Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Reverse (-)

3520991 .. 3524124

Gene Structure 3134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0048900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGGAAGAAGATCAAGAATTCAAGCATTTTTGCAAGTTGTGTAGCAAGAGCTTCCCCTGTGGAAGATCTCTGGGTGGTCACATGAGGTCTCACTTGATCGACAACAATTCGACAGAGGATCAAAAATTCATCAACAGCAGAGTTAAGGTCTCCTCTCTCAGCAATTACACTGAGACAGGTTTCGAAACTGGTCCTCAAGCAGGTTATGGCCTCAGGGAAAACCCCAAGAAAACTTGGAGAATTGCAGGTTCAAGTGAGGAAACTTCAGTTGACAACAAGCTATGCAGAGAATGTGGGAAAGGGTTTCAGTCATGGAAAGCTCTGATCGCTCATATGAAGTGTCACTCAAACTCGACTACTAATAGCTTTGAGAACGAACAAGATTCTTGGACTAGCAGTAAGGCCGTGGACAGCCAATCTGAAAATGAAACTACTAATACTACTAGGAGAAGAACTACCACATCCAGGAGAAGAAGAACAAGGTACATAGCAACAACTACTACAACCTCTTCTTCTAATTTCTCTATTGTAAACAATAATGCTTCTTCATCTGTTACTGAGATTGAGCAAGAGCAACAGGAAGAGGTTGCTTGGTGTTTGATGATGCTCTCAAGAGATGTGGGTCACTGGGGTGGCTTGAAAATTGTTGCTGATCTTGATCACAGTATCTCTGATAACAATTCAGGGTTTTCGGATGCTCCATCATCCCTCAAGATGAATCAGGTTTCCGAAATCAAGGAAGCTACTCTTGAGACTTTTAAACTGAAGAAACTAAAGAAAAAGATGTTAGATCATGAGGAAGTTTCTGTTGGTGGGTTTTCCAAGAGTGACAAAACTAAGAAGAATTTGATACTCAAGAAAACTGAGTTAGCTGAAGCTCAATTGGGTTCTAACAAGTTCAATTCAAGCAACAAGAGAAAGCTTCAAGATACTTATGATCATTCTTCAAAAAGGAGTAAGTATGAGTGTGGTACTTGCAACAAGGTTTTTAGGTCATACCAAGCTCTAGGAGGCCATAGAGCTAGTCACAAAAAGATCAAAGGATGCTTTGCTTCTAAGATTGAGAGCAGTGAACACACCACTGAGTTTGACACAGACCTCTCCCCTGATCATCCCATTGCATCAGATCACAGTAAGCTCAGTAATGTCATTGATCATCAAGATGATGTTGTAAAAGCTGAGAGCATCAGTACAAAGAGTAAGGGGCATTCTTGTCCAATTTGCCTAAAGGTTTTCCCCACTGGTCAAGCATTGGGTGGTCACAAGAGATCACACTTGATTGGTGGTTCAGCTGACAGTAAGAGCAGCCAAAGCACTATAGTGATTCCCAAACCAGCAACTCCTGAAGTTAGAGAGTTTCTTGATCTCAACCTTCCTGCTCCTGTTGAAGAAGAGATTAGTACCAGCCATGCTGCTGCTGCTGCACAATCCTTTAAGCCATGGTGGGTAGGAACCAGCCATAAGCCTTATGAGGCTCTTGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

495

Amino Acids

54.93

Weight (kDa)

8.65

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	95 - 116	9.4e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	321 - 345	1.7e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	403 - 425	2.1e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	191, 236
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	17, 125, 844
AcuI	CTGAAG	4 cut(s)	249, 785, 894, 1365
AfaI	GTAC	4 cut(s)	485, 973, 1192, 1402
AfiI	CCNNNNNNNGG	2 cut(s)	200, 465
AgsI	TTSAA	8 cut(s)	22, 252, 640, 901, 906, 926, 948, 1388
AjnI	CCWGG	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AleI	CACNNNNGTG	2 cut(s)	630, 1319
Alw26I	GTCTC	4 cut(s)	93, 154, 167, 746
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	3 cut(s)	208, 402, 1012
ApeKI	GCWGC	5 cut(s)	1305, 1412, 1415, 1418, 1421
ApoI	RAATTY	3 cut(s)	17, 125, 844
AspS9I	GGNCC	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	212
BbvI	GCAGC	5 cut(s)	1317, 1399, 1402, 1405, 1408
BccI	CCATC	1 cut(s)	709
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	466
BclI	TGATCA	4 cut(s)	658, 937, 1108, 1153
BcoDI	GTCTC	4 cut(s)	93, 154, 167, 746
BfaI	CTAG	4 cut(s)	393, 444, 1007, 1023
BfmI	CTRYAG	1 cut(s)	1317
BfuAI	ACCTGC	2 cut(s)	191, 236
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	5 cut(s)	1306, 1413, 1416, 1419, 1422
BlsI	GCNGC	5 cut(s)	1307, 1414, 1417, 1420, 1423
Bme1390I	CCNGG	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	1453
BmrFI	CCNGG	1 cut(s)	466
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	5 cut(s)	594, 685, 1034, 1130, 1194
BmuI	ACTGGG	1 cut(s)	637
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	5 cut(s)	180, 595, 695, 770, 839
BsaBI	GATNNNNATC	1 cut(s)	657
BsaI	GGTCTC	2 cut(s)	93, 154
BsaJI	CCNNGG	2 cut(s)	405, 1439
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 465
Bse1I	ACTGG	3 cut(s)	193, 632, 1246
Bse21I	CCTNAGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	1116
Bse8I	GATNNNNATC	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	405, 1439
BseGI	GGATG	5 cut(s)	461, 700, 704, 1049, 1111
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	2 cut(s)	200, 465
BseMI	GCAATG	1 cut(s)	1116
BseMII	CTCAG	8 cut(s)	162, 172, 226, 549, 855, 1074, 1153, 1170
BseNI	ACTGG	3 cut(s)	193, 632, 1246
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	5 cut(s)	1317, 1399, 1402, 1405, 1408
BsgI	GTGCAG	1 cut(s)	1407
BshFI	GGCC	3 cut(s)	210, 404, 1014
BslI	CCNNNNNNNGG	2 cut(s)	200, 465
BsmAI	GTCTC	4 cut(s)	93, 154, 167, 746
BsmI	GAATGC	1 cut(s)	1207
BsnI	GGCC	3 cut(s)	210, 404, 1014
Bso31I	GGTCTC	2 cut(s)	93, 154
Bsp119I	TTCGAA	1 cut(s)	183
Bsp19I	CCATGG	1 cut(s)	1439
BspANI	GGCC	3 cut(s)	210, 404, 1014
BspCNI	CTCAG	8 cut(s)	163, 171, 225, 550, 856, 1075, 1152, 1171
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	1 cut(s)	1453
BspMI	ACCTGC	2 cut(s)	191, 236
BspPI	GGATC	1 cut(s)	126
BspT104I	TTCGAA	1 cut(s)	183
BspTNI	GGTCTC	2 cut(s)	93, 154
BsrDI	GCAATG	1 cut(s)	1116
BsrI	ACTGG	3 cut(s)	193, 632, 1246
BssECI	CCNNGG	2 cut(s)	405, 1439
BssT1I	CCWWGG	1 cut(s)	1439
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	3 cut(s)	665, 1133, 1298
Bst6I	CTCTTC	3 cut(s)	514, 576, 1386
BstBI	TTCGAA	1 cut(s)	183
BstDSI	CCRYGG	2 cut(s)	405, 1439
BstENI	CCTNNNNNAGG	1 cut(s)	198
BstF5I	GGATG	5 cut(s)	461, 700, 704, 1049, 1111
BstMAI	GTCTC	4 cut(s)	93, 154, 167, 746
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 1311, 1418, 1421
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	1317
BstV1I	GCAGC	5 cut(s)	1317, 1399, 1402, 1405, 1408
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	3 cut(s)	210, 404, 1014
BtgI	CCRYGG	2 cut(s)	405, 1439
BtsCI	GGATG	5 cut(s)	461, 700, 704, 1049, 1111
BtsI	GCAGTG	1 cut(s)	1075
BtsIMutI	CAGTG	5 cut(s)	168, 625, 1075, 1080, 1239
BveI	ACCTGC	2 cut(s)	191, 236
CciI	TCATGA	1 cut(s)	793
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	4 cut(s)	484, 972, 1191, 1401
CspCI	CAANNNNNGTGG	4 cut(s)	600, 635, 1069, 1104
CviAII	CATG	5 cut(s)	82, 312, 794, 1409, 1440
CviQI	GTAC	4 cut(s)	484, 972, 1191, 1401
DraI	TTTAAA	1 cut(s)	760
Eam1104I	CTCTTC	3 cut(s)	514, 576, 1386
EarI	CTCTTC	3 cut(s)	514, 576, 1386
Eco130I	CCWWGG	1 cut(s)	1439
Eco31I	GGTCTC	2 cut(s)	93, 154
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	4 cut(s)	249, 785, 894, 1365
Eco81I	CCTNAGG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	1439
ErhI	CCWWGG	1 cut(s)	1439
FaeI	CATG	5 cut(s)	85, 315, 797, 1412, 1443
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FatI	CATG	5 cut(s)	81, 311, 793, 1408, 1439
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	4 cut(s)	658, 937, 1108, 1153
Fnu4HI	GCNGC	5 cut(s)	1306, 1413, 1416, 1419, 1422
FokI	GGATG	5 cut(s)	448, 691, 707, 1056, 1098
Fsp4HI	GCNGC	5 cut(s)	1306, 1413, 1416, 1419, 1422
FspBI	CTAG	4 cut(s)	393, 444, 1007, 1023
GluI	GCNGC	5 cut(s)	1306, 1413, 1416, 1419, 1422
HaeIII	GGCC	3 cut(s)	210, 404, 1014
Hin1II	CATG	5 cut(s)	85, 315, 797, 1412, 1443
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	3 cut(s)	383, 718, 1324
Hpy166II	GTNNAC	4 cut(s)	271, 409, 532, 1073
Hpy188I	TCNGA	6 cut(s)	324, 421, 673, 694, 730, 1126
Hpy8I	GTNNAC	4 cut(s)	271, 409, 532, 1073
HpyAV	CCTTC	1 cut(s)	1382
HpyCH4III	ACNGT	3 cut(s)	665, 1133, 1298
HpyCH4V	TGCA	6 cut(s)	33, 245, 285, 978, 1121, 1424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 1311, 1418, 1421
Hsp92II	CATG	5 cut(s)	85, 315, 797, 1412, 1443
Ksp22I	TGATCA	4 cut(s)	658, 937, 1108, 1153
LmnI	GCTCC	2 cut(s)	703, 1384
Lsp1109I	GCAGC	5 cut(s)	1317, 1399, 1402, 1405, 1408
LweI	GCATC	5 cut(s)	594, 685, 1034, 1130, 1194
MaeI	CTAG	4 cut(s)	393, 444, 1007, 1023
MaeIII	GTNAC	7 cut(s)	77, 341, 553, 623, 827, 1025, 1259
MfeI	CAATTG	1 cut(s)	881
MflI	RGATCY	1 cut(s)	65
MseI	TTAA	3 cut(s)	144, 759, 1434
MslI	CAYNNNNRTG	3 cut(s)	630, 1161, 1319
MspA1I	CMGCKG	1 cut(s)	1292
MspR9I	CCNGG	1 cut(s)	466
MunI	CAATTG	1 cut(s)	881
Mva1269I	GAATGC	1 cut(s)	1207
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	4 cut(s)	326, 1311, 1418, 1421
NcoI	CCATGG	1 cut(s)	1439
NdeI	CATATG	1 cut(s)	333
NlaIII	CATG	5 cut(s)	85, 315, 797, 1412, 1443
NlaIV	GGNNCC	1 cut(s)	1453
NmuCI	GTSAC	6 cut(s)	77, 341, 623, 827, 1025, 1259
NspV	TTCGAA	1 cut(s)	183
OliI	CACNNNNGTG	2 cut(s)	630, 1319
PagI	TCATGA	1 cut(s)	793
PctI	GAATGC	1 cut(s)	1207
PfeI	GAWTC	3 cut(s)	383, 718, 1324
PfoI	TCCNGGA	1 cut(s)	464
PkrI	GCNGC	5 cut(s)	1307, 1414, 1417, 1420, 1423
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	1453
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	1292
RsaI	GTAC	4 cut(s)	485, 973, 1192, 1402
RsaNI	GTAC	4 cut(s)	484, 972, 1191, 1401
RseI	CAYNNNNRTG	3 cut(s)	630, 1161, 1319
SaqAI	TTAA	3 cut(s)	144, 759, 1434
SatI	GCNGC	5 cut(s)	1306, 1413, 1416, 1419, 1422
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	466
SfaNI	GCATC	5 cut(s)	594, 685, 1034, 1130, 1194
SfcI	CTRYAG	1 cut(s)	1317
SfuI	TTCGAA	1 cut(s)	183
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	3 cut(s)	630, 1161, 1319
SmlI	CTYRAG	5 cut(s)	195, 610, 710, 749, 854
SmoI	CTYRAG	5 cut(s)	195, 610, 710, 749, 854
SspMI	CTAG	4 cut(s)	393, 444, 1007, 1023
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	1439
TaaI	ACNGT	3 cut(s)	665, 1133, 1298
TaqI	TCGA	4 cut(s)	99, 110, 183, 353
TatI	WGTACW	1 cut(s)	1190
TfiI	GAWTC	3 cut(s)	383, 718, 1324
Tru1I	TTAA	3 cut(s)	144, 759, 1434
Tru9I	TTAA	3 cut(s)	144, 759, 1434
TscAI	CASTG	5 cut(s)	175, 632, 1075, 1087, 1246
TseFI	GTSAC	6 cut(s)	77, 341, 623, 827, 1025, 1259
TseI	GCWGC	5 cut(s)	1305, 1412, 1415, 1418, 1421
Tsp45I	GTSAC	6 cut(s)	77, 341, 623, 827, 1025, 1259
TspDTI	ATGAA	6 cut(s)	118, 350, 441, 537, 731, 1473
TspRI	CASTG	5 cut(s)	175, 632, 1075, 1087, 1246
VpaK11BI	GGWCC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	198
XapI	RAATTY	3 cut(s)	17, 125, 844
XspI	CTAG	4 cut(s)	393, 444, 1007, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.