Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005143

Physical Location & Seq

Genomic Coordinates Reverse (-)

28897163 .. 28899187

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGACTAGAAGAAGGATCGGATAGATTCATGAAACAGCAAGAGCAGTGCCAGTCAACCCGTATCAGCATTGCCTCTAACAATAAGGCCACAGCAACTCTGAAAGCTGTGTCTGCAGCAGCTGCTAGGGTTCATCCTCCAACTGTCAAATTTTCAGATGATACAGAGAGGCTCCAACACATTAATAGCATACGGAATTCTCCTGATGGAGCACAGGTCAAGCGTGTTATCGACCTGCTGCGGAAGACAAGGCAGGCTTTCACGCCTGAGGGAATATACGAAAACTGTTTTGTTGATGTGAACCACAATCAAACTGTCTTTAAGTGTCTGACAGATAACCCAAAAGTTCACTATGATGGAAAATGCTTCTCGTATAAGTCCAAGCATGCTGTGAAGGACAGAAGCCAACTACTGGCCATAGTACAGAAATTTCCAGAGGGCATACCTGTGATTGATCTCAAGGATGCATACCCCAGTGTAATGGAAGACCTGCAGGCTCTAAAAGCTGCTGGTGACATATGGCTTCTTTCAAGCTTCAGTGCACAAGAGGATATAGCATATCCGAATGACCCTAAGTTGCCCCGCATCGAGGTTGATGATGACCTTAAAACATGCTTCAGGAAAATAGAGTTGCCTAGCAATATGGTTGATATTGAGAAGTATCTTCAGAAGAATGGGATGGGGCCTGCCACAGACTCTGCAAGGAGAAGTGCTATGGTTCAGAGTCTAGTCGGGTCTTCTTATTGCAAGGACAAGAAGAACAAGAAGAAGAAGCCTGAGATCAGCAAGAGGACCAAACTAACCAATACCCATCTTCCTGAGCTTTTGGAGAGCTGGAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005673 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_beta

Protein Analysis

282

Amino Acids

31.67

Weight (kDa)

9.06

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIE_beta	PF02186	72 - 131	3.6e-06	TFIIE beta subunit core domain
TFA2_Winged_2	PF18121	132 - 189	7e-15	TFA2 Winged helix domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20330
fragaria_vesca	FvH4_3g33500 FvH4_5g01870
malus_domestica	MD06G1076900.v1.1 MD14G1098300.v1.1
prunus_persica	Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1 Prupe.5G094900_v2.0.a1
pyrus_communis	pycom06g07450 pycom14g09650
rosa_chinensis	RchiOBHm_Chr5g0060921 RchiOBHm_Chr7g0198651
rosa_laevigata	RLG00000003851 RLG00000035413
rosa_multiflora	Rmu_sc0000420.1_g000016 Rmu_sc0009374.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019720 Rroxscaffold_3G00257560
rosa_rugosa	Rorug05G0334900 Rorug05G0335000 Rorug07G0048900
rosa_samantha	Rh5AG397900 Rh5BG410500 Rh5CG435700 Rh5DG425100 Rh7AG172500 Rh7BG176000 Rh7CG181900
rosa_wichuraiana	Rw5G037520 Rw7G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	243, 498
AccB7I	CCANNNNNTGG	1 cut(s)	412
AciI	CCGC	2 cut(s)	241, 583
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	3 cut(s)	149, 196, 428
AcuI	CTGAAG	3 cut(s)	520, 601, 650
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	2 cut(s)	412, 589
AgsI	TTSAA	1 cut(s)	531
AluBI	AGCT	6 cut(s)	107, 122, 506, 534, 823, 834
AluI	AGCT	6 cut(s)	107, 122, 506, 534, 823, 834
Alw21I	GWGCWC	2 cut(s)	214, 544
Alw44I	GTGCAC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	25
AlwNI	CAGNNNCTG	2 cut(s)	122, 698
AoxI	GGCC	3 cut(s)	87, 414, 683
ApaLI	GTGCAC	1 cut(s)	540
ApeKI	GCWGC	5 cut(s)	116, 119, 122, 238, 506
ApoI	RAATTY	3 cut(s)	149, 196, 428
AseI	ATTAAT	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	683, 792
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	792
AxyI	CCTNAGG	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	416
BbsI	GAAGAC	3 cut(s)	251, 492, 729
Bbv12I	GWGCWC	2 cut(s)	214, 544
BbvI	GCAGC	5 cut(s)	109, 128, 131, 225, 493
BccI	CCATC	4 cut(s)	200, 350, 673, 819
BfaI	CTAG	4 cut(s)	8, 126, 636, 728
BfmI	CTRYAG	2 cut(s)	114, 491
BfuAI	ACCTGC	2 cut(s)	243, 498
BisI	GCNGC	5 cut(s)	117, 120, 123, 239, 507
BlsI	GCNGC	5 cut(s)	118, 121, 124, 240, 508
Bme18I	GGWCC	1 cut(s)	792
BmgT120I	GGNCC	2 cut(s)	683, 792
BmiI	GGNNCC	2 cut(s)	173, 684
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	454, 594
BmuI	ACTGGG	1 cut(s)	468
BpiI	GAAGAC	3 cut(s)	251, 492, 729
Bpu10I	CCTNAGC	1 cut(s)	819
BpuEI	CTTGAG	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 589
Bse1I	ACTGG	3 cut(s)	52, 417, 474
Bse21I	CCTNAGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	133, 469, 684
BseLI	CCNNNNNNNGG	2 cut(s)	412, 589
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	258, 768, 810
BseNI	ACTGG	3 cut(s)	52, 417, 474
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	5 cut(s)	109, 128, 131, 225, 493
BshFI	GGCC	3 cut(s)	89, 416, 685
BsiHKAI	GWGCWC	2 cut(s)	214, 544
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	412, 589
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	89, 416, 685
Bsp1286I	GDGCHC	2 cut(s)	214, 544
Bsp143I	GATC	3 cut(s)	17, 454, 780
BspACI	CCGC	2 cut(s)	241, 583
BspANI	GGCC	3 cut(s)	89, 416, 685
BspCNI	CTCAG	3 cut(s)	259, 769, 811
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	173, 684
BspMAI	CTGCAG	2 cut(s)	118, 495
BspMI	ACCTGC	2 cut(s)	243, 498
BspPI	GGATC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	52, 417, 474
BssMI	GATC	3 cut(s)	17, 454, 780
Bst4CI	ACNGT	3 cut(s)	145, 287, 316
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstC8I	GCNNGC	4 cut(s)	255, 387, 495, 687
BstDEI	CTNAG	4 cut(s)	267, 573, 777, 819
BstF5I	GGATG	3 cut(s)	133, 469, 684
BstKTI	GATC	3 cut(s)	20, 457, 783
BstMBI	GATC	3 cut(s)	17, 454, 780
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 122, 503
BstNSI	RCATGY	2 cut(s)	389, 615
BstSFI	CTRYAG	2 cut(s)	114, 491
BstSLI	GKGCMC	1 cut(s)	544
BstV1I	GCAGC	5 cut(s)	109, 128, 131, 225, 493
BstV2I	GAAGAC	3 cut(s)	251, 492, 729
BstXI	CCANNNNNNTGG	1 cut(s)	481
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	89, 416, 685
BtsCI	GGATG	3 cut(s)	133, 469, 684
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	3 cut(s)	53, 481, 544
BveI	ACCTGC	2 cut(s)	243, 498
Cac8I	GCNNGC	4 cut(s)	255, 387, 495, 687
CaiI	CAGNNNCTG	2 cut(s)	122, 698
CciI	TCATGA	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	683, 792
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	3 cut(s)	31, 386, 612
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	4 cut(s)	267, 573, 777, 819
DpnI	GATC	3 cut(s)	19, 456, 782
DpnII	GATC	3 cut(s)	17, 454, 780
EaeI	YGGCCR	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	792
Eco57I	CTGAAG	3 cut(s)	520, 601, 650
Eco81I	CCTNAGG	1 cut(s)	267
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRI	GAATTC	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	469
FaeI	CATG	3 cut(s)	34, 389, 615
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	30, 385, 611
FauI	CCCGC	1 cut(s)	590
FauNDI	CATATG	1 cut(s)	518
Fnu4HI	GCNGC	5 cut(s)	117, 120, 123, 239, 507
FokI	GGATG	3 cut(s)	120, 476, 691
Fsp4HI	GCNGC	5 cut(s)	117, 120, 123, 239, 507
FspBI	CTAG	4 cut(s)	8, 126, 636, 728
GluI	GCNGC	5 cut(s)	117, 120, 123, 239, 507
HaeIII	GGCC	3 cut(s)	89, 416, 685
Hin1II	CATG	3 cut(s)	34, 389, 615
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	3 cut(s)	27, 695, 724
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	4 cut(s)	57, 301, 349, 542
Hpy188I	TCNGA	7 cut(s)	22, 102, 157, 330, 564, 669, 723
Hpy188III	TCNNGA	5 cut(s)	31, 203, 434, 619, 818
Hpy8I	GTNNAC	4 cut(s)	57, 301, 349, 542
HpyAV	CCTTC	2 cut(s)	8, 388
HpyCH4III	ACNGT	3 cut(s)	145, 287, 316
HpyCH4V	TGCA	6 cut(s)	116, 467, 493, 542, 701, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 122, 503
HpyF3I	CTNAG	4 cut(s)	267, 573, 777, 819
Hsp92II	CATG	3 cut(s)	34, 389, 615
Kzo9I	GATC	3 cut(s)	17, 454, 780
LmnI	GCTCC	2 cut(s)	177, 209
Lsp1109I	GCAGC	5 cut(s)	109, 128, 131, 225, 493
LweI	GCATC	2 cut(s)	454, 594
MaeI	CTAG	4 cut(s)	8, 126, 636, 728
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	3 cut(s)	19, 456, 782
MboI	GATC	3 cut(s)	17, 454, 780
MhlI	GDGCHC	2 cut(s)	214, 544
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	4 cut(s)	149, 196, 428, 841
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	2 cut(s)	689, 733
MmeI	TCCRAC	2 cut(s)	164, 199
MnlI	CCTC	8 cut(s)	85, 147, 162, 262, 430, 541, 583, 783
Mox20I	TGGCCA	1 cut(s)	416
Mph1103I	ATGCAT	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	3 cut(s)	183, 321, 606
MslI	CAYNNNNRTG	2 cut(s)	354, 446
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	113, 122, 503
NdeI	CATATG	1 cut(s)	518
NdeII	GATC	3 cut(s)	17, 454, 780
NlaIII	CATG	3 cut(s)	34, 389, 615
NlaIV	GGNNCC	2 cut(s)	173, 684
NmuCI	GTSAC	1 cut(s)	512
NsiI	ATGCAT	1 cut(s)	469
NspI	RCATGY	2 cut(s)	389, 615
PaeI	GCATGC	1 cut(s)	389
PagI	TCATGA	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	5 cut(s)	118, 121, 124, 240, 508
PleI	GAGTC	2 cut(s)	689, 732
PpsI	GAGTC	2 cut(s)	689, 732
PshBI	ATTAAT	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	173, 684
PspPI	GGNCC	2 cut(s)	683, 792
PstI	CTGCAG	2 cut(s)	118, 495
PstNI	CAGNNNCTG	2 cut(s)	122, 698
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	2 cut(s)	354, 446
SaqAI	TTAA	3 cut(s)	183, 321, 606
SatI	GCNGC	5 cut(s)	117, 120, 123, 239, 507
Sau3AI	GATC	3 cut(s)	17, 454, 780
Sau96I	GGNCC	2 cut(s)	683, 792
SbfI	CCTGCAGG	1 cut(s)	495
SchI	GAGTC	2 cut(s)	689, 733
SdaI	CCTGCAGG	1 cut(s)	495
SduI	GDGCHC	2 cut(s)	214, 544
SfaNI	GCATC	2 cut(s)	454, 594
SfcI	CTRYAG	2 cut(s)	114, 491
SinI	GGWCC	1 cut(s)	792
SmiMI	CAYNNNNRTG	2 cut(s)	354, 446
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SphI	GCATGC	1 cut(s)	389
Sse8387I	CCTGCAGG	1 cut(s)	495
Sse9I	AATT	4 cut(s)	149, 196, 428, 841
SsiI	CCGC	2 cut(s)	241, 583
SspMI	CTAG	4 cut(s)	8, 126, 636, 728
TaaI	ACNGT	3 cut(s)	145, 287, 316
TaqI	TCGA	2 cut(s)	231, 588
TasI	AATT	4 cut(s)	149, 196, 428, 841
TatI	WGTACW	1 cut(s)	421
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	3 cut(s)	183, 321, 606
Tru9I	TTAA	3 cut(s)	183, 321, 606
TscAI	CASTG	3 cut(s)	53, 481, 544
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	5 cut(s)	116, 119, 122, 238, 506
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	19, 47, 122
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	3 cut(s)	53, 481, 544
Van91I	CCANNNNNTGG	1 cut(s)	412
VneI	GTGCAC	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	792
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	3 cut(s)	149, 196, 428
XceI	RCATGY	2 cut(s)	389, 615
XspI	CTAG	4 cut(s)	8, 126, 636, 728
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.