AT4G21740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016687
Physical Location & Seq
Forward (+)
11545631 .. 11546716
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21740.1

Sequence Viewer

Length: 471 bp
ATGGCTCATCTCTTAAACCGCGTTAGATCTTCCTGGTCGTCGATCTTACCATTAACTATAACATTCCTCGTCATCTTCACCGGAAACTCACTCGCCGGAGAATTACGTCCTTCCGATCATGGCTTACAGTACCAATTCAGCTCACCACCGACAGAATCTCACTCACCTCCGGGAAAAATGAAGTCCTTCTTTGGAGATTCTCATTCTTCTTCTCCTCCTCCTTCTCACCCTCAGCTCCTCCCTAAAGCCACGGCGGCAGACGGCGGAGACGACGATTCTTGGTGGCGAGATGGAGCTGGGATCAGACGTGATCACGTGATGAGGCACGTGTTTCTTGCGGCGAGTATCATCTGCGGCGTCTCCGGCGTTGCGCTTCTGGTGGTTTTTACTTTGATTTACTTCTTTAGGTATCGTAAACATAATCATTCGAACTCACCCACCGGTAACGATTCTAAAGAAATTATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.2

Weight (kDa)

8.89

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30515 AT4G21740
fragaria_vesca FvH4_3g10110 FvH4_3g10110
malus_domestica MD05G1272900.v1.1 MD10G1253000.v1.1
prunus_persica Prupe.4G090500_v2.0.a1
pyrus_communis pycom10g20870
rosa_chinensis RchiOBHm_Chr5g0016051
rosa_laevigata RLG00000032237
rosa_multiflora Rmu_sc0000299.1_g000015
rosa_roxburghii Rroxscaffold_1G00060600
rosa_rugosa Rorug05G0030900
rosa_wichuraiana Rw5G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 5 cut(s) 19, 254, 264, 338, 354
AclWI GGATC 1 cut(s) 308
AcvI CACGTG 2 cut(s) 316, 328
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 327
AgeI ACCGGT 1 cut(s) 440
AjiI CACGTC 1 cut(s) 308
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 3 cut(s) 141, 235, 296
AluI AGCT 3 cut(s) 141, 235, 296
Alw26I GTCTC 2 cut(s) 261, 364
AlwI GGATC 1 cut(s) 308
AsiGI ACCGGT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 373
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 5 cut(s) 70, 135, 156, 218, 426
AsuII TTCGAA 1 cut(s) 428
BbrPI CACGTG 2 cut(s) 316, 328
BbvCI CCTCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 284
BceAI ACGGC 2 cut(s) 267, 277
BciT130I CCWGG 1 cut(s) 34
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 261, 364
BglI GCCNNNNNGGC 1 cut(s) 254
BglII AGATCT 1 cut(s) 26
BisI GCNGC 3 cut(s) 255, 339, 355
BlsI GCNGC 3 cut(s) 256, 340, 356
Bme1390I CCNGG 2 cut(s) 34, 171
BmgBI CACGTC 1 cut(s) 308
BmrFI CCNGG 2 cut(s) 34, 171
Bpu10I CCTNAGC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 171
BsaAI YACGTR 2 cut(s) 316, 328
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 2 cut(s) 80, 440
Bse118I RCCGGY 1 cut(s) 440
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 245
BseRI GAGGAG 3 cut(s) 204, 207, 227
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 21
BshTI ACCGGT 1 cut(s) 440
BsiSI CCGG 5 cut(s) 81, 96, 170, 363, 441
BsmAI GTCTC 2 cut(s) 261, 364
BsmBI CGTCTC 2 cut(s) 261, 364
Bsp119I TTCGAA 1 cut(s) 428
Bsp143I GATC 5 cut(s) 26, 42, 115, 300, 310
BspACI CCGC 5 cut(s) 19, 254, 264, 338, 354
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 21
BspPI GGATC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 5 cut(s) 26, 42, 115, 300, 310
BssNI GRCGYC 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 357
BstBAI YACGTR 2 cut(s) 316, 328
BstBI TTCGAA 1 cut(s) 428
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 249
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 5 cut(s) 29, 45, 118, 303, 313
BstMAI GTCTC 2 cut(s) 261, 364
BstMBI GATC 5 cut(s) 26, 42, 115, 300, 310
BstMWI GCNNNNNNNGC 2 cut(s) 254, 363
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 2 cut(s) 32, 169
BstUI CGCG 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 249
BtrI CACGTC 1 cut(s) 308
CfoI GCGC 1 cut(s) 373
Cfr10I RCCGGY 1 cut(s) 440
CseI GACGC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 130
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 1 cut(s) 119
CviJI RGCY 6 cut(s) 5, 123, 141, 235, 248, 296
CviKI_1 RGCY 6 cut(s) 5, 123, 141, 235, 248, 296
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 231
DpnI GATC 5 cut(s) 28, 44, 117, 302, 312
DpnII GATC 5 cut(s) 26, 42, 115, 300, 310
EciI GGCGGA 1 cut(s) 279
Eco72I CACGTG 2 cut(s) 316, 328
EcoRII CCWGG 1 cut(s) 32
Esp3I CGTCTC 2 cut(s) 261, 364
FaeI CATG 1 cut(s) 122
FaiI YATR 4 cut(s) 59, 120, 420, 464
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 1 cut(s) 118
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 3 cut(s) 255, 339, 355
Fsp4HI GCNGC 3 cut(s) 255, 339, 355
GlaI GCGC 1 cut(s) 372
GluI GCNGC 3 cut(s) 255, 339, 355
GsaI CCCAGC 1 cut(s) 300
HapII CCGG 5 cut(s) 81, 96, 170, 363, 441
HgaI GACGC 1 cut(s) 346
HhaI GCGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HinfI GANTC 4 cut(s) 155, 197, 275, 449
HpaII CCGG 5 cut(s) 81, 96, 170, 363, 441
HphI GGTGA 5 cut(s) 70, 135, 156, 218, 426
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 115, 305
Hpy8I GTNNAC 1 cut(s) 416
Hpy99I CGWCG 2 cut(s) 43, 275
HpyAV CCTTC 3 cut(s) 120, 196, 231
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4IV ACGT 4 cut(s) 106, 307, 315, 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 363
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 4 cut(s) 106, 307, 315, 327
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 5 cut(s) 26, 42, 115, 300, 310
LmnI GCTCC 2 cut(s) 240, 293
LpnPI CCDG 9 cut(s) 19, 46, 94, 109, 183, 282, 362, 376, 454
MaeII ACGT 4 cut(s) 106, 307, 315, 327
MaeIII GTNAC 1 cut(s) 443
MalI GATC 5 cut(s) 28, 44, 117, 302, 312
MboI GATC 5 cut(s) 26, 42, 115, 300, 310
MboII GAAGA 4 cut(s) 21, 67, 198, 201
MflI RGATCY 1 cut(s) 26
MluCI AATT 3 cut(s) 101, 134, 459
MnlI CCTC 7 cut(s) 77, 177, 225, 228, 240, 248, 315
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 2 cut(s) 14, 53
MspI CCGG 5 cut(s) 81, 96, 170, 363, 441
MspR9I CCNGG 2 cut(s) 34, 171
MvaI CCWGG 1 cut(s) 34
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 254, 363
NciI CCSGG 1 cut(s) 171
NdeII GATC 5 cut(s) 26, 42, 115, 300, 310
NlaIII CATG 1 cut(s) 122
NspV TTCGAA 1 cut(s) 428
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 4 cut(s) 155, 197, 275, 449
PfoI TCCNGGA 1 cut(s) 169
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 3 cut(s) 256, 340, 356
PmaCI CACGTG 2 cut(s) 316, 328
PmlI CACGTG 2 cut(s) 316, 328
Ppu21I YACGTR 2 cut(s) 316, 328
Psp6I CCWGG 1 cut(s) 32
PspCI CACGTG 2 cut(s) 316, 328
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 14, 53
SatI GCNGC 3 cut(s) 255, 339, 355
Sau3AI GATC 5 cut(s) 26, 42, 115, 300, 310
ScrFI CCNGG 2 cut(s) 34, 171
SetI ASST 9 cut(s) 109, 143, 169, 237, 298, 310, 318, 330, 410
SfuI TTCGAA 1 cut(s) 428
Sse9I AATT 3 cut(s) 101, 134, 459
SsiI CCGC 5 cut(s) 19, 254, 264, 338, 354
StyD4I CCNGG 2 cut(s) 32, 169
TaaI ACNGT 1 cut(s) 129
TaiI ACGT 4 cut(s) 109, 310, 318, 330
TaqI TCGA 2 cut(s) 41, 428
TasI AATT 3 cut(s) 101, 134, 459
TauI GCSGC 3 cut(s) 257, 341, 357
TfiI GAWTC 4 cut(s) 155, 197, 275, 449
Tru1I TTAA 2 cut(s) 14, 53
Tru9I TTAA 2 cut(s) 14, 53
TspDTI ATGAA 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.