Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Reverse (-)

15763287 .. 15766664

Gene Structure 3378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG181900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAGAAACTTGTTTTGGGCAGGATGGCATTGCAAGAAAGCTTAGATAGATTCAAGAAGCAGCAAGAGAAGTGCCAGTCGACCCTGACCAGCATTGCCTCTAAAAAGGCCGCAGCAAACCCCAGAGCTGTTCCCATAGCAGCTGCTAGGGCTCCTACTCCACCTATTAAATTTTCAAATGATACAGAGAGACTCCAACACATTAATAGCATACGGAAAGGCCCAGTTGGAGCTCAGATCAAGCGTGTTATAGACCTGCTTCTAGAGACAAGGCAGGCCTTTACTCCAGAGCTAATTAATGGACAATGTTTTGTTGATGTGAATGCCAACAAAGCTGTCTTTGACAGTCTGAGGAATAACCCAAAAGTTCATTATGATGGGAAGCGCTTTTCTTATAAGTCCAAGCATGCTCTGAAGGACAAAAATCAACTCCGGTCCTTAATACGGAAATTTTCAGAGGGCATACCTGTCATTGATCTGAAGGATTCATACCCAACTGTGATGGAGGATTTGCAGGCTTTGAAAGCTGCGGGTGACATATGGCTACTTTCGAACTTTGATTCACAAGAGGACATTGCTTATCCAAATGACCCCAGGTTGCCTTCTACTAAGGTGGATGATGAGCTTAAACTTTTCTTCAGGGGGATTGAACTGCCTCGTGATATGCTGGACATAGAGAGGGATCTTCAGAAGAATGGTATGAAGCCGGCCACAGACACTGCAAAGAGGAGGGCTGTTGCCCAGAGTCAAGGCATTCAAGCCAAATCCAAGCCCAAGAAGAAGAAGAATGAGATCAGCAAGAGGACCAAGTTGACCAATGCCCATCTTCCAGAGCTTTTCAAGGATTTGAAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

285

Amino Acids

32.19

Weight (kDa)

9.89

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFA2_Winged_2	PF18121	139 - 196	4.7e-17	TFA2 Winged helix domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	2 cut(s)	111, 530
AclWI	GGATC	1 cut(s)	690
AcoI	YGGCCR	1 cut(s)	708
AcsI	RAATTY	2 cut(s)	170, 449
AcuI	CTGAAG	4 cut(s)	434, 500, 622, 671
AfeI	AGCGCT	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	444
AgsI	TTSAA	7 cut(s)	55, 177, 523, 650, 758, 841, 850
AjnI	CCWGG	1 cut(s)	593
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	9 cut(s)	42, 128, 143, 233, 292, 335, 527, 625, 835
AluI	AGCT	9 cut(s)	42, 128, 143, 233, 292, 335, 527, 625, 835
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	184, 260
AlwI	GGATC	1 cut(s)	690
AlwNI	CAGNNNCTG	1 cut(s)	719
Aor51HI	AGCGCT	1 cut(s)	386
AoxI	GGCC	4 cut(s)	108, 220, 276, 708
ApeKI	GCWGC	5 cut(s)	61, 113, 140, 143, 527
ApoI	RAATTY	2 cut(s)	170, 449
AseI	ATTAAT	2 cut(s)	204, 297
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	3 cut(s)	221, 435, 804
AsuHPI	GGTGA	1 cut(s)	545
AsuII	TTCGAA	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	435, 804
BanII	GRGCYC	2 cut(s)	154, 235
BarI	GAAGNNNNNNTAC	2 cut(s)	473, 505
BauI	CACGAG	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	5 cut(s)	73, 125, 130, 152, 514
BccI	CCATC	4 cut(s)	19, 371, 496, 831
BciT130I	CCWGG	1 cut(s)	595
BcoDI	GTCTC	2 cut(s)	184, 260
BfaI	CTAG	3 cut(s)	147, 263, 856
BfoI	RGCGCY	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	264
BisI	GCNGC	6 cut(s)	62, 111, 114, 141, 144, 528
BlsI	GCNGC	6 cut(s)	63, 112, 115, 142, 145, 529
Bme1390I	CCNGG	1 cut(s)	595
Bme18I	GGWCC	2 cut(s)	435, 804
BmgT120I	GGNCC	3 cut(s)	221, 435, 804
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	595
BmrI	ACTGGG	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	593
BsaWI	WCCGGW	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	2 cut(s)	76, 224
Bse3DI	GCAATG	3 cut(s)	29, 93, 573
BseBI	CCWGG	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	593
BseGI	GGATG	2 cut(s)	30, 622
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	3 cut(s)	29, 93, 573
BseMII	CTCAG	2 cut(s)	248, 341
BseNI	ACTGG	2 cut(s)	76, 224
BseRI	GAGGAG	1 cut(s)	742
BseXI	GCAGC	5 cut(s)	73, 125, 130, 152, 514
BshFI	GGCC	4 cut(s)	110, 222, 278, 710
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	433, 707
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	184, 260
BsmI	GAATGC	2 cut(s)	328, 753
BsnI	GGCC	4 cut(s)	110, 222, 278, 710
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	154, 235
Bsp143I	GATC	4 cut(s)	237, 475, 682, 792
BspACI	CCGC	2 cut(s)	111, 530
BspANI	GGCC	4 cut(s)	110, 222, 278, 710
BspCNI	CTCAG	2 cut(s)	247, 342
BspLI	GGNNCC	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	690
BspT104I	TTCGAA	1 cut(s)	551
BsrDI	GCAATG	3 cut(s)	29, 93, 573
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	76, 224
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	1 cut(s)	593
BssMI	GATC	4 cut(s)	237, 475, 682, 792
BssSI	CACGAG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	2 cut(s)	347, 499
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	4 cut(s)	276, 408, 516, 708
BstDEI	CTNAG	4 cut(s)	43, 234, 350, 609
BstF5I	GGATG	2 cut(s)	30, 622
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	4 cut(s)	240, 478, 685, 795
BstMAI	GTCTC	2 cut(s)	184, 260
BstMBI	GATC	4 cut(s)	237, 475, 682, 792
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 332, 524
BstNI	CCWGG	1 cut(s)	595
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	593
BstV1I	GCAGC	5 cut(s)	73, 125, 130, 152, 514
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BsuRI	GGCC	4 cut(s)	110, 222, 278, 710
BtsCI	GGATG	2 cut(s)	30, 622
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	1 cut(s)	717
BveI	ACCTGC	1 cut(s)	264
Cac8I	GCNNGC	4 cut(s)	276, 408, 516, 708
CaiI	CAGNNNCTG	1 cut(s)	719
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	3 cut(s)	221, 435, 804
CviAII	CATG	1 cut(s)	407
DdeI	CTNAG	4 cut(s)	43, 234, 350, 609
DpnI	GATC	4 cut(s)	239, 477, 684, 794
DpnII	GATC	4 cut(s)	237, 475, 682, 792
EaeI	YGGCCR	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	233
Eco147I	AGGCCT	1 cut(s)	278
Eco24I	GRGCYC	2 cut(s)	154, 235
Eco47I	GGWCC	2 cut(s)	435, 804
Eco47III	AGCGCT	1 cut(s)	386
Eco53kI	GAGCTC	1 cut(s)	233
Eco57I	CTGAAG	4 cut(s)	434, 500, 622, 671
EcoICRI	GAGCTC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	593
EcoT38I	GRGCYC	2 cut(s)	154, 235
FaeI	CATG	1 cut(s)	410
FatI	CATG	1 cut(s)	406
FauI	CCCGC	1 cut(s)	523
FauNDI	CATATG	1 cut(s)	539
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	6 cut(s)	62, 111, 114, 141, 144, 528
FokI	GGATG	2 cut(s)	37, 629
FriOI	GRGCYC	2 cut(s)	154, 235
Fsp4HI	GCNGC	6 cut(s)	62, 111, 114, 141, 144, 528
FspBI	CTAG	3 cut(s)	147, 263, 856
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	6 cut(s)	62, 111, 114, 141, 144, 528
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	388
HaeIII	GGCC	4 cut(s)	110, 222, 278, 710
HapII	CCGG	2 cut(s)	433, 707
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	410
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	2 cut(s)	81, 813
HindII	GTYRAC	2 cut(s)	81, 813
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	5 cut(s)	51, 192, 485, 560, 745
HpaII	CCGG	2 cut(s)	433, 707
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	2 cut(s)	81, 813
Hpy188I	TCNGA	6 cut(s)	237, 351, 414, 457, 480, 690
Hpy188III	TCNNGA	5 cut(s)	55, 263, 287, 659, 830
Hpy8I	GTNNAC	2 cut(s)	81, 813
HpyAV	CCTTC	3 cut(s)	409, 475, 612
HpyCH4III	ACNGT	2 cut(s)	347, 499
HpyCH4V	TGCA	3 cut(s)	34, 514, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 332, 524
HpyF3I	CTNAG	4 cut(s)	43, 234, 350, 609
Hsp92II	CATG	1 cut(s)	410
HspAI	GCGC	1 cut(s)	385
KroI	GCCGGC	1 cut(s)	706
KroNI	GCCGGC	1 cut(s)	708
Kzo9I	GATC	4 cut(s)	237, 475, 682, 792
LmnI	GCTCC	2 cut(s)	157, 230
Lsp1109I	GCAGC	5 cut(s)	73, 125, 130, 152, 514
MaeI	CTAG	3 cut(s)	147, 263, 856
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	4 cut(s)	239, 477, 684, 794
MboI	GATC	4 cut(s)	237, 475, 682, 792
MboII	GAAGA	8 cut(s)	16, 628, 677, 703, 790, 793, 796, 818
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	2 cut(s)	154, 235
MluCI	AATT	3 cut(s)	170, 294, 449
MlyI	GAGTC	2 cut(s)	186, 754
MmeI	TCCRAC	2 cut(s)	208, 220
MroNI	GCCGGC	1 cut(s)	706
MseI	TTAA	5 cut(s)	168, 204, 297, 440, 627
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	2 cut(s)	433, 707
MspR9I	CCNGG	1 cut(s)	595
Mva1269I	GAATGC	2 cut(s)	328, 753
MvaI	CCWGG	1 cut(s)	595
MwoI	GCNNNNNNNGC	3 cut(s)	149, 332, 524
NaeI	GCCGGC	1 cut(s)	708
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	4 cut(s)	237, 475, 682, 792
NgoMIV	GCCGGC	1 cut(s)	706
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	551
PaeI	GCATGC	1 cut(s)	410
PceI	AGGCCT	1 cut(s)	278
PctI	GAATGC	2 cut(s)	328, 753
PdiI	GCCGGC	1 cut(s)	708
PfeI	GAWTC	3 cut(s)	51, 485, 560
PkrI	GCNGC	6 cut(s)	63, 112, 115, 142, 145, 529
PleI	GAGTC	2 cut(s)	186, 753
PpsI	GAGTC	2 cut(s)	186, 753
PshBI	ATTAAT	2 cut(s)	204, 297
PsiI	TTATAA	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	593
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	3 cut(s)	221, 435, 804
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	682
PvuII	CAGCTG	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	79
SaqAI	TTAA	5 cut(s)	168, 204, 297, 440, 627
SatI	GCNGC	6 cut(s)	62, 111, 114, 141, 144, 528
Sau3AI	GATC	4 cut(s)	237, 475, 682, 792
Sau96I	GGNCC	3 cut(s)	221, 435, 804
SchI	GAGTC	2 cut(s)	186, 754
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	2 cut(s)	154, 235
SfuI	TTCGAA	1 cut(s)	551
SinI	GGWCC	2 cut(s)	435, 804
SmiMI	CAYNNNNRTG	1 cut(s)	375
SphI	GCATGC	1 cut(s)	410
Sse9I	AATT	3 cut(s)	170, 294, 449
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	2 cut(s)	111, 530
SspMI	CTAG	3 cut(s)	147, 263, 856
SstI	GAGCTC	1 cut(s)	235
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	593
TaaI	ACNGT	2 cut(s)	347, 499
TaqI	TCGA	2 cut(s)	80, 551
TasI	AATT	3 cut(s)	170, 294, 449
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	51, 485, 560
Tru1I	TTAA	5 cut(s)	168, 204, 297, 440, 627
Tru9I	TTAA	5 cut(s)	168, 204, 297, 440, 627
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	5 cut(s)	61, 113, 140, 143, 527
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	4 cut(s)	17, 359, 477, 716
TspGWI	ACGGA	2 cut(s)	229, 460
TspRI	CASTG	1 cut(s)	724
VpaK11BI	GGWCC	2 cut(s)	435, 804
VspI	ATTAAT	2 cut(s)	204, 297
XapI	RAATTY	2 cut(s)	170, 449
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	3 cut(s)	147, 263, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.