Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Forward (+)

15004586 .. 15005887

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1098300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGTTCAAGAAGCAGCAAGAAAGTGCGCAGTCACTTCTTATCGGCATTGCATCTGATAGGGCCACAGCAACGCTGAGACCTGCGCCTGCGGTCACTAAAGCTCCTGCTCCAGCTGTCAAATTTTCAAATGATACTGAGAGGCTTCAACATATTAATACCATACGGAAAGCCCCTGTTGGAGCTCAGATGAAGCGTGTTATAGACCTGCTGCGGGAGGTTCGAATCAAACTTACATTTCCTCCCATTATTTGCTTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

87

Amino Acids

9.52

Weight (kDa)

10.65

Isoelectric Point (pI)

62.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	27
Acc36I	ACCTGC	2 cut(s)	88, 213
AciI	CCGC	2 cut(s)	89, 211
AcsI	RAATTY	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	7, 126, 146
AluBI	AGCT	3 cut(s)	101, 113, 182
AluI	AGCT	3 cut(s)	101, 113, 182
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	70
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	13, 208
ApoI	RAATTY	1 cut(s)	119
AseI	ATTAAT	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	28, 85
AspS9I	GGNCC	1 cut(s)	60
AsuII	TTCGAA	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	25, 195
BcoDI	GTCTC	1 cut(s)	70
BfuAI	ACCTGC	2 cut(s)	88, 213
BisI	GCNGC	2 cut(s)	14, 209
BlsI	GCNGC	2 cut(s)	15, 210
BmgT120I	GGNCC	1 cut(s)	60
BmsI	GCATC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	70
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 223, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	65, 126, 197
BseXI	GCAGC	2 cut(s)	25, 195
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	89, 211
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	3 cut(s)	66, 127, 196
BspMI	ACCTGC	2 cut(s)	88, 213
BspT104I	TTCGAA	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	3 cut(s)	74, 135, 183
BstHHI	GCGC	2 cut(s)	28, 85
BstMAI	GTCTC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	25, 195
BsuRI	GGCC	1 cut(s)	62
BveI	ACCTGC	2 cut(s)	88, 213
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	2 cut(s)	28, 85
Cfr13I	GGNCC	1 cut(s)	60
CviJI	RGCY	6 cut(s)	62, 101, 113, 142, 170, 182
CviKI_1	RGCY	6 cut(s)	62, 101, 113, 142, 170, 182
DdeI	CTNAG	3 cut(s)	74, 135, 183
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	184
FaiI	YATR	3 cut(s)	150, 161, 200
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	14, 209
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	14, 209
FspI	TGCGCA	1 cut(s)	27
GlaI	GCGC	2 cut(s)	27, 84
GluI	GCNGC	2 cut(s)	14, 209
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	2 cut(s)	28, 85
Hin6I	GCGC	2 cut(s)	26, 83
HinP1I	GCGC	2 cut(s)	26, 83
HinfI	GANTC	1 cut(s)	222
Hpy188I	TCNGA	2 cut(s)	55, 186
Hpy188III	TCNNGA	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	50
HpyF3I	CTNAG	3 cut(s)	74, 135, 183
HspAI	GCGC	2 cut(s)	26, 83
LmnI	GCTCC	3 cut(s)	106, 112, 179
LpnPI	CCDG	6 cut(s)	93, 99, 117, 123, 186, 218
Lsp1109I	GCAGC	2 cut(s)	25, 195
LweI	GCATC	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	30, 91
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	132, 208, 249
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	113
NmuCI	GTSAC	2 cut(s)	30, 91
NsbI	TGCGCA	1 cut(s)	27
NspV	TTCGAA	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	15, 210
PshBI	ATTAAT	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	14, 209
Sau96I	GGNCC	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	6 cut(s)	82, 103, 115, 184, 207, 219
SfaNI	GCATC	1 cut(s)	59
SfuI	TTCGAA	1 cut(s)	220
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	89, 211
SstI	GAGCTC	1 cut(s)	184
TaqI	TCGA	1 cut(s)	220
TasI	AATT	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	2 cut(s)	30, 91
TseI	GCWGC	2 cut(s)	13, 208
Tsp45I	GTSAC	2 cut(s)	30, 91
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	178
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.