Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Forward (+)

11712979 .. 11716191

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGTTGAAAGAGAGTTTAAATAGGTTCAAGAAGCAGCAAGAAAGCGCACAGTCACTTCTTATTGGCATTGCATCTGATAGGGCCACAGCAACGCCAAGACCTGCGCCTGCGGTCACTAAGGCTCCTGCTCCAGCTGTCAAATTTTCAAATGATACTGAGAGGCTTCAACATATTAATACCATACGGAAAGCCCCTGTTGGAGCTCAGATCAAGCGTGTTATAGACCTGCTGCGGGAGACAAGGCTTTCGTACACACCAGATCAAATTAATCAAGAATGTTATGTTGATGTGAATGCTAACAAAGCTGTCTTTGACAGCCTGAGGAATAATCTAAAAGTTTCTTATGATGGGAAGAGCTTCTCTTATAAGTCAAAACATCGTATCACAGACAAAAAACAGTTGCTGTCCTTAATACGGAAATTTTCAGAGGGTATACCGGTCATTGATCTCAAGGATGCTTACCCAAATGTGATGGACGATTTACAGGCTTTGAAAGCTTCAGGTGACATCTGGCTGCTTTCAAACTTTGATTCACAAGAGGACATAGCATATCCAAATGACCCCAGGTTGCCTGCTTCCAAAGTTGATGATGACCTTAAGGTGCTTTTTCGGGGGATTGAATTGCCTCGTGATATGATTGACATTGAGAAAGAGCTCCAGAAGAATGGGATGAAGCCGGCTACGGATACTGCAAAAAGAAGGGCCCTGGCACAGAGTCAAGGCATTCCTAGCAAAACCAAACCCAAGAAGAAGAAGCACGAGATCACCAAGAGAACCAAGCTTACAAACGCCCATCTGCCGGAGCTTTTCCAGAACCTAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

277

Amino Acids

31.17

Weight (kDa)

9.75

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
Acc36I	ACCTGC	2 cut(s)	112, 237
AccI	GTMKAC	1 cut(s)	436
AciI	CCGC	2 cut(s)	113, 235
AcsI	RAATTY	2 cut(s)	143, 422
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	3 cut(s)	235, 417, 802
AflII	CTTAAG	1 cut(s)	599
AgeI	ACCGGT	1 cut(s)	439
AgsI	TTSAA	7 cut(s)	10, 31, 150, 170, 496, 525, 623
AjnI	CCWGG	2 cut(s)	566, 708
AluBI	AGCT	8 cut(s)	137, 206, 308, 360, 500, 658, 784, 808
AluI	AGCT	8 cut(s)	137, 206, 308, 360, 500, 658, 784, 808
Alw21I	GWGCWC	2 cut(s)	208, 660
Alw26I	GTCTC	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	406
AoxI	GGCC	2 cut(s)	84, 705
ApaI	GGGCCC	1 cut(s)	709
ApeKI	GCWGC	3 cut(s)	37, 232, 517
ApoI	RAATTY	2 cut(s)	143, 422
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AseI	ATTAAT	2 cut(s)	177, 270
AsiGI	ACCGGT	1 cut(s)	439
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	2 cut(s)	50, 109
AspS9I	GGNCC	3 cut(s)	84, 705, 706
AsuHPI	GGTGA	2 cut(s)	518, 760
AxyI	CCTNAGG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	709
BanII	GRGCYC	3 cut(s)	208, 660, 709
BauI	CACGAG	2 cut(s)	630, 761
Bbv12I	GWGCWC	2 cut(s)	208, 660
BbvI	GCAGC	3 cut(s)	49, 219, 504
BccI	CCATC	3 cut(s)	344, 469, 804
BciT130I	CCWGG	2 cut(s)	568, 710
BciVI	GTATCC	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	732
BfrI	CTTAAG	1 cut(s)	599
BfuAI	ACCTGC	2 cut(s)	112, 237
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	3 cut(s)	38, 233, 518
BlsI	GCNGC	3 cut(s)	39, 234, 519
Bme1390I	CCNGG	2 cut(s)	568, 710
BmgT120I	GGNCC	3 cut(s)	84, 705, 706
BmiI	GGNNCC	2 cut(s)	126, 707
BmrFI	CCNGG	2 cut(s)	568, 710
BmsI	GCATC	2 cut(s)	83, 448
BpmI	CTGGAG	2 cut(s)	117, 644
BpuEI	CTTGAG	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	566, 708
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 417, 802
Bse118I	RCCGGY	2 cut(s)	439, 679
Bse21I	CCTNAGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	568, 710
BseDI	CCNNGG	2 cut(s)	566, 708
BseGI	GGATG	2 cut(s)	463, 678
BseLI	CCNNNNNNNGG	3 cut(s)	235, 417, 802
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	150, 221, 314
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	3 cut(s)	49, 219, 504
BshFI	GGCC	2 cut(s)	86, 707
BshTI	ACCGGT	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	208, 660
BsiSI	CCGG	3 cut(s)	440, 680, 803
BslI	CCNNNNNNNGG	3 cut(s)	235, 417, 802
BsmAI	GTCTC	1 cut(s)	233
BsmI	GAATGC	2 cut(s)	301, 726
BsnI	GGCC	2 cut(s)	86, 707
Bsp120I	GGGCCC	1 cut(s)	705
Bsp1286I	GDGCHC	3 cut(s)	208, 660, 709
Bsp143I	GATC	4 cut(s)	210, 262, 448, 765
BspACI	CCGC	2 cut(s)	113, 235
BspANI	GGCC	2 cut(s)	86, 707
BspCNI	CTCAG	3 cut(s)	151, 220, 315
BspLI	GGNNCC	2 cut(s)	126, 707
BspMI	ACCTGC	2 cut(s)	112, 237
BspQI	GCTCTTC	1 cut(s)	350
BspTI	CTTAAG	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	2 cut(s)	439, 679
BssAI	RCCGGY	2 cut(s)	439, 679
BssECI	CCNNGG	2 cut(s)	566, 708
BssMI	GATC	4 cut(s)	210, 262, 448, 765
BssNAI	GTATAC	1 cut(s)	437
BssSI	CACGAG	2 cut(s)	630, 761
Bst1107I	GTATAC	1 cut(s)	437
Bst2BI	CACGAG	2 cut(s)	630, 761
Bst2UI	CCWGG	2 cut(s)	568, 710
Bst4CI	ACNGT	2 cut(s)	54, 402
Bst6I	CTCTTC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	111, 576, 681
BstDEI	CTNAG	4 cut(s)	120, 159, 207, 323
BstF5I	GGATG	2 cut(s)	463, 678
BstHHI	GCGC	2 cut(s)	50, 109
BstKTI	GATC	4 cut(s)	213, 265, 451, 768
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	4 cut(s)	210, 262, 448, 765
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 497, 732
BstNI	CCWGG	2 cut(s)	568, 710
BstSCI	CCNGG	2 cut(s)	566, 708
BstSLI	GKGCMC	1 cut(s)	709
BstV1I	GCAGC	3 cut(s)	49, 219, 504
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstZ17I	GTATAC	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	323
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	2 cut(s)	86, 707
BtsCI	GGATG	2 cut(s)	463, 678
BveI	ACCTGC	2 cut(s)	112, 237
Cac8I	GCNNGC	3 cut(s)	111, 576, 681
CaiI	CAGNNNCTG	1 cut(s)	406
CfoI	GCGC	2 cut(s)	50, 109
Cfr10I	RCCGGY	2 cut(s)	439, 679
Cfr13I	GGNCC	3 cut(s)	84, 705, 706
Csp6I	GTAC	1 cut(s)	253
CspAI	ACCGGT	1 cut(s)	439
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	4 cut(s)	120, 159, 207, 323
DpnI	GATC	4 cut(s)	212, 264, 450, 767
DpnII	GATC	4 cut(s)	210, 262, 448, 765
DraI	TTTAAA	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Ecl136II	GAGCTC	2 cut(s)	206, 658
Eco24I	GRGCYC	3 cut(s)	208, 660, 709
Eco53kI	GAGCTC	2 cut(s)	206, 658
Eco57I	CTGAAG	1 cut(s)	486
Eco81I	CCTNAGG	1 cut(s)	323
EcoICRI	GAGCTC	2 cut(s)	206, 658
EcoO109I	RGGNCCY	2 cut(s)	705, 706
EcoRII	CCWGG	2 cut(s)	566, 708
EcoT38I	GRGCYC	3 cut(s)	208, 660, 709
FauI	CCCGC	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	38, 233, 518
FokI	GGATG	2 cut(s)	470, 685
FriOI	GRGCYC	3 cut(s)	208, 660, 709
Fsp4HI	GCNGC	3 cut(s)	38, 233, 518
FspBI	CTAG	1 cut(s)	732
GlaI	GCGC	2 cut(s)	49, 108
GluI	GCNGC	3 cut(s)	38, 233, 518
GsuI	CTGGAG	2 cut(s)	117, 644
HaeIII	GGCC	2 cut(s)	86, 707
HapII	CCGG	3 cut(s)	440, 680, 803
HhaI	GCGC	2 cut(s)	50, 109
Hin6I	GCGC	2 cut(s)	48, 107
HinP1I	GCGC	2 cut(s)	48, 107
HindIII	AAGCTT	2 cut(s)	498, 782
HinfI	GANTC	2 cut(s)	533, 718
HpaII	CCGG	3 cut(s)	440, 680, 803
HphI	GGTGA	2 cut(s)	518, 760
Hpy166II	GTNNAC	2 cut(s)	255, 437
Hpy188I	TCNGA	3 cut(s)	79, 210, 430
Hpy188III	TCNNGA	5 cut(s)	31, 275, 632, 661, 814
Hpy8I	GTNNAC	2 cut(s)	255, 437
HpyAV	CCTTC	1 cut(s)	696
HpyCH4III	ACNGT	2 cut(s)	54, 402
HpyCH4V	TGCA	2 cut(s)	74, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 497, 732
HpyF3I	CTNAG	4 cut(s)	120, 159, 207, 323
HspAI	GCGC	2 cut(s)	48, 107
KroI	GCCGGC	1 cut(s)	679
KroNI	GCCGGC	1 cut(s)	681
Kzo9I	GATC	4 cut(s)	210, 262, 448, 765
LguI	GCTCTTC	1 cut(s)	350
LmnI	GCTCC	5 cut(s)	130, 136, 203, 663, 805
Lsp1109I	GCAGC	3 cut(s)	49, 219, 504
LweI	GCATC	2 cut(s)	83, 448
MaeI	CTAG	1 cut(s)	732
MaeIII	GTNAC	3 cut(s)	54, 115, 506
MalI	GATC	4 cut(s)	212, 264, 450, 767
MboI	GATC	4 cut(s)	210, 262, 448, 765
MboII	GAAGA	4 cut(s)	367, 676, 763, 766
MhlI	GDGCHC	3 cut(s)	208, 660, 709
MluCI	AATT	4 cut(s)	143, 267, 422, 623
MlyI	GAGTC	1 cut(s)	727
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	156, 318, 424, 535, 639
MroNI	GCCGGC	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	5 cut(s)	20, 177, 270, 413, 600
MspA1I	CMGCKG	1 cut(s)	137
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	3 cut(s)	440, 680, 803
MspR9I	CCNGG	2 cut(s)	568, 710
Mva1269I	GAATGC	2 cut(s)	301, 726
MvaI	CCWGG	2 cut(s)	568, 710
MwoI	GCNNNNNNNGC	3 cut(s)	305, 497, 732
NaeI	GCCGGC	1 cut(s)	681
NdeII	GATC	4 cut(s)	210, 262, 448, 765
NgoMIV	GCCGGC	1 cut(s)	679
NlaIV	GGNNCC	2 cut(s)	126, 707
NmuCI	GTSAC	3 cut(s)	54, 115, 506
PciSI	GCTCTTC	1 cut(s)	350
PctI	GAATGC	2 cut(s)	301, 726
PdiI	GCCGGC	1 cut(s)	681
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	533
PinAI	ACCGGT	1 cut(s)	439
PkrI	GCNGC	3 cut(s)	39, 234, 519
PleI	GAGTC	1 cut(s)	726
PpsI	GAGTC	1 cut(s)	726
PshBI	ATTAAT	2 cut(s)	177, 270
PsiI	TTATAA	1 cut(s)	369
Psp124BI	GAGCTC	2 cut(s)	208, 660
Psp6I	CCWGG	2 cut(s)	566, 708
PspGI	CCWGG	2 cut(s)	566, 708
PspN4I	GGNNCC	2 cut(s)	126, 707
PspOMI	GGGCCC	1 cut(s)	705
PspPI	GGNCC	3 cut(s)	84, 705, 706
PsrI	GAACNNNNNNTAC	2 cut(s)	769, 801
PstNI	CAGNNNCTG	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SacI	GAGCTC	2 cut(s)	208, 660
SapI	GCTCTTC	1 cut(s)	350
SaqAI	TTAA	5 cut(s)	20, 177, 270, 413, 600
SatI	GCNGC	3 cut(s)	38, 233, 518
Sau3AI	GATC	4 cut(s)	210, 262, 448, 765
Sau96I	GGNCC	3 cut(s)	84, 705, 706
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	2 cut(s)	568, 710
SduI	GDGCHC	3 cut(s)	208, 660, 709
SfaNI	GCATC	2 cut(s)	83, 448
SmlI	CTYRAG	2 cut(s)	452, 599
SmoI	CTYRAG	2 cut(s)	452, 599
Sse9I	AATT	4 cut(s)	143, 267, 422, 623
SsiI	CCGC	2 cut(s)	113, 235
SspMI	CTAG	1 cut(s)	732
SstI	GAGCTC	2 cut(s)	208, 660
StyD4I	CCNGG	2 cut(s)	566, 708
TaaI	ACNGT	2 cut(s)	54, 402
TasI	AATT	4 cut(s)	143, 267, 422, 623
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	5 cut(s)	20, 177, 270, 413, 600
Tru9I	TTAA	5 cut(s)	20, 177, 270, 413, 600
TseFI	GTSAC	3 cut(s)	54, 115, 506
TseI	GCWGC	3 cut(s)	37, 232, 517
Tsp45I	GTSAC	3 cut(s)	54, 115, 506
TspDTI	ATGAA	1 cut(s)	689
TspGWI	ACGGA	3 cut(s)	202, 433, 701
Vha464I	CTTAAG	1 cut(s)	599
VspI	ATTAAT	2 cut(s)	177, 270
XapI	RAATTY	2 cut(s)	143, 422
XmiI	GTMKAC	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.