Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016687

Physical Location & Seq

Genomic Coordinates Reverse (-)

1986550 .. 1987113

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0030900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTCTCACAGGGGCTGGAAAATCTGTGCTACTGTTACTGGCATTCTCTTCATCACCATCTTAGTGGTCTTAGTCGTTCTGTTCCTTACAGTCTTGAAGATCAAAGAACCTGACATTGTGGCGAGGCCGGTTAACCTAGAAAGCTATGAAGTGGTGGTCTTTCCGGCGATAAAGTTTAATGTATCGGTCGGAATTTTGATCACAGTGAAGAATCGAAACTATGGAAGCTTCAAGTATGACAATAGCACAGCTCTTATCAGTTATCGTGACAAAGTTATCGCTGTAACTCCACTGAAAGATGGTACGATCCCATCTCATAAGAAGTATAACATCACGGCTTCTATGGATATATTAGCAGACAAACTGCTATTTGATTCAAACTTCCTAAGAGACTTGCGTGCCGGGGTACTCAATTTTACTTCACACACCACAGTGCATGGGAAGGGGAGCTTGTTGAAGATCTTTCATAAAAAGGCTACTAGTAAGACCGATTGTAACATCTCTATCATTGTTGCATCTCAGAGCGTCGATTCCGCTTGCACAACCTCGATCAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.62

Weight (kDa)

9.63

Isoelectric Point (pI)

25.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30515 AT4G21740
fragaria_vesca	FvH4_3g10110 FvH4_3g10110
malus_domestica	MD05G1272900.v1.1 MD10G1253000.v1.1
prunus_persica	Prupe.4G090500_v2.0.a1
pyrus_communis	pycom10g20870
rosa_chinensis	RchiOBHm_Chr5g0016051
rosa_laevigata	RLG00000032237
rosa_multiflora	Rmu_sc0000299.1_g000015
rosa_roxburghii	Rroxscaffold_1G00060600
rosa_rugosa	Rorug05G0030900
rosa_wichuraiana	Rw5G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	2 cut(s)	307, 411
AgsI	TTSAA	4 cut(s)	100, 235, 381, 460
AhlI	ACTAGT	1 cut(s)	482
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	4 cut(s)	147, 231, 254, 453
AluI	AGCT	4 cut(s)	147, 231, 254, 453
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	49
BccI	CCATC	3 cut(s)	68, 296, 322
BceAI	ACGGC	1 cut(s)	354
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	387
BcuI	ACTAGT	1 cut(s)	482
BfaI	CTAG	2 cut(s)	140, 483
BglII	AGATCT	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	405
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	131, 167, 405
BsmAI	GTCTC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	5 cut(s)	102, 201, 309, 462, 552
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	535
BspPI	GGATC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	5 cut(s)	102, 201, 309, 462, 552
Bst4CI	ACNGT	4 cut(s)	37, 94, 208, 436
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	402, 541
BstDEI	CTNAG	4 cut(s)	64, 73, 389, 522
BstKTI	GATC	5 cut(s)	105, 204, 312, 465, 555
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	5 cut(s)	102, 201, 309, 462, 552
BstMCI	CGRYCG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	462
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	130
BtsIMutI	CAGTG	3 cut(s)	213, 293, 441
Cac8I	GCNNGC	2 cut(s)	402, 541
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	130
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	306, 410
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	9 cut(s)	5, 18, 130, 147, 231, 254, 341, 453, 479
CviKI_1	RGCY	9 cut(s)	5, 18, 130, 147, 231, 254, 341, 453, 479
CviQI	GTAC	2 cut(s)	306, 410
DdeI	CTNAG	4 cut(s)	64, 73, 389, 522
DpnI	GATC	5 cut(s)	104, 203, 311, 464, 554
DpnII	GATC	5 cut(s)	102, 201, 309, 462, 552
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
FaeI	CATG	1 cut(s)	443
FaiI	YATR	9 cut(s)	150, 225, 240, 321, 330, 347, 353, 441, 471
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	201
FspBI	CTAG	2 cut(s)	140, 483
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	3 cut(s)	131, 167, 405
HgaI	GACGC	1 cut(s)	517
Hin1II	CATG	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	3 cut(s)	214, 377, 533
HpaI	GTTAAC	1 cut(s)	136
HpaII	CCGG	3 cut(s)	131, 167, 405
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	194, 525
Hpy188III	TCNNGA	2 cut(s)	97, 269
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	4 cut(s)	37, 94, 208, 436
HpyCH4V	TGCA	3 cut(s)	439, 518, 543
HpyF3I	CTNAG	4 cut(s)	64, 73, 389, 522
Hsp92II	CATG	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	201
KspAI	GTTAAC	1 cut(s)	136
Kzo9I	GATC	5 cut(s)	102, 201, 309, 462, 552
LmnI	GCTCC	1 cut(s)	450
LpnPI	CCDG	6 cut(s)	4, 27, 126, 144, 180, 418
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	2 cut(s)	140, 483
MaeIII	GTNAC	4 cut(s)	37, 269, 286, 497
MalI	GATC	5 cut(s)	104, 203, 311, 464, 554
MboI	GATC	5 cut(s)	102, 201, 309, 462, 552
MboII	GAAGA	4 cut(s)	43, 112, 223, 472
MflI	RGATCY	1 cut(s)	462
MluCI	AATT	2 cut(s)	195, 415
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	2 cut(s)	120, 559
MseI	TTAA	2 cut(s)	135, 180
MslI	CAYNNNNRTG	2 cut(s)	65, 434
MspI	CCGG	3 cut(s)	131, 167, 405
MspR9I	CCNGG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	5 cut(s)	102, 201, 309, 462, 552
NlaIII	CATG	1 cut(s)	443
NmuCI	GTSAC	1 cut(s)	269
OliI	CACNNNNGTG	1 cut(s)	434
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	214, 377, 533
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	462
RsaI	GTAC	2 cut(s)	307, 411
RsaNI	GTAC	2 cut(s)	306, 410
RseI	CAYNNNNRTG	2 cut(s)	65, 434
SaqAI	TTAA	2 cut(s)	135, 180
Sau3AI	GATC	5 cut(s)	102, 201, 309, 462, 552
ScrFI	CCNGG	1 cut(s)	406
SetI	ASST	7 cut(s)	115, 141, 149, 233, 256, 455, 551
SfaNI	GCATC	1 cut(s)	527
SmiMI	CAYNNNNRTG	2 cut(s)	65, 434
SpeI	ACTAGT	1 cut(s)	482
Sse9I	AATT	2 cut(s)	195, 415
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	2 cut(s)	140, 483
StyD4I	CCNGG	1 cut(s)	404
TaaI	ACNGT	4 cut(s)	37, 94, 208, 436
TaqI	TCGA	3 cut(s)	217, 531, 551
TaqII	GACCGA	2 cut(s)	178, 506
TasI	AATT	2 cut(s)	195, 415
TfiI	GAWTC	3 cut(s)	214, 377, 533
Tru1I	TTAA	2 cut(s)	135, 180
Tru9I	TTAA	2 cut(s)	135, 180
TscAI	CASTG	3 cut(s)	213, 300, 441
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	3 cut(s)	43, 165, 458
TspRI	CASTG	3 cut(s)	213, 300, 441
XapI	RAATTY	1 cut(s)	195
XspI	CTAG	2 cut(s)	140, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.