 5 cut(s) 402, 414, 795, 1028, 1051
TscAI CASTG 1 cut(s) 721
TseFI GTSAC 2 cut(s) 712, 971
Tsp45I GTSAC 2 cut(s) 712, 971
TspDTI ATGAA 1 cut(s) 639
TspRI CASTG 1 cut(s) 721
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 634, 917
VspI ATTAAT 1 cut(s) 1028
XapI RAATTY 2 cut(s) 31, 1035
XbaI TCTAGA 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 3 cut(s) 39, 150, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.