Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Reverse (-)

10982517 .. 10984521

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCTCTAAAGGAACAGCTAGATAAATTCAACAAACAGCAAGTGAAATGCCAATCTACTCTTTCGAGCATTGCTTCTTCCAGAGAAAGAACGAGTTCTTCGAGGCAGAATGTGCCTTTGCCTGCGGCAATCACGCAGAAGAAGCCTGATGCAGCTCCTGTCAAGTTTTCAAGCGATACCGAGCGACTTCAGAACATTAACAACATTAGAAAAGCTCCTGTTGGAGCTCAAATCAAGCGTGTCATTGATCTTCTCTATGAGAGAAGGCTAGCCTTGACGCCAGAGCAAATAAATGAATGGTGTCATGTAGATATGCATGCTAATAAGGCTGTTTTTGATAGTTTAAGGAAGAATCCGAAAGCACATTATGATGGAAGAAGGTTCTCTTATAAGGCTACGCACGATGTTAATGATAAGAACCAGCTTCTTTCATTGGTGAGAAAATACCTTGATGGGATTGCGGTGGTTGATCTCAAAGACGCTTACCCTAATGTAATGGAGGATTTGAAGGCTCTGAGTGCTTCAGGGGACATCTACTTGCTATCAAATTCACAAGAGGACATTGCATACCCAAATGATTTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAAACATCCCGAACGACATGCTGGACGTGGAGAAGGAGCTGCTGAAAATCGGTTTGAAGCCGGCGACAAACACTGCAGAGAGGAGAGCTGCTGCACAGACGCATGGCATATCGAATAAACCAAAGGATAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCATCTTCCCGAGCTTTTCCAGAACCTTAACGGCAGCAGTTCCCGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

286

Amino Acids

32.43

Weight (kDa)

9.46

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFA2_Winged_2	PF18121	138 - 192	8.1e-16	TFA2 Winged helix domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AciI	CCGC	2 cut(s)	125, 461
AcsI	RAATTY	3 cut(s)	26, 547, 608
AcuI	CTGAAG	2 cut(s)	173, 507
AcyI	GRCGYC	1 cut(s)	278
AgsI	TTSAA	5 cut(s)	31, 171, 508, 583, 688
AjiI	CACGTC	1 cut(s)	658
AluBI	AGCT	9 cut(s)	19, 155, 215, 227, 424, 617, 670, 719, 823
AluI	AGCT	9 cut(s)	19, 155, 215, 227, 424, 617, 670, 719, 823
Alw21I	GWGCWC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	818
ApeKI	GCWGC	5 cut(s)	152, 670, 719, 722, 843
ApoI	RAATTY	3 cut(s)	26, 547, 608
Asp700I	GAANNNNTTC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	853
AsuHPI	GGTGA	2 cut(s)	448, 793
AsuNHI	GCTAGC	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	818
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	5 cut(s)	164, 657, 706, 709, 855
BccI	CCATC	3 cut(s)	365, 446, 819
BceAI	ACGGC	1 cut(s)	856
BcgI	CGANNNNNNTGC	2 cut(s)	631, 665
BcnI	CCSGG	1 cut(s)	853
BfaI	CTAG	2 cut(s)	20, 269
BfmI	CTRYAG	1 cut(s)	705
BisI	GCNGC	6 cut(s)	126, 153, 671, 720, 723, 844
BlsI	GCNGC	6 cut(s)	127, 154, 672, 721, 724, 845
Bme1390I	CCNGG	1 cut(s)	853
BmeT110I	CYCGRG	1 cut(s)	818
BmgBI	CACGTC	1 cut(s)	658
BmrFI	CCNGG	1 cut(s)	853
BmsI	GCATC	1 cut(s)	139
BmtI	GCTAGC	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	853
BsaHI	GRCGYC	1 cut(s)	278
Bse118I	RCCGGY	1 cut(s)	691
Bse3DI	GCAATG	2 cut(s)	69, 561
BseGI	GGATG	1 cut(s)	636
BseMI	GCAATG	2 cut(s)	69, 561
BseMII	CTCAG	1 cut(s)	506
BseRI	GAGGAG	1 cut(s)	727
BseXI	GCAGC	5 cut(s)	164, 657, 706, 709, 855
BsgI	GTGCAG	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	818
BsiSI	CCGG	2 cut(s)	692, 853
BslFI	GGGAC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	818
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	247, 469, 780
BspACI	CCGC	2 cut(s)	125, 461
BspCNI	CTCAG	1 cut(s)	507
BspMAI	CTGCAG	1 cut(s)	709
BspOI	GCTAGC	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	69, 561
BsrFI	RCCGGY	1 cut(s)	691
BssAI	RCCGGY	1 cut(s)	691
BssMI	GATC	3 cut(s)	247, 469, 780
BssNI	GRCGYC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	4 cut(s)	123, 270, 318, 693
BstDEI	CTNAG	1 cut(s)	515
BstF5I	GGATG	1 cut(s)	636
BstKTI	GATC	3 cut(s)	250, 472, 783
BstMBI	GATC	3 cut(s)	247, 469, 780
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 142, 326, 518
BstNSI	RCATGY	2 cut(s)	320, 652
BstSCI	CCNGG	1 cut(s)	851
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	5 cut(s)	164, 657, 706, 709, 855
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	1 cut(s)	636
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	4 cut(s)	123, 270, 318, 693
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	691
CseI	GACGC	3 cut(s)	286, 488, 739
CviAII	CATG	4 cut(s)	305, 317, 649, 734
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	3 cut(s)	249, 471, 782
DpnII	GATC	3 cut(s)	247, 469, 780
DraI	TTTAAA	1 cut(s)	613
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	2 cut(s)	173, 507
Eco88I	CYCGRG	1 cut(s)	818
EcoICRI	GAGCTC	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	4 cut(s)	308, 320, 652, 737
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	4 cut(s)	304, 316, 648, 733
Fnu4HI	GCNGC	6 cut(s)	126, 153, 671, 720, 723, 844
FokI	GGATG	1 cut(s)	623
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	6 cut(s)	126, 153, 671, 720, 723, 844
FspBI	CTAG	2 cut(s)	20, 269
GluI	GCNGC	6 cut(s)	126, 153, 671, 720, 723, 844
HapII	CCGG	2 cut(s)	692, 853
HgaI	GACGC	3 cut(s)	286, 488, 739
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	4 cut(s)	308, 320, 652, 737
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	2 cut(s)	692, 853
HphI	GGTGA	2 cut(s)	448, 793
Hpy188I	TCNGA	3 cut(s)	192, 357, 516
Hpy188III	TCNNGA	4 cut(s)	81, 640, 818, 829
HpyAV	CCTTC	4 cut(s)	258, 372, 502, 658
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	5 cut(s)	152, 316, 566, 707, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 142, 326, 518
HpyF3I	CTNAG	1 cut(s)	515
HpySE526I	ACGT	1 cut(s)	657
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	4 cut(s)	308, 320, 652, 737
KroI	GCCGGC	1 cut(s)	691
KroNI	GCCGGC	1 cut(s)	693
Kzo9I	GATC	3 cut(s)	247, 469, 780
LmnI	GCTCC	4 cut(s)	160, 220, 224, 667
Lsp1109I	GCAGC	5 cut(s)	164, 657, 706, 709, 855
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	2 cut(s)	20, 269
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	3 cut(s)	249, 471, 782
MboI	GATC	3 cut(s)	247, 469, 780
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	3 cut(s)	26, 547, 608
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	96, 493, 550, 705
Mph1103I	ATGCAT	1 cut(s)	318
MroNI	GCCGGC	1 cut(s)	691
MroXI	GAANNNNTTC	1 cut(s)	94
MseI	TTAA	6 cut(s)	198, 344, 408, 594, 612, 837
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	2 cut(s)	692, 853
MspR9I	CCNGG	1 cut(s)	853
MwoI	GCNNNNNNNGC	4 cut(s)	112, 142, 326, 518
NaeI	GCCGGC	1 cut(s)	693
NciI	CCSGG	1 cut(s)	853
NdeII	GATC	3 cut(s)	247, 469, 780
NgoMIV	GCCGGC	1 cut(s)	691
NheI	GCTAGC	1 cut(s)	268
NlaIII	CATG	4 cut(s)	308, 320, 652, 737
NmuCI	GTSAC	1 cut(s)	626
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	2 cut(s)	320, 652
PaeI	GCATGC	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PdiI	GCCGGC	1 cut(s)	693
PdmI	GAANNNNTTC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	352
PfoI	TCCNGGA	1 cut(s)	851
PkrI	GCNGC	6 cut(s)	127, 154, 672, 721, 724, 845
PsiI	TTATAA	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	709
PstNI	CAGNNNCTG	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	369
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	6 cut(s)	198, 344, 408, 594, 612, 837
SatI	GCNGC	6 cut(s)	126, 153, 671, 720, 723, 844
Sau3AI	GATC	3 cut(s)	247, 469, 780
ScrFI	CCNGG	1 cut(s)	853
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	705
SmiMI	CAYNNNNRTG	1 cut(s)	369
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	3 cut(s)	26, 547, 608
SsiI	CCGC	2 cut(s)	125, 461
SspMI	CTAG	2 cut(s)	20, 269
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	851
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	3 cut(s)	65, 101, 743
TasI	AATT	3 cut(s)	26, 547, 608
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	6 cut(s)	198, 344, 408, 594, 612, 837
Tru9I	TTAA	6 cut(s)	198, 344, 408, 594, 612, 837
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	5 cut(s)	152, 670, 719, 722, 843
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	2 cut(s)	309, 420
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	709
XapI	RAATTY	3 cut(s)	26, 547, 608
XceI	RCATGY	2 cut(s)	320, 652
XmnI	GAANNNNTTC	1 cut(s)	94
XspI	CTAG	2 cut(s)	20, 269
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.