Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Forward (+)

10468541 .. 10471301

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G094900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCACTAAAAGAAAGCTTAGAAAGATTTAAGAAGCAGCAAGAGAAGTGCCAGACAACCCTTTCCAGCATTGCCTCTACCAAGGCTGCGGCAGCTCCGAGACCCGCTCCTGCAGCAGCTAGGGCTCCTCCTCCAGCTGTCAAATTTTCAAATGATACAGAGAGACTCCAACACATTAATAGCATCCGGAAAGGCCCTGTTGGAGCTCAGATCAAGCGTGTTATAGACCTGCTGTTGGAGACAAGGCAAGCCTTTACGCCAGAGCAAATTAATGAAGCATGTTATGTTGATGCGAATGCTAACAAAGCTGTCTTTGACAGTCTGAGGAATAACCCAAAAGTTTATTATGATGGGAGGCGCTTCTCTTATAAGTCCAAGCATAATGTCACGGATAAAAACCAGCTTCGTTCTTTAATACGGAAATATCCAGAGGGCATAGCTGTCATTGATCTCAAGGATGCATACCCGAATGTGATGGACGATTTGCAGGCTTTGAAAGCTGCAGGTGACATCTGGCTGCTTTCAAACTTTGATTCACAAGAGGACATAGCATATCCAAATGACCCCAGGTTGCCTGCGATGAATGTTGATGATGAGCTAAAGGTGCTCTTTAGGTCGATTGAATTACCTCGTGATATGATTGACATTGAGAAAGAACTCCAAAAGAATGGGATGAAGCCGGCAACGGATACTGCAAAGAGGAGGGCCTTGGCTCAGAGTCAAGGCATTCCTAACAAAGCCAAACCCAAGAAGAAGAAGCACGAGATTAGCAAGAGGACAAAGCTTACAAACGCCCATCTTCCAGAGCTATTTTCCAGACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

275

Amino Acids

30.92

Weight (kDa)

9.66

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AarI	CACCTGC	1 cut(s)	494
Acc36I	ACCTGC	2 cut(s)	237, 494
AccBSI	CCGCTC	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	2 cut(s)	89, 105
AcsI	RAATTY	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	4 cut(s)	150, 496, 525, 623
AjnI	CCWGG	1 cut(s)	566
Alw21I	GWGCWC	2 cut(s)	208, 609
Alw26I	GTCTC	3 cut(s)	94, 157, 233
Aor13HI	TCCGGA	1 cut(s)	186
AoxI	GGCC	2 cut(s)	193, 705
ApeKI	GCWGC	7 cut(s)	37, 86, 92, 113, 116, 500, 517
ApoI	RAATTY	1 cut(s)	143
AseI	ATTAAT	2 cut(s)	177, 270
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	194, 705
AsuHPI	GGTGA	1 cut(s)	518
BanII	GRGCYC	2 cut(s)	127, 208
BauI	CACGAG	2 cut(s)	630, 761
Bbv12I	GWGCWC	2 cut(s)	208, 609
BbvI	GCAGC	7 cut(s)	49, 73, 104, 125, 128, 487, 504
BccI	CCATC	3 cut(s)	344, 469, 804
BciT130I	CCWGG	1 cut(s)	568
BciVI	GTATCC	1 cut(s)	682
BcoDI	GTCTC	3 cut(s)	94, 157, 233
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	2 cut(s)	111, 501
BfoI	RGCGCY	1 cut(s)	361
BfuAI	ACCTGC	2 cut(s)	237, 494
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	8 cut(s)	38, 87, 90, 93, 114, 117, 501, 518
BlsI	GCNGC	8 cut(s)	39, 88, 91, 94, 115, 118, 502, 519
Bme1390I	CCNGG	1 cut(s)	568
BmgT120I	GGNCC	2 cut(s)	194, 705
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	568
BmsI	GCATC	3 cut(s)	192, 280, 448
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BpmI	CTGGAG	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	81, 566, 708
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	679
Bse3DI	GCAATG	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	3 cut(s)	81, 566, 708
BseGI	GGATG	3 cut(s)	183, 463, 678
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	221, 314, 728
BseRI	GAGGAG	3 cut(s)	117, 120, 715
BseXI	GCAGC	7 cut(s)	49, 73, 104, 125, 128, 487, 504
BshFI	GGCC	2 cut(s)	195, 707
BsiHKAI	GWGCWC	2 cut(s)	208, 609
BsiSI	CCGG	2 cut(s)	187, 680
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	3 cut(s)	94, 157, 233
BsmI	GAATGC	2 cut(s)	301, 726
BsnI	GGCC	2 cut(s)	195, 707
Bso31I	GGTCTC	1 cut(s)	94
Bsp1286I	GDGCHC	3 cut(s)	127, 208, 609
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	210, 448
BspACI	CCGC	2 cut(s)	89, 105
BspANI	GGCC	2 cut(s)	195, 707
BspCNI	CTCAG	3 cut(s)	220, 315, 727
BspEI	TCCGGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	126
BspMAI	CTGCAG	2 cut(s)	115, 505
BspMI	ACCTGC	2 cut(s)	237, 494
BspTNI	GGTCTC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	679
BssAI	RCCGGY	1 cut(s)	679
BssECI	CCNNGG	3 cut(s)	81, 566, 708
BssMI	GATC	2 cut(s)	210, 448
BssSI	CACGAG	2 cut(s)	630, 761
BssT1I	CCWWGG	2 cut(s)	81, 708
Bst2BI	CACGAG	2 cut(s)	630, 761
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	249, 489, 576, 681
BstDEI	CTNAG	4 cut(s)	19, 207, 323, 714
BstF5I	GGATG	3 cut(s)	183, 463, 678
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	2 cut(s)	213, 451
BstMAI	GTCTC	3 cut(s)	94, 157, 233
BstMBI	GATC	2 cut(s)	210, 448
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 113, 122, 305, 497, 604
BstNI	CCWGG	1 cut(s)	568
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	566
BstSFI	CTRYAG	2 cut(s)	111, 501
BstV1I	GCAGC	7 cut(s)	49, 73, 104, 125, 128, 487, 504
BstXI	CCANNNNNNTGG	1 cut(s)	668
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	2 cut(s)	195, 707
BtgZI	GCGATG	1 cut(s)	593
BtsCI	GGATG	3 cut(s)	183, 463, 678
BveI	ACCTGC	2 cut(s)	237, 494
Cac8I	GCNNGC	4 cut(s)	249, 489, 576, 681
CfoI	GCGC	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	679
Cfr13I	GGNCC	2 cut(s)	194, 705
CviAII	CATG	1 cut(s)	279
DdeI	CTNAG	4 cut(s)	19, 207, 323, 714
DpnI	GATC	2 cut(s)	212, 450
DpnII	GATC	2 cut(s)	210, 448
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	81, 708
Eco24I	GRGCYC	2 cut(s)	127, 208
Eco31I	GGTCTC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	206
EcoO109I	RGGNCCY	2 cut(s)	194, 705
EcoRII	CCWGG	1 cut(s)	566
EcoT14I	CCWWGG	2 cut(s)	81, 708
EcoT22I	ATGCAT	1 cut(s)	463
EcoT38I	GRGCYC	2 cut(s)	127, 208
ErhI	CCWWGG	2 cut(s)	81, 708
FaeI	CATG	1 cut(s)	282
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	1 cut(s)	278
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	8 cut(s)	38, 87, 90, 93, 114, 117, 501, 518
FokI	GGATG	3 cut(s)	170, 470, 685
FriOI	GRGCYC	2 cut(s)	127, 208
Fsp4HI	GCNGC	8 cut(s)	38, 87, 90, 93, 114, 117, 501, 518
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	8 cut(s)	38, 87, 90, 93, 114, 117, 501, 518
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	2 cut(s)	195, 707
HapII	CCGG	2 cut(s)	187, 680
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HindIII	AAGCTT	2 cut(s)	16, 782
HinfI	GANTC	3 cut(s)	165, 533, 718
HpaII	CCGG	2 cut(s)	187, 680
HphI	GGTGA	1 cut(s)	518
Hpy188I	TCNGA	4 cut(s)	99, 210, 324, 717
Hpy188III	TCNNGA	5 cut(s)	187, 428, 632, 803, 816
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	5 cut(s)	113, 461, 487, 503, 695
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 113, 122, 305, 497, 604
HpyF3I	CTNAG	4 cut(s)	19, 207, 323, 714
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	1 cut(s)	358
Kpn2I	TCCGGA	1 cut(s)	186
KroI	GCCGGC	1 cut(s)	679
KroNI	GCCGGC	1 cut(s)	681
Kzo9I	GATC	2 cut(s)	210, 448
LmnI	GCTCC	4 cut(s)	100, 112, 130, 203
Lsp1109I	GCAGC	7 cut(s)	49, 73, 104, 125, 128, 487, 504
LweI	GCATC	3 cut(s)	192, 280, 448
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	3 cut(s)	3, 385, 506
MalI	GATC	2 cut(s)	212, 450
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	2 cut(s)	210, 448
MboII	GAAGA	3 cut(s)	763, 766, 791
MhlI	GDGCHC	3 cut(s)	127, 208, 609
MluCI	AATT	3 cut(s)	143, 267, 623
MlyI	GAGTC	2 cut(s)	159, 727
MmeI	TCCRAC	3 cut(s)	181, 193, 216
Mph1103I	ATGCAT	1 cut(s)	463
MroI	TCCGGA	1 cut(s)	186
MroNI	GCCGGC	1 cut(s)	679
MseI	TTAA	4 cut(s)	30, 177, 270, 413
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	187, 680
MspR9I	CCNGG	1 cut(s)	568
Mva1269I	GAATGC	2 cut(s)	301, 726
MvaI	CCWGG	1 cut(s)	568
MwoI	GCNNNNNNNGC	6 cut(s)	92, 113, 122, 305, 497, 604
NaeI	GCCGGC	1 cut(s)	681
NdeII	GATC	2 cut(s)	210, 448
NgoMIV	GCCGGC	1 cut(s)	679
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	3 cut(s)	3, 385, 506
NsiI	ATGCAT	1 cut(s)	463
NspI	RCATGY	1 cut(s)	282
PaqCI	CACCTGC	1 cut(s)	494
PctI	GAATGC	2 cut(s)	301, 726
PdiI	GCCGGC	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	8 cut(s)	39, 88, 91, 94, 115, 118, 502, 519
PleI	GAGTC	2 cut(s)	159, 726
PpsI	GAGTC	2 cut(s)	159, 726
PshBI	ATTAAT	2 cut(s)	177, 270
PsiI	TTATAA	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	194, 705
PstI	CTGCAG	2 cut(s)	115, 505
PvuII	CAGCTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	4 cut(s)	30, 177, 270, 413
SatI	GCNGC	8 cut(s)	38, 87, 90, 93, 114, 117, 501, 518
Sau3AI	GATC	2 cut(s)	210, 448
Sau96I	GGNCC	2 cut(s)	194, 705
SchI	GAGTC	2 cut(s)	159, 727
ScrFI	CCNGG	1 cut(s)	568
SduI	GDGCHC	3 cut(s)	127, 208, 609
SfaNI	GCATC	3 cut(s)	192, 280, 448
SfcI	CTRYAG	2 cut(s)	111, 501
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	143, 267, 623
SsiI	CCGC	2 cut(s)	89, 105
SspMI	CTAG	1 cut(s)	120
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	566
StyI	CCWWGG	2 cut(s)	81, 708
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	617
TasI	AATT	3 cut(s)	143, 267, 623
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	4 cut(s)	30, 177, 270, 413
Tru9I	TTAA	4 cut(s)	30, 177, 270, 413
TseFI	GTSAC	3 cut(s)	3, 385, 506
TseI	GCWGC	7 cut(s)	37, 86, 92, 113, 116, 500, 517
Tsp45I	GTSAC	3 cut(s)	3, 385, 506
TspDTI	ATGAA	3 cut(s)	288, 596, 689
TspGWI	ACGGA	3 cut(s)	404, 433, 701
VspI	ATTAAT	2 cut(s)	177, 270
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	282
XspI	CTAG	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.