pycom06g07450

Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
12100968 .. 12105443
4476 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g07450.1

Sequence Viewer

Length: 984 bp
ATGAGGTTACACTTGCCCCATAGGATTTGGATCCTTAAAACTCTGTCCCTCCTCTTTTCTCTCGTCGCTTTAGTAAGCATCCGATCCCCCCATTTGTCCTCTCATATCTCTTACAGTAGCAGCCTTCATCCGAGTCCTCTCGAGCTGTCTTCGATGGCGTTGAAAGAGAGTTTGAATAGGTTCAAGAAGCAGCAAGAGAGCGCACAGTCACTTCTTATCGGCATTGCATCTGATAGGGCCACAGCAACACCAAGACCTGCGCCTGCAGTCACTAAGGCTCCAGCTCCAGCTGTCAAATTTTCAAATGATACGGAGAGACTTCAACATATTAATAGCATACGGAAAGCCCCTGTTGGAGCTCAGATCAAGCGTGTTATAGACCTGTTGCGGGAGACAAGGCTTTCGTATACACCAGAGCAAATTAATCAAGAATGTTATGTCGATGTGAATGCTAACAAAGCTGTCTTTGACAGTCTGAGGAATAACCTAAAAGTTTCTTATGATGGGAAGAGCTTCTCTTATAAGTCCAAACATCGTATCATGGACAAAAAACAGCTTCTGTCCCTAGTACGGAAATTTTCAGAGGGTATACCGGTCATTGATCTCAAGGATGCTTACCCAAATGTGATGGACGATTTACAGGCTTTGAAAGCTTCGGGTGATATCTGGCTGCTTTCAAACTTTGATTCACAAGAGGACATAGCATATCCAAACGACCCCAGGTTGCCTGCCTCCAAGGTTGACGATGACCTTAAGGTGCTCTTTAGGGGGATTGAGTTGCCGCGTGATATGATTGACATTGAGAAAGAGCTCCAGAAGAATGGGATGAAGCCGGCCACGGATACTGCAAAAAGAAGGGCCTTGGCACAGAGTCAAGGCATTCCTAGCAAATCCAAACCCAAGAAGAAGAAGCACGAGATCACAAAGAGGACCAAGCTTACAAACGCCCATCTGCCGGAGCTTTTCCAAAACCTAAAGAACTAG

Protein Analysis

328

Amino Acids

36.9

Weight (kDa)

9.82

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIE_beta PF02186 121 - 180 5.2e-06 TFIIE beta subunit core domain
TFA2_Winged_2 PF18121 182 - 238 1.7e-17 TFA2 Winged helix domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
Acc36I ACCTGC 1 cut(s) 265
AccI GTMKAC 2 cut(s) 407, 589
AccII CGCG 1 cut(s) 784
AciI CCGC 2 cut(s) 388, 782
AclWI GGATC 3 cut(s) 25, 38, 78
AcoI YGGCCR 1 cut(s) 834
AcsI RAATTY 2 cut(s) 296, 575
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 3 cut(s) 388, 570, 955
AflII CTTAAG 1 cut(s) 752
AgeI ACCGGT 1 cut(s) 592
AgsI TTSAA 7 cut(s) 163, 175, 184, 303, 323, 649, 678
AjnI CCWGG 1 cut(s) 719
Alw21I GWGCWC 3 cut(s) 361, 762, 813
Alw26I GTCTC 2 cut(s) 310, 386
AlwI GGATC 3 cut(s) 25, 38, 78
AlwNI CAGNNNCTG 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 3 cut(s) 237, 834, 858
ApeKI GCWGC 3 cut(s) 120, 190, 670
ApoI RAATTY 2 cut(s) 296, 575
ArsI GACNNNNNNTTYG 2 cut(s) 385, 417
AseI ATTAAT 2 cut(s) 330, 423
AsiGI ACCGGT 1 cut(s) 592
Asp700I GAANNNNTTC 2 cut(s) 179, 512
AspLEI GCGC 2 cut(s) 203, 262
AspS9I GGNCC 3 cut(s) 237, 858, 930
AsuHPI GGTGA 1 cut(s) 671
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 930
BamHI GGATCC 1 cut(s) 30
BanII GRGCYC 2 cut(s) 361, 813
BauI CACGAG 1 cut(s) 914
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 3 cut(s) 361, 762, 813
BbvI GCAGC 3 cut(s) 132, 202, 657
BccI CCATC 4 cut(s) 148, 497, 622, 957
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 1 cut(s) 721
BciVI GTATCC 1 cut(s) 835
BcoDI GTCTC 2 cut(s) 310, 386
BfaI CTAG 3 cut(s) 566, 885, 982
BfmI CTRYAG 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 752
BfuAI ACCTGC 1 cut(s) 265
BfuI GTATCC 1 cut(s) 835
BisI GCNGC 4 cut(s) 121, 191, 671, 782
BlsI GCNGC 4 cut(s) 122, 192, 672, 783
Bme1390I CCNGG 1 cut(s) 721
Bme18I GGWCC 1 cut(s) 930
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 3 cut(s) 237, 858, 930
BmiI GGNNCC 2 cut(s) 32, 279
BmrFI CCNGG 1 cut(s) 721
BmsI GCATC 3 cut(s) 87, 236, 601
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 3 cut(s) 264, 270, 797
BpuEI CTTGAG 1 cut(s) 590
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 4 cut(s) 719, 735, 837, 861
BsaWI WCCGGW 1 cut(s) 592
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 3 cut(s) 388, 570, 955
Bse118I RCCGGY 2 cut(s) 592, 832
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 721
BseDI CCNNGG 4 cut(s) 719, 735, 837, 861
BseGI GGATG 4 cut(s) 78, 127, 616, 831
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 3 cut(s) 388, 570, 955
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 374, 467
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 132, 202, 657
Bsh1236I CGCG 1 cut(s) 784
BshFI GGCC 3 cut(s) 239, 836, 860
BshTI ACCGGT 1 cut(s) 592
BsiHKAI GWGCWC 3 cut(s) 361, 762, 813
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 3 cut(s) 593, 833, 956
BslFI GGGAC 2 cut(s) 31, 547
BslI CCNNNNNNNGG 3 cut(s) 388, 570, 955
BsmAI GTCTC 2 cut(s) 310, 386
BsmFI GGGAC 2 cut(s) 31, 547
BsmI GAATGC 2 cut(s) 454, 879
BsnI GGCC 3 cut(s) 239, 836, 860
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 3 cut(s) 361, 762, 813
Bsp143I GATC 5 cut(s) 30, 83, 363, 601, 918
BspACI CCGC 2 cut(s) 388, 782
BspANI GGCC 3 cut(s) 239, 836, 860
BspCNI CTCAG 2 cut(s) 373, 468
BspFNI CGCG 1 cut(s) 784
BspLI GGNNCC 2 cut(s) 32, 279
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 3 cut(s) 25, 38, 78
BspQI GCTCTTC 1 cut(s) 503
BspTI CTTAAG 1 cut(s) 752
BsrDI GCAATG 1 cut(s) 222
BsrFI RCCGGY 2 cut(s) 592, 832
BssAI RCCGGY 2 cut(s) 592, 832
BssECI CCNNGG 4 cut(s) 719, 735, 837, 861
BssMI GATC 5 cut(s) 30, 83, 363, 601, 918
BssNAI GTATAC 2 cut(s) 408, 590
BssSI CACGAG 1 cut(s) 914
BssT1I CCWWGG 2 cut(s) 735, 861
Bst1107I GTATAC 2 cut(s) 408, 590
Bst2BI CACGAG 1 cut(s) 914
Bst2UI CCWGG 1 cut(s) 721
Bst4CI ACNGT 3 cut(s) 116, 207, 473
Bst6I CTCTTC 1 cut(s) 503
BstAFI CTTAAG 1 cut(s) 752
BstC8I GCNNGC 3 cut(s) 264, 729, 834
BstDEI CTNAG 3 cut(s) 273, 360, 476
BstDSI CCRYGG 1 cut(s) 837
BstF5I GGATG 4 cut(s) 78, 127, 616, 831
BstFNI CGCG 1 cut(s) 784
BstHHI GCGC 2 cut(s) 203, 262
BstKTI GATC 5 cut(s) 33, 86, 366, 604, 921
BstMAI GTCTC 2 cut(s) 310, 386
BstMBI GATC 5 cut(s) 30, 83, 363, 601, 918
BstMWI GCNNNNNNNGC 3 cut(s) 458, 650, 885
BstNI CCWGG 1 cut(s) 721
BstSCI CCNGG 1 cut(s) 719
BstSFI CTRYAG 1 cut(s) 264
BstUI CGCG 1 cut(s) 784
BstV1I GCAGC 3 cut(s) 132, 202, 657
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 821
BstYI RGATCY 1 cut(s) 30
BstZ17I GTATAC 2 cut(s) 408, 590
BsuI GTATCC 1 cut(s) 835
BsuRI GGCC 3 cut(s) 239, 836, 860
BtgI CCRYGG 1 cut(s) 837
BtsCI GGATG 4 cut(s) 78, 127, 616, 831
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 264, 729, 834
CaiI CAGNNNCTG 1 cut(s) 559
CfoI GCGC 2 cut(s) 203, 262
Cfr10I RCCGGY 2 cut(s) 592, 832
Cfr13I GGNCC 3 cut(s) 237, 858, 930
Csp6I GTAC 1 cut(s) 569
CspAI ACCGGT 1 cut(s) 592
CviAII CATG 1 cut(s) 541
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 3 cut(s) 273, 360, 476
DpnI GATC 5 cut(s) 32, 85, 365, 603, 920
DpnII GATC 5 cut(s) 30, 83, 363, 601, 918
EaeI YGGCCR 1 cut(s) 834
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
Ecl136II GAGCTC 2 cut(s) 359, 811
Eco130I CCWWGG 2 cut(s) 735, 861
Eco24I GRGCYC 2 cut(s) 361, 813
Eco32I GATATC 1 cut(s) 664
Eco47I GGWCC 1 cut(s) 930
Eco53kI GAGCTC 2 cut(s) 359, 811
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 2 cut(s) 359, 811
EcoO109I RGGNCCY 1 cut(s) 858
EcoRII CCWGG 1 cut(s) 719
EcoRV GATATC 1 cut(s) 664
EcoT14I CCWWGG 2 cut(s) 735, 861
EcoT38I GRGCYC 2 cut(s) 361, 813
ErhI CCWWGG 2 cut(s) 735, 861
FaeI CATG 1 cut(s) 544
FalI AAGNNNNNCTT 2 cut(s) 746, 778
FaqI GGGAC 2 cut(s) 31, 547
FatI CATG 1 cut(s) 540
FauI CCCGC 1 cut(s) 381
FblI GTMKAC 2 cut(s) 407, 589
Fnu4HI GCNGC 4 cut(s) 121, 191, 671, 782
FokI GGATG 4 cut(s) 65, 114, 623, 838
FriOI GRGCYC 2 cut(s) 361, 813
Fsp4HI GCNGC 4 cut(s) 121, 191, 671, 782
FspBI CTAG 3 cut(s) 566, 885, 982
GlaI GCGC 2 cut(s) 202, 261
GluI GCNGC 4 cut(s) 121, 191, 671, 782
GsuI CTGGAG 3 cut(s) 264, 270, 797
HaeIII GGCC 3 cut(s) 239, 836, 860
HapII CCGG 3 cut(s) 593, 833, 956
HhaI GCGC 2 cut(s) 203, 262
Hin1II CATG 1 cut(s) 544
Hin6I GCGC 2 cut(s) 201, 260
HinP1I GCGC 2 cut(s) 201, 260
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HindIII AAGCTT 2 cut(s) 651, 935
HinfI GANTC 3 cut(s) 133, 686, 871
HpaII CCGG 3 cut(s) 593, 833, 956
HphI GGTGA 1 cut(s) 671
Hpy166II GTNNAC 3 cut(s) 408, 590, 742
Hpy188I TCNGA 6 cut(s) 83, 132, 232, 363, 477, 583
Hpy188III TCNNGA 4 cut(s) 140, 184, 428, 814
Hpy8I GTNNAC 3 cut(s) 408, 590, 742
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 134, 849
HpyCH4III ACNGT 3 cut(s) 116, 207, 473
HpyCH4V TGCA 3 cut(s) 227, 266, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 650, 885
HpyF3I CTNAG 3 cut(s) 273, 360, 476
Hsp92II CATG 1 cut(s) 544
HspAI GCGC 2 cut(s) 201, 260
KroI GCCGGC 1 cut(s) 832
KroNI GCCGGC 1 cut(s) 834
Kzo9I GATC 5 cut(s) 30, 83, 363, 601, 918
LguI GCTCTTC 1 cut(s) 503
LmnI GCTCC 5 cut(s) 283, 289, 356, 816, 958
Lsp1109I GCAGC 3 cut(s) 132, 202, 657
LweI GCATC 3 cut(s) 87, 236, 601
MaeI CTAG 3 cut(s) 566, 885, 982
MaeIII GTNAC 3 cut(s) 6, 207, 268
MalI GATC 5 cut(s) 32, 85, 365, 603, 920
MboI GATC 5 cut(s) 30, 83, 363, 601, 918
MboII GAAGA 5 cut(s) 141, 520, 829, 916, 919
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 3 cut(s) 361, 762, 813
MluCI AATT 3 cut(s) 296, 420, 575
MlyI GAGTC 2 cut(s) 142, 880
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 9 cut(s) 59, 62, 109, 147, 471, 577, 688, 742, 921
MroNI GCCGGC 1 cut(s) 832
MroXI GAANNNNTTC 2 cut(s) 179, 512
MseI TTAA 4 cut(s) 36, 330, 423, 753
MspA1I CMGCKG 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 3 cut(s) 593, 833, 956
MspR9I CCNGG 1 cut(s) 721
Mva1269I GAATGC 2 cut(s) 454, 879
MvaI CCWGG 1 cut(s) 721
MvnI CGCG 1 cut(s) 784
MwoI GCNNNNNNNGC 3 cut(s) 458, 650, 885
NaeI GCCGGC 1 cut(s) 834
NdeII GATC 5 cut(s) 30, 83, 363, 601, 918
NgoMIV GCCGGC 1 cut(s) 832
NlaIII CATG 1 cut(s) 544
NlaIV GGNNCC 2 cut(s) 32, 279
NmuCI GTSAC 2 cut(s) 207, 268
PaeR7I CTCGAG 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 503
PctI GAATGC 2 cut(s) 454, 879
PdiI GCCGGC 1 cut(s) 834
PdmI GAANNNNTTC 2 cut(s) 179, 512
PfeI GAWTC 1 cut(s) 686
PinAI ACCGGT 1 cut(s) 592
PkrI GCNGC 4 cut(s) 122, 192, 672, 783
PleI GAGTC 2 cut(s) 141, 879
PpsI GAGTC 2 cut(s) 141, 879
PshBI ATTAAT 2 cut(s) 330, 423
PsiI TTATAA 1 cut(s) 522
Psp124BI GAGCTC 2 cut(s) 361, 813
Psp6I CCWGG 1 cut(s) 719
PspGI CCWGG 1 cut(s) 719
PspN4I GGNNCC 2 cut(s) 32, 279
PspPI GGNCC 3 cut(s) 237, 858, 930
PstI CTGCAG 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
SacI GAGCTC 2 cut(s) 361, 813
SapI GCTCTTC 1 cut(s) 503
SaqAI TTAA 4 cut(s) 36, 330, 423, 753
SatI GCNGC 4 cut(s) 121, 191, 671, 782
Sau3AI GATC 5 cut(s) 30, 83, 363, 601, 918
Sau96I GGNCC 3 cut(s) 237, 858, 930
SchI GAGTC 2 cut(s) 142, 880
ScrFI CCNGG 1 cut(s) 721
SduI GDGCHC 3 cut(s) 361, 762, 813
SfaNI GCATC 3 cut(s) 87, 236, 601
SfcI CTRYAG 1 cut(s) 264
Sfr274I CTCGAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 930
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 3 cut(s) 140, 605, 752
SmoI CTYRAG 3 cut(s) 140, 605, 752
Sse9I AATT 3 cut(s) 296, 420, 575
SsiI CCGC 2 cut(s) 388, 782
SspMI CTAG 3 cut(s) 566, 885, 982
SstI GAGCTC 2 cut(s) 361, 813
StyD4I CCNGG 1 cut(s) 719
StyI CCWWGG 2 cut(s) 735, 861
TaaI ACNGT 3 cut(s) 116, 207, 473
TaqI TCGA 3 cut(s) 141, 152, 441
TasI AATT 3 cut(s) 296, 420, 575
TauI GCSGC 1 cut(s) 784
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 4 cut(s) 36, 330, 423, 753
Tru9I TTAA 4 cut(s) 36, 330, 423, 753
TseFI GTSAC 2 cut(s) 207, 268
TseI GCWGC 3 cut(s) 120, 190, 670
Tsp45I GTSAC 2 cut(s) 207, 268
TspDTI ATGAA 2 cut(s) 116, 842
TspGWI ACGGA 4 cut(s) 326, 355, 586, 854
Vha464I CTTAAG 1 cut(s) 752
VpaK11BI GGWCC 1 cut(s) 930
VspI ATTAAT 2 cut(s) 330, 423
XapI RAATTY 2 cut(s) 296, 575
XhoI CTCGAG 1 cut(s) 140
XmiI GTMKAC 2 cut(s) 407, 589
XmnI GAANNNNTTC 2 cut(s) 179, 512
XspI CTAG 3 cut(s) 566, 885, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.