Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009374.1

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2527

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009374.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 835 bp

gatggcattgcaagaaagcttagatagattcaagaagcagcaagagaagtgccagtcgaccctgaccagcattgcctctaaaaaggccgcagcaaaccccagagctgttcccatagcagctgctagggctcctgctccacctattaaattttcaaatgatacagagagactccaacacattaatagcatacggaaaggcccagttggagctcagatcaagcgtgttatagacctgcttctagagacaaggcaggcctttactccagagctaatcaatgaacaatgttttgttgatgtgaatgccaacaaagctgtctttgacagtctgaggaataacccaaaagttcattatgatgggaagcgcttttcttataagtccaagcatgctctgaaggacaaaaatcaactccggtccttaatacggaaattttcagagggcatacctgtcattgatctgaaggattcatacccaacagtgatggaggatttgcaggctttgaaagctgcgggtgacatatggctactttcgaactttgattcacaagaggacattgcttatccaaatgaccccaggttgccttctactaaggtggatgatgagcttaaacttttcttcagggggattgaactgcctcgtgatatgctggacatagagagggatcttcagaagaatggtatgaagccggccacagacactgcaaagaggagggctgttgcccagagtcaaggcattcaagccaaatccaagcccaagaagaagaagaatgagatcagcaagaggaccaagttgaccaatgcccatcttccagagcttttcaaggatttgaaaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

277

Amino Acids

31.3

Weight (kDa)

9.74

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	57
AciI	CCGC	2 cut(s)	88, 507
AclWI	GGATC	1 cut(s)	667
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	2 cut(s)	147, 426
AcuI	CTGAAG	4 cut(s)	411, 477, 599, 648
AfeI	AGCGCT	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	7 cut(s)	32, 154, 500, 627, 735, 818, 827
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	9 cut(s)	19, 105, 120, 210, 269, 312, 504, 602, 812
AluI	AGCT	9 cut(s)	19, 105, 120, 210, 269, 312, 504, 602, 812
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	2 cut(s)	161, 237
AlwI	GGATC	1 cut(s)	667
AlwNI	CAGNNNCTG	1 cut(s)	696
Aor51HI	AGCGCT	1 cut(s)	363
AoxI	GGCC	4 cut(s)	85, 197, 253, 685
ApeKI	GCWGC	5 cut(s)	38, 90, 117, 120, 504
ApoI	RAATTY	2 cut(s)	147, 426
AseI	ATTAAT	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	3 cut(s)	198, 412, 781
AsuHPI	GGTGA	1 cut(s)	522
AsuII	TTCGAA	1 cut(s)	528
AvaII	GGWCC	2 cut(s)	412, 781
BanII	GRGCYC	2 cut(s)	131, 212
BarI	GAAGNNNNNNTAC	2 cut(s)	450, 482
BauI	CACGAG	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	5 cut(s)	50, 102, 107, 129, 491
BccI	CCATC	3 cut(s)	348, 473, 808
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	2 cut(s)	161, 237
BfaI	CTAG	3 cut(s)	124, 240, 833
BfoI	RGCGCY	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	6 cut(s)	39, 88, 91, 118, 121, 505
BlsI	GCNGC	6 cut(s)	40, 89, 92, 119, 122, 506
Bme1390I	CCNGG	1 cut(s)	572
Bme18I	GGWCC	2 cut(s)	412, 781
BmgT120I	GGNCC	3 cut(s)	198, 412, 781
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	572
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	2 cut(s)	53, 201
Bse3DI	GCAATG	3 cut(s)	6, 70, 550
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	1 cut(s)	599
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	3 cut(s)	6, 70, 550
BseMII	CTCAG	2 cut(s)	225, 318
BseNI	ACTGG	2 cut(s)	53, 201
BseRI	GAGGAG	1 cut(s)	719
BseXI	GCAGC	5 cut(s)	50, 102, 107, 129, 491
BshFI	GGCC	4 cut(s)	87, 199, 255, 687
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	410, 684
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	2 cut(s)	161, 237
BsmI	GAATGC	2 cut(s)	305, 730
BsnI	GGCC	4 cut(s)	87, 199, 255, 687
Bsp119I	TTCGAA	1 cut(s)	528
Bsp1286I	GDGCHC	2 cut(s)	131, 212
Bsp143I	GATC	4 cut(s)	214, 452, 659, 769
BspACI	CCGC	2 cut(s)	88, 507
BspANI	GGCC	4 cut(s)	87, 199, 255, 687
BspCNI	CTCAG	2 cut(s)	224, 319
BspLI	GGNNCC	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	667
BspT104I	TTCGAA	1 cut(s)	528
BsrDI	GCAATG	3 cut(s)	6, 70, 550
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	2 cut(s)	53, 201
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	4 cut(s)	214, 452, 659, 769
BssSI	CACGAG	1 cut(s)	634
Bst2BI	CACGAG	1 cut(s)	634
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	324, 476
BstBI	TTCGAA	1 cut(s)	528
BstC8I	GCNNGC	4 cut(s)	253, 385, 493, 685
BstDEI	CTNAG	4 cut(s)	20, 211, 327, 586
BstF5I	GGATG	1 cut(s)	599
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	4 cut(s)	217, 455, 662, 772
BstMAI	GTCTC	2 cut(s)	161, 237
BstMBI	GATC	4 cut(s)	214, 452, 659, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 309, 501
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	570
BstV1I	GCAGC	5 cut(s)	50, 102, 107, 129, 491
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	4 cut(s)	87, 199, 255, 687
BtsCI	GGATG	1 cut(s)	599
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	2 cut(s)	481, 694
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	253, 385, 493, 685
CaiI	CAGNNNCTG	1 cut(s)	696
CfoI	GCGC	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	3 cut(s)	198, 412, 781
CviAII	CATG	1 cut(s)	384
DdeI	CTNAG	4 cut(s)	20, 211, 327, 586
DpnI	GATC	4 cut(s)	216, 454, 661, 771
DpnII	GATC	4 cut(s)	214, 452, 659, 769
EaeI	YGGCCR	1 cut(s)	685
Ecl136II	GAGCTC	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	131, 212
Eco47I	GGWCC	2 cut(s)	412, 781
Eco47III	AGCGCT	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	210
Eco57I	CTGAAG	4 cut(s)	411, 477, 599, 648
EcoICRI	GAGCTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	570
EcoT38I	GRGCYC	2 cut(s)	131, 212
FaeI	CATG	1 cut(s)	387
FatI	CATG	1 cut(s)	383
FauI	CCCGC	1 cut(s)	500
FauNDI	CATATG	1 cut(s)	516
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	6 cut(s)	39, 88, 91, 118, 121, 505
FokI	GGATG	1 cut(s)	606
FriOI	GRGCYC	2 cut(s)	131, 212
Fsp4HI	GCNGC	6 cut(s)	39, 88, 91, 118, 121, 505
FspBI	CTAG	3 cut(s)	124, 240, 833
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	6 cut(s)	39, 88, 91, 118, 121, 505
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	4 cut(s)	87, 199, 255, 687
HapII	CCGG	2 cut(s)	410, 684
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	1 cut(s)	387
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HincII	GTYRAC	2 cut(s)	58, 790
HindII	GTYRAC	2 cut(s)	58, 790
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	5 cut(s)	28, 169, 462, 537, 722
HpaII	CCGG	2 cut(s)	410, 684
HphI	GGTGA	1 cut(s)	522
Hpy166II	GTNNAC	2 cut(s)	58, 790
Hpy188I	TCNGA	6 cut(s)	214, 328, 391, 434, 457, 667
Hpy188III	TCNNGA	5 cut(s)	32, 240, 264, 636, 807
Hpy8I	GTNNAC	2 cut(s)	58, 790
HpyAV	CCTTC	3 cut(s)	386, 452, 589
HpyCH4III	ACNGT	2 cut(s)	324, 476
HpyCH4V	TGCA	3 cut(s)	11, 491, 699
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 309, 501
HpyF3I	CTNAG	4 cut(s)	20, 211, 327, 586
Hsp92II	CATG	1 cut(s)	387
HspAI	GCGC	1 cut(s)	362
KroI	GCCGGC	1 cut(s)	683
KroNI	GCCGGC	1 cut(s)	685
Kzo9I	GATC	4 cut(s)	214, 452, 659, 769
LmnI	GCTCC	3 cut(s)	134, 140, 207
Lsp1109I	GCAGC	5 cut(s)	50, 102, 107, 129, 491
MaeI	CTAG	3 cut(s)	124, 240, 833
MaeIII	GTNAC	1 cut(s)	510
MalI	GATC	4 cut(s)	216, 454, 661, 771
MboI	GATC	4 cut(s)	214, 452, 659, 769
MboII	GAAGA	7 cut(s)	605, 654, 680, 767, 770, 773, 795
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	2 cut(s)	131, 212
MluCI	AATT	2 cut(s)	147, 426
MlyI	GAGTC	2 cut(s)	163, 731
MmeI	TCCRAC	2 cut(s)	185, 197
MroNI	GCCGGC	1 cut(s)	683
MseI	TTAA	4 cut(s)	145, 181, 417, 604
MslI	CAYNNNNRTG	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	2 cut(s)	410, 684
MspR9I	CCNGG	1 cut(s)	572
Mva1269I	GAATGC	2 cut(s)	305, 730
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	3 cut(s)	126, 309, 501
NaeI	GCCGGC	1 cut(s)	685
NdeI	CATATG	1 cut(s)	516
NdeII	GATC	4 cut(s)	214, 452, 659, 769
NgoMIV	GCCGGC	1 cut(s)	683
NlaIII	CATG	1 cut(s)	387
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	510
NspI	RCATGY	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	528
PaeI	GCATGC	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	255
PctI	GAATGC	2 cut(s)	305, 730
PdiI	GCCGGC	1 cut(s)	685
PfeI	GAWTC	3 cut(s)	28, 462, 537
PkrI	GCNGC	6 cut(s)	40, 89, 92, 119, 122, 506
PleI	GAGTC	2 cut(s)	163, 730
PpsI	GAGTC	2 cut(s)	163, 730
PshBI	ATTAAT	1 cut(s)	181
PsiI	TTATAA	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	3 cut(s)	198, 412, 781
PstNI	CAGNNNCTG	1 cut(s)	696
PsuI	RGATCY	1 cut(s)	659
PvuII	CAGCTG	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	352
SacI	GAGCTC	1 cut(s)	212
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	4 cut(s)	145, 181, 417, 604
SatI	GCNGC	6 cut(s)	39, 88, 91, 118, 121, 505
Sau3AI	GATC	4 cut(s)	214, 452, 659, 769
Sau96I	GGNCC	3 cut(s)	198, 412, 781
SchI	GAGTC	2 cut(s)	163, 731
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	2 cut(s)	131, 212
SfuI	TTCGAA	1 cut(s)	528
SinI	GGWCC	2 cut(s)	412, 781
SmiMI	CAYNNNNRTG	1 cut(s)	352
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	2 cut(s)	147, 426
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	2 cut(s)	88, 507
SspMI	CTAG	3 cut(s)	124, 240, 833
SstI	GAGCTC	1 cut(s)	212
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	570
TaaI	ACNGT	2 cut(s)	324, 476
TaqI	TCGA	2 cut(s)	57, 528
TasI	AATT	2 cut(s)	147, 426
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	3 cut(s)	28, 462, 537
Tru1I	TTAA	4 cut(s)	145, 181, 417, 604
Tru9I	TTAA	4 cut(s)	145, 181, 417, 604
TscAI	CASTG	2 cut(s)	481, 701
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	5 cut(s)	38, 90, 117, 120, 504
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	4 cut(s)	292, 336, 454, 693
TspGWI	ACGGA	2 cut(s)	206, 437
TspRI	CASTG	2 cut(s)	481, 701
VpaK11BI	GGWCC	2 cut(s)	412, 781
VspI	ATTAAT	1 cut(s)	181
XapI	RAATTY	2 cut(s)	147, 426
XbaI	TCTAGA	1 cut(s)	239
XceI	RCATGY	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	3 cut(s)	124, 240, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.