Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Reverse (-)

14960770 .. 14965003

Gene Structure 4234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG172500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCTTGTTTTGGGCAGGATGGCATTGCAAGAAAGCTTAGATAGATTCAAGAAGCAGCAAGAGAAGTGCCAGTCGACCCTGACTAGCATTGCCTCTAAAAAGGCCGCAGCAAACCCCAGAGCTGTTCCCATAGCAGCTGCTAGGGCTCCTGCTCCACCTATTAAATTTTCAAATGATACGGAGAGACTCCAACACATTAATAGCATACGTAAAGGCCCAGTTGGAGCTCAGATCAAGCGTGTTATAGACCTGCTTCTAGAGACAAGGCAGGCCTTTACTCCAGAGCTAATTAATGAACAATGTTTTGTTGATGTGAATGCCAACAAAGCTGTCTTTGACAGTCTGAGGAATAACCCCAAAGTTCATTATGATGGGAAGCGCTTTTCTTATAAGTCCAAGCATGCTCTGAAGGACAAAAATCAACTCCGGTCCTTAATACGGAAATTTTCAGAGGGCATACCTGTCATTGATCTGAAGGATTCATACCCAACTGTGATGGAGGATTTGCAGGCTTTGAAAGCTGCGGGTGACATATGGCTACTTTCGAACTTTGATTCACAAGAGGACATTGCTTATCCAAATGACCCCAGGTTGCCTTCTACTAAGGTGGATGATGAGCTTAAACTTTTCTTCAGGGGGATTGAACTGCCTCGTGATATGCTGGACATAGAGAGGGATCTTCAGAAGAATGGTATGAAGCCAGCCACAGACACTGCAAAGAGGAGGGCTGTTGCCCAGAGTCAAGGCATTCAAGCCAAATCCAAGCCTAAGAAGAAGAAGAATGAGATCAGCAAGAGGACCAAGTTGACCAATGCCCATCTTCCAGAGCTTTTCAAGGATTTGAAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

283

Amino Acids

31.97

Weight (kDa)

9.79

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFA2_Winged_2	PF18121	137 - 194	4.7e-17	TFA2 Winged helix domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	74
AciI	CCGC	2 cut(s)	105, 524
AclWI	GGATC	1 cut(s)	684
AcsI	RAATTY	2 cut(s)	164, 443
AcuI	CTGAAG	4 cut(s)	428, 494, 616, 665
AfeI	AGCGCT	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	438
AgsI	TTSAA	7 cut(s)	49, 171, 517, 644, 752, 835, 844
AjnI	CCWGG	1 cut(s)	587
AluBI	AGCT	9 cut(s)	36, 122, 137, 227, 286, 329, 521, 619, 829
AluI	AGCT	9 cut(s)	36, 122, 137, 227, 286, 329, 521, 619, 829
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	178, 254
AlwI	GGATC	1 cut(s)	684
AlwNI	CAGNNNCTG	1 cut(s)	713
Aor51HI	AGCGCT	1 cut(s)	380
AoxI	GGCC	3 cut(s)	102, 214, 270
ApeKI	GCWGC	5 cut(s)	55, 107, 134, 137, 521
ApoI	RAATTY	2 cut(s)	164, 443
AseI	ATTAAT	2 cut(s)	198, 291
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	3 cut(s)	215, 429, 798
AsuHPI	GGTGA	1 cut(s)	539
AsuII	TTCGAA	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	429, 798
BanII	GRGCYC	2 cut(s)	148, 229
BarI	GAAGNNNNNNTAC	2 cut(s)	467, 499
BauI	CACGAG	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	5 cut(s)	67, 119, 124, 146, 508
BccI	CCATC	4 cut(s)	13, 365, 490, 825
BciT130I	CCWGG	1 cut(s)	589
BcoDI	GTCTC	2 cut(s)	178, 254
BfaI	CTAG	4 cut(s)	84, 141, 257, 850
BfoI	RGCGCY	1 cut(s)	382
BfuAI	ACCTGC	1 cut(s)	258
BisI	GCNGC	6 cut(s)	56, 105, 108, 135, 138, 522
BlsI	GCNGC	6 cut(s)	57, 106, 109, 136, 139, 523
Bme1390I	CCNGG	1 cut(s)	589
Bme18I	GGWCC	2 cut(s)	429, 798
BmgT120I	GGNCC	3 cut(s)	215, 429, 798
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	589
BmrI	ACTGGG	1 cut(s)	212
BmuI	ACTGGG	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	545
BsaAI	YACGTR	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	587
BsaWI	WCCGGW	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse1I	ACTGG	2 cut(s)	70, 218
Bse3DI	GCAATG	3 cut(s)	23, 87, 567
BseBI	CCWGG	1 cut(s)	589
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	2 cut(s)	24, 616
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMI	GCAATG	3 cut(s)	23, 87, 567
BseMII	CTCAG	2 cut(s)	242, 335
BseNI	ACTGG	2 cut(s)	70, 218
BseRI	GAGGAG	1 cut(s)	736
BseXI	GCAGC	5 cut(s)	67, 119, 124, 146, 508
BshFI	GGCC	3 cut(s)	104, 216, 272
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	2 cut(s)	178, 254
BsmI	GAATGC	2 cut(s)	322, 747
BsnI	GGCC	3 cut(s)	104, 216, 272
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	2 cut(s)	148, 229
Bsp143I	GATC	4 cut(s)	231, 469, 676, 786
BspACI	CCGC	2 cut(s)	105, 524
BspANI	GGCC	3 cut(s)	104, 216, 272
BspCNI	CTCAG	2 cut(s)	241, 336
BspLI	GGNNCC	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	545
BsrDI	GCAATG	3 cut(s)	23, 87, 567
BsrI	ACTGG	2 cut(s)	70, 218
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	4 cut(s)	231, 469, 676, 786
BssSI	CACGAG	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	589
Bst4CI	ACNGT	2 cut(s)	341, 493
BstBAI	YACGTR	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	4 cut(s)	270, 402, 510, 702
BstDEI	CTNAG	5 cut(s)	37, 228, 344, 603, 768
BstF5I	GGATG	2 cut(s)	24, 616
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	4 cut(s)	234, 472, 679, 789
BstMAI	GTCTC	2 cut(s)	178, 254
BstMBI	GATC	4 cut(s)	231, 469, 676, 786
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 326, 518
BstNI	CCWGG	1 cut(s)	589
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	587
BstSNI	TACGTA	1 cut(s)	209
BstV1I	GCAGC	5 cut(s)	67, 119, 124, 146, 508
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	3 cut(s)	104, 216, 272
BtsCI	GGATG	2 cut(s)	24, 616
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	1 cut(s)	711
BveI	ACCTGC	1 cut(s)	258
Cac8I	GCNNGC	4 cut(s)	270, 402, 510, 702
CaiI	CAGNNNCTG	1 cut(s)	713
CfoI	GCGC	1 cut(s)	381
Cfr13I	GGNCC	3 cut(s)	215, 429, 798
CviAII	CATG	1 cut(s)	401
DdeI	CTNAG	5 cut(s)	37, 228, 344, 603, 768
DpnI	GATC	4 cut(s)	233, 471, 678, 788
DpnII	GATC	4 cut(s)	231, 469, 676, 786
Ecl136II	GAGCTC	1 cut(s)	227
Eco105I	TACGTA	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	2 cut(s)	148, 229
Eco47I	GGWCC	2 cut(s)	429, 798
Eco47III	AGCGCT	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	4 cut(s)	428, 494, 616, 665
EcoICRI	GAGCTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	587
EcoT38I	GRGCYC	2 cut(s)	148, 229
FaeI	CATG	1 cut(s)	404
FatI	CATG	1 cut(s)	400
FauI	CCCGC	1 cut(s)	517
FauNDI	CATATG	1 cut(s)	533
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	6 cut(s)	56, 105, 108, 135, 138, 522
FokI	GGATG	2 cut(s)	31, 623
FriOI	GRGCYC	2 cut(s)	148, 229
Fsp4HI	GCNGC	6 cut(s)	56, 105, 108, 135, 138, 522
FspBI	CTAG	4 cut(s)	84, 141, 257, 850
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	6 cut(s)	56, 105, 108, 135, 138, 522
GsuI	CTGGAG	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	382
HaeIII	GGCC	3 cut(s)	104, 216, 272
HapII	CCGG	1 cut(s)	427
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	2 cut(s)	75, 807
HindII	GTYRAC	2 cut(s)	75, 807
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	5 cut(s)	45, 186, 479, 554, 739
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	2 cut(s)	75, 807
Hpy188I	TCNGA	6 cut(s)	231, 345, 408, 451, 474, 684
Hpy188III	TCNNGA	5 cut(s)	49, 257, 281, 653, 824
Hpy8I	GTNNAC	2 cut(s)	75, 807
HpyAV	CCTTC	3 cut(s)	403, 469, 606
HpyCH4III	ACNGT	2 cut(s)	341, 493
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	28, 508, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 326, 518
HpyF3I	CTNAG	5 cut(s)	37, 228, 344, 603, 768
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	231, 469, 676, 786
LmnI	GCTCC	3 cut(s)	151, 157, 224
Lsp1109I	GCAGC	5 cut(s)	67, 119, 124, 146, 508
MaeI	CTAG	4 cut(s)	84, 141, 257, 850
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	4 cut(s)	233, 471, 678, 788
MboI	GATC	4 cut(s)	231, 469, 676, 786
MboII	GAAGA	7 cut(s)	622, 671, 697, 784, 787, 790, 812
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	2 cut(s)	148, 229
MluCI	AATT	3 cut(s)	164, 288, 443
MlyI	GAGTC	2 cut(s)	180, 748
MmeI	TCCRAC	2 cut(s)	202, 214
MseI	TTAA	5 cut(s)	162, 198, 291, 434, 621
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	1 cut(s)	427
MspR9I	CCNGG	1 cut(s)	589
Mva1269I	GAATGC	2 cut(s)	322, 747
MvaI	CCWGG	1 cut(s)	589
MwoI	GCNNNNNNNGC	3 cut(s)	143, 326, 518
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	4 cut(s)	231, 469, 676, 786
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	527
NspI	RCATGY	1 cut(s)	404
NspV	TTCGAA	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	272
PctI	GAATGC	2 cut(s)	322, 747
PfeI	GAWTC	3 cut(s)	45, 479, 554
PkrI	GCNGC	6 cut(s)	57, 106, 109, 136, 139, 523
PleI	GAGTC	2 cut(s)	180, 747
PpsI	GAGTC	2 cut(s)	180, 747
Ppu21I	YACGTR	1 cut(s)	209
PshBI	ATTAAT	2 cut(s)	198, 291
PsiI	TTATAA	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	587
PspGI	CCWGG	1 cut(s)	587
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	215, 429, 798
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	369
SacI	GAGCTC	1 cut(s)	229
SalI	GTCGAC	1 cut(s)	73
SaqAI	TTAA	5 cut(s)	162, 198, 291, 434, 621
SatI	GCNGC	6 cut(s)	56, 105, 108, 135, 138, 522
Sau3AI	GATC	4 cut(s)	231, 469, 676, 786
Sau96I	GGNCC	3 cut(s)	215, 429, 798
SchI	GAGTC	2 cut(s)	180, 748
ScrFI	CCNGG	1 cut(s)	589
SduI	GDGCHC	2 cut(s)	148, 229
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	2 cut(s)	429, 798
SmiMI	CAYNNNNRTG	1 cut(s)	369
SnaBI	TACGTA	1 cut(s)	209
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	3 cut(s)	164, 288, 443
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	2 cut(s)	105, 524
SspMI	CTAG	4 cut(s)	84, 141, 257, 850
SstI	GAGCTC	1 cut(s)	229
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	587
TaaI	ACNGT	2 cut(s)	341, 493
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	2 cut(s)	74, 545
TasI	AATT	3 cut(s)	164, 288, 443
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	3 cut(s)	45, 479, 554
Tru1I	TTAA	5 cut(s)	162, 198, 291, 434, 621
Tru9I	TTAA	5 cut(s)	162, 198, 291, 434, 621
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	5 cut(s)	55, 107, 134, 137, 521
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	4 cut(s)	309, 353, 471, 710
TspGWI	ACGGA	2 cut(s)	194, 454
TspRI	CASTG	1 cut(s)	718
VpaK11BI	GGWCC	2 cut(s)	429, 798
VspI	ATTAAT	2 cut(s)	198, 291
XapI	RAATTY	2 cut(s)	164, 443
XbaI	TCTAGA	1 cut(s)	256
XceI	RCATGY	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	74
XspI	CTAG	4 cut(s)	84, 141, 257, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.