Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Forward (+)

1169139 .. 1171912

Gene Structure 2774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCATTGCAAGAACAATTAGATAGATTCAAGAAGCAGCAAGAGAAATGCCAGTCAACCCTGACCAGCATTGCCTCTAAAAAGGCTGCAGCAAACCCCAGAGCTGTTCCCATAGCAGCTGCTAAAGCTCCCGCTCCAGCTGTCAAATTCTCTAATGATACAGAGAGACTCCAACACATTAATAGCATAAGGAAAGGGCCTGTTGGAGCTCAGATCAAGCGTGTTATAGACCTGCTTCTAGAGACAAGGCAGGCCTTTACGCCAGAGCTAATTAATGAAGCATGTTATGTTGATGTGAATGCCAACAAAGCTGTCTTTGACAGTCTGAGGAATAATCCAAAAGTTCACTATGACGGGAAGCGCTTTTCTTATAAGTCCAAGCATGCTCTGAAAGACAAAAATCAACTCCGGTCCTTAATACGGAAATTTTCAGAGGGCATACCTGTCATTGATCTGAAGGATTCATATCCAACTGTGATGGAGGACTTGCAGGCTTTGAAAGCTGCGGGTGACATATGGCTACTTTCGAACTTCGATTCACAAGAGGACATTGCTTATCCAAATGACCCCAGGTTGCCTTCTTGTAAGGTGGATGATGAACTTAAAACTTTCTTCAGGGAGATTGAATTGCCTCGTGATATGCTAGACATTGAGAGGGATCTCCAGAAGAATGGTATGAAGCCGGCCACAGACACTGCAAAGAGGAGGGCGGTGGCGCAGAGTCAAGGCATTCAAGCCAAATCCAAGCCCAAGAAGAAGAAGAATGAGATCAGCAAGAGGACCAAGCTGACCAATGCCCATCTTCCAGAGCTTTTCAAGGACCTGAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

278

Amino Acids

31.35

Weight (kDa)

9.62

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFA2_Winged_2	PF18121	131 - 188	4.5e-17	TFA2 Winged helix domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	240
AccBSI	CCGCTC	1 cut(s)	134
AciI	CCGC	3 cut(s)	132, 506, 710
AclWI	GGATC	1 cut(s)	666
AcoI	YGGCCR	1 cut(s)	684
AcsI	RAATTY	2 cut(s)	146, 425
AcuI	CTGAAG	2 cut(s)	476, 598
AfeI	AGCGCT	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	5 cut(s)	31, 499, 626, 734, 817
AjnI	CCWGG	1 cut(s)	569
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	160, 236
AlwI	GGATC	1 cut(s)	666
AlwNI	CAGNNNCTG	1 cut(s)	695
Aor51HI	AGCGCT	1 cut(s)	362
AoxI	GGCC	3 cut(s)	197, 252, 684
ApeKI	GCWGC	6 cut(s)	37, 86, 89, 116, 119, 503
ApoI	RAATTY	2 cut(s)	146, 425
AseI	ATTAAT	2 cut(s)	180, 273
AspLEI	GCGC	2 cut(s)	363, 718
AspS9I	GGNCC	4 cut(s)	197, 411, 780, 820
AsuHPI	GGTGA	1 cut(s)	521
AsuII	TTCGAA	1 cut(s)	527
AvaII	GGWCC	3 cut(s)	411, 780, 820
BanII	GRGCYC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	6 cut(s)	49, 73, 101, 106, 128, 490
BccI	CCATC	2 cut(s)	472, 807
BciT130I	CCWGG	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	160, 236
BfaI	CTAG	2 cut(s)	239, 644
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	6 cut(s)	38, 87, 90, 117, 120, 504
BlsI	GCNGC	6 cut(s)	39, 88, 91, 118, 121, 505
Bme1390I	CCNGG	1 cut(s)	571
Bme18I	GGWCC	3 cut(s)	411, 780, 820
BmgT120I	GGNCC	4 cut(s)	197, 411, 780, 820
BmrFI	CCNGG	1 cut(s)	571
BpmI	CTGGAG	2 cut(s)	120, 647
Bpu14I	TTCGAA	1 cut(s)	527
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	569
BsaWI	WCCGGW	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse118I	RCCGGY	1 cut(s)	682
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	3 cut(s)	5, 69, 549
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	1 cut(s)	598
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMI	GCAATG	3 cut(s)	5, 69, 549
BseMII	CTCAG	2 cut(s)	224, 317
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	718
BseXI	GCAGC	6 cut(s)	49, 73, 101, 106, 128, 490
BshFI	GGCC	3 cut(s)	199, 254, 686
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	409, 683
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	2 cut(s)	160, 236
BsmI	GAATGC	2 cut(s)	304, 729
BsnI	GGCC	3 cut(s)	199, 254, 686
Bsp119I	TTCGAA	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	213, 451, 658, 768
BspACI	CCGC	3 cut(s)	132, 506, 710
BspANI	GGCC	3 cut(s)	199, 254, 686
BspCNI	CTCAG	2 cut(s)	223, 318
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	666
BspT104I	TTCGAA	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	134
BsrDI	GCAATG	3 cut(s)	5, 69, 549
BsrFI	RCCGGY	1 cut(s)	682
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	4 cut(s)	213, 451, 658, 768
BssSI	CACGAG	1 cut(s)	633
Bst2BI	CACGAG	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	2 cut(s)	323, 475
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	4 cut(s)	252, 384, 492, 684
BstDEI	CTNAG	2 cut(s)	210, 326
BstF5I	GGATG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	2 cut(s)	363, 718
BstKTI	GATC	4 cut(s)	216, 454, 661, 771
BstMAI	GTCTC	2 cut(s)	160, 236
BstMBI	GATC	4 cut(s)	213, 451, 658, 768
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 308, 500
BstNI	CCWGG	1 cut(s)	571
BstNSI	RCATGY	2 cut(s)	285, 386
BstSCI	CCNGG	1 cut(s)	569
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	6 cut(s)	49, 73, 101, 106, 128, 490
BstX2I	RGATCY	1 cut(s)	658
BstXI	CCANNNNNNTGG	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	658
BsuRI	GGCC	3 cut(s)	199, 254, 686
BtsCI	GGATG	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	1 cut(s)	693
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	4 cut(s)	252, 384, 492, 684
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	2 cut(s)	363, 718
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	4 cut(s)	197, 411, 780, 820
CviAII	CATG	2 cut(s)	282, 383
DdeI	CTNAG	2 cut(s)	210, 326
DpnI	GATC	4 cut(s)	215, 453, 660, 770
DpnII	GATC	4 cut(s)	213, 451, 658, 768
EaeI	YGGCCR	1 cut(s)	684
Ecl136II	GAGCTC	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	211
Eco47I	GGWCC	3 cut(s)	411, 780, 820
Eco47III	AGCGCT	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	2 cut(s)	476, 598
EcoICRI	GAGCTC	1 cut(s)	209
EcoO109I	RGGNCCY	2 cut(s)	197, 820
EcoRII	CCWGG	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	2 cut(s)	285, 386
FatI	CATG	2 cut(s)	281, 382
FauI	CCCGC	2 cut(s)	139, 499
FauNDI	CATATG	1 cut(s)	515
Fnu4HI	GCNGC	6 cut(s)	38, 87, 90, 117, 120, 504
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	6 cut(s)	38, 87, 90, 117, 120, 504
FspBI	CTAG	2 cut(s)	239, 644
GlaI	GCGC	2 cut(s)	362, 717
GluI	GCNGC	6 cut(s)	38, 87, 90, 117, 120, 504
GsuI	CTGGAG	2 cut(s)	120, 647
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	3 cut(s)	199, 254, 686
HapII	CCGG	2 cut(s)	409, 683
HhaI	GCGC	2 cut(s)	363, 718
Hin1II	CATG	2 cut(s)	285, 386
Hin6I	GCGC	2 cut(s)	361, 716
HinP1I	GCGC	2 cut(s)	361, 716
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	5 cut(s)	27, 168, 461, 536, 721
HpaII	CCGG	2 cut(s)	409, 683
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	2 cut(s)	57, 346
Hpy188I	TCNGA	5 cut(s)	213, 327, 390, 433, 456
Hpy188III	TCNNGA	5 cut(s)	31, 239, 635, 664, 806
Hpy8I	GTNNAC	2 cut(s)	57, 346
HpyAV	CCTTC	2 cut(s)	451, 588
HpyCH4III	ACNGT	2 cut(s)	323, 475
HpyCH4V	TGCA	4 cut(s)	10, 89, 490, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 308, 500
HpyF3I	CTNAG	2 cut(s)	210, 326
Hsp92II	CATG	2 cut(s)	285, 386
HspAI	GCGC	2 cut(s)	361, 716
KroI	GCCGGC	1 cut(s)	682
KroNI	GCCGGC	1 cut(s)	684
Kzo9I	GATC	4 cut(s)	213, 451, 658, 768
LmnI	GCTCC	3 cut(s)	133, 139, 206
Lsp1109I	GCAGC	6 cut(s)	49, 73, 101, 106, 128, 490
MaeI	CTAG	2 cut(s)	239, 644
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	4 cut(s)	215, 453, 660, 770
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	4 cut(s)	213, 451, 658, 768
MboII	GAAGA	6 cut(s)	604, 679, 766, 769, 772, 794
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	6 cut(s)	17, 146, 270, 425, 626, 829
MlyI	GAGTC	2 cut(s)	162, 730
MmeI	TCCRAC	3 cut(s)	184, 196, 494
MroNI	GCCGGC	1 cut(s)	682
MseI	TTAA	4 cut(s)	180, 273, 416, 603
MspA1I	CMGCKG	2 cut(s)	119, 140
MspI	CCGG	2 cut(s)	409, 683
MspR9I	CCNGG	1 cut(s)	571
Mva1269I	GAATGC	2 cut(s)	304, 729
MvaI	CCWGG	1 cut(s)	571
MwoI	GCNNNNNNNGC	3 cut(s)	125, 308, 500
NaeI	GCCGGC	1 cut(s)	684
NdeI	CATATG	1 cut(s)	515
NdeII	GATC	4 cut(s)	213, 451, 658, 768
NgoMIV	GCCGGC	1 cut(s)	682
NlaIII	CATG	2 cut(s)	285, 386
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	2 cut(s)	285, 386
NspV	TTCGAA	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	386
PceI	AGGCCT	1 cut(s)	254
PctI	GAATGC	2 cut(s)	304, 729
PdiI	GCCGGC	1 cut(s)	684
PfeI	GAWTC	3 cut(s)	27, 461, 536
PkrI	GCNGC	6 cut(s)	39, 88, 91, 118, 121, 505
PleI	GAGTC	2 cut(s)	162, 729
PpsI	GAGTC	2 cut(s)	162, 729
PpuMI	RGGWCCY	1 cut(s)	820
PshBI	ATTAAT	2 cut(s)	180, 273
PsiI	TTATAA	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	820
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspPI	GGNCC	4 cut(s)	197, 411, 780, 820
PspPPI	RGGWCCY	1 cut(s)	820
PstI	CTGCAG	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	658
PvuII	CAGCTG	2 cut(s)	119, 140
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	4 cut(s)	180, 273, 416, 603
SatI	GCNGC	6 cut(s)	38, 87, 90, 117, 120, 504
Sau3AI	GATC	4 cut(s)	213, 451, 658, 768
Sau96I	GGNCC	4 cut(s)	197, 411, 780, 820
SchI	GAGTC	2 cut(s)	162, 730
ScrFI	CCNGG	1 cut(s)	571
SduI	GDGCHC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	527
SinI	GGWCC	3 cut(s)	411, 780, 820
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	6 cut(s)	17, 146, 270, 425, 626, 829
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	3 cut(s)	132, 506, 710
SspMI	CTAG	2 cut(s)	239, 644
SstI	GAGCTC	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	569
TaaI	ACNGT	2 cut(s)	323, 475
TaqI	TCGA	2 cut(s)	527, 534
TasI	AATT	6 cut(s)	17, 146, 270, 425, 626, 829
TfiI	GAWTC	3 cut(s)	27, 461, 536
Tru1I	TTAA	4 cut(s)	180, 273, 416, 603
Tru9I	TTAA	4 cut(s)	180, 273, 416, 603
TscAI	CASTG	1 cut(s)	700
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	6 cut(s)	37, 86, 89, 116, 119, 503
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	4 cut(s)	291, 453, 612, 692
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	1 cut(s)	700
VpaK11BI	GGWCC	3 cut(s)	411, 780, 820
VspI	ATTAAT	2 cut(s)	180, 273
XapI	RAATTY	2 cut(s)	146, 425
XbaI	TCTAGA	1 cut(s)	238
XceI	RCATGY	2 cut(s)	285, 386
XspI	CTAG	2 cut(s)	239, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.