Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Reverse (-)

40565956 .. 40566835

Gene Structure 880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0334900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGCAGGCATGCAGAGGTGATTGATGGAGTCCGGCGGGCTGCTGAGAGTGTGGGGTTGTTCCAGGTGGTGAACCATGGGATACCTAAGAAAGTATTAGAGGAGATGCTGCAGGCCATACGTGGGTTTCATGAGCTCCCCAAGGAAGTGAAAGCTGAGTATTATAGTACGGACCACAAGAGGAAGGCCAGGTTTGTTGGTAGCTATAATTTGGGTATATCAAGTTCTCTACAATGGAGGGACTCTTTCATTTGTGACATGAGTTCTGAGCCTGTGAATCCTCATGATTTGCCTGAGGTTTGCAGAGACAAAACCATGGAGTACTCTAAATATGGTCACAAATTAGGTGTCACCTTGTTTGAGTTGCTATCAGAGGGACTTGGGCTGAAACCTGACCACCTTATAGGCTTGGACTGTGCAAAGGGACATCTTATTGCTGACAATGTCAACGCACTCCAGCTTTTGTATCAAAACCAGTGGATTGATGTCCTTCCTATGCCCGGCGCTATCGTGGTGAATATTGGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

176

Amino Acids

19.73

Weight (kDa)

6.05

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 90	1.3e-16	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	37
AfaI	GTAC	2 cut(s)	169, 323
AfiI	CCNNNNNNNGG	2 cut(s)	123, 500
AjnI	CCWGG	2 cut(s)	63, 188
AluBI	AGCT	4 cut(s)	136, 155, 204, 460
AluI	AGCT	4 cut(s)	136, 155, 204, 460
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	300
AoxI	GGCC	2 cut(s)	114, 186
ApeKI	GCWGC	2 cut(s)	41, 109
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	4 cut(s)	31, 82, 343, 526
AvaII	GGWCC	1 cut(s)	172
AxyI	CCTNAGG	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	28, 96
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	2 cut(s)	65, 190
BciVI	GTATCC	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	507
BfuI	GTATCC	1 cut(s)	75
BisI	GCNGC	2 cut(s)	42, 110
BlsI	GCNGC	2 cut(s)	43, 111
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	3 cut(s)	65, 190, 501
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmrFI	CCNGG	3 cut(s)	65, 190, 501
BmsI	GCATC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	501
BsaAI	YACGTR	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	76, 141, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 500
Bse1I	ACTGG	1 cut(s)	475
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	65, 190
BseDI	CCNNGG	3 cut(s)	76, 141, 315
BseLI	CCNNNNNNNGG	2 cut(s)	123, 500
BseMII	CTCAG	4 cut(s)	36, 147, 258, 285
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	28, 96
BshFI	GGCC	2 cut(s)	116, 188
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	34, 501
BslFI	GGGAC	3 cut(s)	254, 390, 438
BslI	CCNNNNNNNGG	2 cut(s)	123, 500
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	3 cut(s)	254, 390, 438
BsnI	GGCC	2 cut(s)	116, 188
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp19I	CCATGG	2 cut(s)	76, 315
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	116, 188
BspCNI	CTCAG	4 cut(s)	37, 148, 259, 286
BspHI	TCATGA	2 cut(s)	130, 283
BspMAI	CTGCAG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	3 cut(s)	76, 141, 315
BssT1I	CCWWGG	3 cut(s)	76, 141, 315
Bst2UI	CCWGG	2 cut(s)	65, 190
Bst4CI	ACNGT	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	4 cut(s)	8, 12, 39, 114
BstDEI	CTNAG	5 cut(s)	45, 87, 156, 267, 294
BstDSI	CCRYGG	2 cut(s)	76, 315
BstH2I	RGCGCY	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	506
BstMAI	GTCTC	1 cut(s)	300
BstNI	CCWGG	2 cut(s)	65, 190
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	3 cut(s)	63, 188, 499
BstSFI	CTRYAG	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	28, 96
Bsu36I	CCTNAGG	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	116, 188
BtgI	CCRYGG	2 cut(s)	76, 315
BtsIMutI	CAGTG	1 cut(s)	482
Cac8I	GCNNGC	4 cut(s)	8, 12, 39, 114
CciI	TCATGA	2 cut(s)	130, 283
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	168, 322
CspCI	CAANNNNNGTGG	2 cut(s)	458, 493
CviAII	CATG	6 cut(s)	11, 77, 131, 259, 284, 316
CviQI	GTAC	2 cut(s)	168, 322
DdeI	CTNAG	5 cut(s)	45, 87, 156, 267, 294
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	3 cut(s)	76, 141, 315
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	136
Eco81I	CCTNAGG	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	63, 188
EcoT14I	CCWWGG	3 cut(s)	76, 141, 315
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	3 cut(s)	76, 141, 315
FaeI	CATG	6 cut(s)	14, 80, 134, 262, 287, 319
FaqI	GGGAC	3 cut(s)	254, 390, 438
FatI	CATG	6 cut(s)	10, 76, 130, 258, 283, 315
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	42, 110
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	42, 110
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	2 cut(s)	42, 110
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	116, 188
HapII	CCGG	2 cut(s)	34, 501
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	6 cut(s)	14, 80, 134, 262, 287, 319
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	30, 242, 277
HpaII	CCGG	2 cut(s)	34, 501
HphI	GGTGA	4 cut(s)	31, 82, 343, 526
Hpy166II	GTNNAC	2 cut(s)	73, 448
Hpy188I	TCNGA	2 cut(s)	268, 373
Hpy188III	TCNNGA	2 cut(s)	131, 284
Hpy8I	GTNNAC	2 cut(s)	73, 448
HpyAV	CCTTC	2 cut(s)	178, 500
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	14, 112, 303, 419
HpyF3I	CTNAG	5 cut(s)	45, 87, 156, 267, 294
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	6 cut(s)	14, 80, 134, 262, 287, 319
HspAI	GCGC	1 cut(s)	504
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	2 cut(s)	28, 96
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	3 cut(s)	254, 335, 349
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	208, 341
MlyI	GAGTC	2 cut(s)	39, 236
MnlI	CCTC	7 cut(s)	10, 94, 174, 231, 289, 291, 367
MspI	CCGG	2 cut(s)	34, 501
MspR9I	CCNGG	3 cut(s)	65, 190, 501
MvaI	CCWGG	2 cut(s)	65, 190
NciI	CCSGG	1 cut(s)	501
NcoI	CCATGG	2 cut(s)	76, 315
NlaIII	CATG	6 cut(s)	14, 80, 134, 262, 287, 319
NmuCI	GTSAC	3 cut(s)	254, 335, 349
NspI	RCATGY	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	14
PagI	TCATGA	2 cut(s)	130, 283
PfeI	GAWTC	1 cut(s)	277
PflFI	GACNNNGTC	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	43, 111
PleI	GAGTC	2 cut(s)	38, 236
PpsI	GAGTC	2 cut(s)	38, 236
Ppu21I	YACGTR	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	63, 188
PspGI	CCWGG	2 cut(s)	63, 188
PspPI	GGNCC	1 cut(s)	172
PsrI	GAACNNNNNNTAC	2 cut(s)	208, 240
PstI	CTGCAG	1 cut(s)	114
PsyI	GACNNNGTC	1 cut(s)	443
RsaI	GTAC	2 cut(s)	169, 323
RsaNI	GTAC	2 cut(s)	168, 322
SacI	GAGCTC	1 cut(s)	138
SatI	GCNGC	2 cut(s)	42, 110
Sau96I	GGNCC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	2 cut(s)	39, 236
ScrFI	CCNGG	3 cut(s)	65, 190, 501
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	172
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	2 cut(s)	208, 341
SsiI	CCGC	1 cut(s)	37
SspI	AATATT	1 cut(s)	520
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	3 cut(s)	63, 188, 499
StyI	CCWWGG	3 cut(s)	76, 141, 315
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	1 cut(s)	124
TasI	AATT	2 cut(s)	208, 341
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	277
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	3 cut(s)	254, 335, 349
TseI	GCWGC	2 cut(s)	41, 109
Tsp45I	GTSAC	3 cut(s)	254, 335, 349
TspDTI	ATGAA	2 cut(s)	119, 238
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	482
Tth111I	GACNNNGTC	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	172
XceI	RCATGY	1 cut(s)	14
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.