Rroxscaffold_1G00060600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016687
Physical Location & Seq
Forward (+)
82829118 .. 82829839
722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060600.1

Sequence Viewer

Length: 561 bp
ATGGTTGTTGGTGTATCTCCGACCACAGACCACAAGCCCCCCACAGTTTCTCCATATATACTCCCCCAAAAACCCACTTCCCAGCTCCCCACCACTCTTCTGAAACTTCACCGTTCACGTCTGAAGAATACAGATGAAGAGAGAGATGGCGGGTTCAGTAAAACTCAGCGCAACGATCACGGCGTTGGTGATGGTGATGGCGATGGGATCGGAAGCCCGGGAACTGCGGCCGTCGGATCACGGCCTGGTGTACACGCCGGCGGGGAACACTTCGGTGGCGCCGGAGGAGGCGAAGTCGTTCTTCAGCGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGGAGAGTCGGGAGGGGTGGCATTGCCGAAGGCGATGAACTCGAACGACACGTCGTGGTGGGAGGGAGTGAACGCACGTGACCGGGGGAGGGATCACGTGAGGGACGTGCTGGTGCTGGTGAGCTTGCTTTGTGGGATTACAGGTGTCGTTCTCTTTGTGGCCTCCGCTTTTGTTTATCTCTTGAGGTACCGAAAGCGCAAAGCTTCATCTCCTCCTCCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.94

Weight (kDa)

10.67

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30515 AT4G21740
fragaria_vesca FvH4_3g10110 FvH4_3g10110
malus_domestica MD05G1272900.v1.1 MD10G1253000.v1.1
prunus_persica Prupe.4G090500_v2.0.a1
pyrus_communis pycom10g20870
rosa_chinensis RchiOBHm_Chr5g0016051
rosa_laevigata RLG00000032237
rosa_multiflora Rmu_sc0000299.1_g000015
rosa_roxburghii Rroxscaffold_1G00060600
rosa_rugosa Rorug05G0030900
rosa_wichuraiana Rw5G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 522
AccB1I GGYRCC 2 cut(s) 278, 522
AciI CCGC 5 cut(s) 150, 227, 261, 307, 501
AclWI GGATC 3 cut(s) 215, 244, 435
AcoI YGGCCR 1 cut(s) 228
AcuI CTGAAG 2 cut(s) 143, 287
AcvI CACGTG 2 cut(s) 413, 433
AcyI GRCGYC 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 390
AfaI GTAC 2 cut(s) 252, 524
AfiI CCNNNNNNNGG 1 cut(s) 424
AflIII ACRYGT 1 cut(s) 384
AjiI CACGTC 3 cut(s) 119, 387, 442
AjnI CCWGG 1 cut(s) 244
AleI CACNNNNGTG 1 cut(s) 273
AluBI AGCT 3 cut(s) 85, 459, 539
AluI AGCT 3 cut(s) 85, 459, 539
AlwI GGATC 3 cut(s) 215, 244, 435
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 3 cut(s) 228, 242, 495
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
Asp700I GAANNNNTTC 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 522
AspLEI GCGC 3 cut(s) 171, 281, 534
AsuC2I CCSGG 3 cut(s) 218, 219, 419
AsuHPI GGTGA 4 cut(s) 101, 200, 206, 466
AvaI CYCGRG 1 cut(s) 217
BanI GGYRCC 2 cut(s) 278, 522
BbrPI CACGTG 2 cut(s) 413, 433
BccI CCATC 4 cut(s) 140, 185, 191, 197
BceAI ACGGC 3 cut(s) 196, 215, 257
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 3 cut(s) 218, 219, 419
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 4 cut(s) 218, 219, 246, 419
BmeT110I CYCGRG 1 cut(s) 217
BmgBI CACGTC 3 cut(s) 119, 387, 442
BmiI GGNNCC 2 cut(s) 280, 524
BmrFI CCNGG 4 cut(s) 218, 219, 246, 419
BpuEI CTTGAG 1 cut(s) 538
BpuMI CCSGG 3 cut(s) 218, 219, 419
BsaAI YACGTR 2 cut(s) 413, 433
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 217, 418
BsaXI ACNNNNNCTCC 4 cut(s) 34, 64, 279, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse118I RCCGGY 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 356
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 217, 418
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 179
BseX3I CGGCCG 1 cut(s) 228
BseYI CCCAGC 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 3 cut(s) 230, 244, 497
BshNI GGYRCC 2 cut(s) 278, 522
BsiEI CGRYCG 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 4 cut(s) 218, 258, 282, 418
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 3 cut(s) 230, 244, 497
BsoBI CYCGRG 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 250
Bsp143I GATC 4 cut(s) 175, 207, 236, 427
BspACI CCGC 5 cut(s) 150, 227, 261, 307, 501
BspANI GGCC 3 cut(s) 230, 244, 497
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 280, 524
BspPI GGATC 3 cut(s) 215, 244, 435
BspT107I GGYRCC 2 cut(s) 278, 522
BsrDI GCAATG 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 217, 418
BssMI GATC 4 cut(s) 175, 207, 236, 427
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 46, 113
Bst6I CTCTTC 2 cut(s) 102, 132
BstACI GRCGYC 1 cut(s) 279
BstAUI TGTACA 1 cut(s) 250
BstBAI YACGTR 2 cut(s) 413, 433
BstC8I GCNNGC 2 cut(s) 259, 461
BstDEI CTNAG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 3 cut(s) 171, 281, 534
BstKTI GATC 4 cut(s) 178, 210, 239, 430
BstMBI GATC 4 cut(s) 175, 207, 236, 427
BstMCI CGRYCG 1 cut(s) 231
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 4 cut(s) 216, 217, 244, 417
BstZI CGGCCG 1 cut(s) 228
BsuRI GGCC 3 cut(s) 230, 244, 497
BtgZI GCGATG 2 cut(s) 216, 383
BtrI CACGTC 3 cut(s) 119, 387, 442
Cac8I GCNNGC 2 cut(s) 259, 461
CfoI GCGC 3 cut(s) 171, 281, 534
Cfr10I RCCGGY 1 cut(s) 257
Cfr9I CCCGGG 1 cut(s) 217
Csp6I GTAC 2 cut(s) 251, 523
CviJI RGCY 8 cut(s) 37, 85, 216, 230, 244, 459, 497, 539
CviKI_1 RGCY 8 cut(s) 37, 85, 216, 230, 244, 459, 497, 539
CviQI GTAC 2 cut(s) 251, 523
DdeI CTNAG 1 cut(s) 165
DinI GGCGCC 1 cut(s) 280
DpnI GATC 4 cut(s) 177, 209, 238, 429
DpnII GATC 4 cut(s) 175, 207, 236, 427
DraIII CACNNNGTG 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 228
EagI CGGCCG 1 cut(s) 228
Eam1104I CTCTTC 2 cut(s) 102, 132
EarI CTCTTC 2 cut(s) 102, 132
EclXI CGGCCG 1 cut(s) 228
Eco52I CGGCCG 1 cut(s) 228
Eco57I CTGAAG 2 cut(s) 143, 287
Eco72I CACGTG 2 cut(s) 413, 433
Eco88I CYCGRG 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 244
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
FaiI YATR 3 cut(s) 55, 57, 59
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 1 cut(s) 452
FauI CCCGC 2 cut(s) 143, 254
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
GlaI GCGC 3 cut(s) 170, 280, 533
GluI GCNGC 1 cut(s) 228
GsaI CCCAGC 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 230, 244, 497
HapII CCGG 4 cut(s) 218, 258, 282, 418
HhaI GCGC 3 cut(s) 171, 281, 534
Hin1I GRCGYC 1 cut(s) 279
Hin6I GCGC 3 cut(s) 169, 279, 532
HinP1I GCGC 3 cut(s) 169, 279, 532
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 1 cut(s) 341
HpaII CCGG 4 cut(s) 218, 258, 282, 418
HphI GGTGA 4 cut(s) 101, 200, 206, 466
Hpy166II GTNNAC 4 cut(s) 116, 251, 253, 406
Hpy188I TCNGA 5 cut(s) 21, 102, 123, 212, 236
Hpy188III TCNNGA 3 cut(s) 345, 517, 558
Hpy8I GTNNAC 4 cut(s) 116, 251, 253, 406
Hpy99I CGWCG 2 cut(s) 236, 391
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 46, 113
HpyCH4IV ACGT 5 cut(s) 118, 386, 412, 432, 441
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 5 cut(s) 118, 386, 412, 432, 441
Hsp92I GRCGYC 1 cut(s) 279
HspAI GCGC 3 cut(s) 169, 279, 532
KasI GGCGCC 1 cut(s) 278
KpnI GGTACC 1 cut(s) 526
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Kzo9I GATC 4 cut(s) 175, 207, 236, 427
LmnI GCTCC 1 cut(s) 90
MaeII ACGT 5 cut(s) 118, 386, 412, 432, 441
MaeIII GTNAC 1 cut(s) 413
MalI GATC 4 cut(s) 177, 209, 238, 429
MboI GATC 4 cut(s) 175, 207, 236, 427
MboII GAAGA 4 cut(s) 89, 136, 149, 293
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 2 cut(s) 44, 214
MreI CGCCGGCG 1 cut(s) 257
MroNI GCCGGC 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 4 cut(s) 218, 258, 282, 418
MspR9I CCNGG 4 cut(s) 218, 219, 246, 419
MvaI CCWGG 1 cut(s) 246
NaeI GCCGGC 1 cut(s) 259
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 3 cut(s) 218, 219, 419
NdeII GATC 4 cut(s) 175, 207, 236, 427
NgoMIV GCCGGC 1 cut(s) 257
NlaIV GGNNCC 2 cut(s) 280, 524
NmuCI GTSAC 1 cut(s) 413
OliI CACNNNNGTG 1 cut(s) 273
PcsI WCGNNNNNNNCGW 3 cut(s) 180, 383, 438
PdiI GCCGGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 297
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 349
PluTI GGCGCC 1 cut(s) 282
PmaCI CACGTG 2 cut(s) 413, 433
PmlI CACGTG 2 cut(s) 413, 433
PpsI GAGTC 1 cut(s) 349
Ppu21I YACGTR 2 cut(s) 413, 433
Psp6I CCWGG 1 cut(s) 244
PspCI CACGTG 2 cut(s) 413, 433
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 280, 524
RsaI GTAC 2 cut(s) 252, 524
RsaNI GTAC 2 cut(s) 251, 523
RseI CAYNNNNRTG 1 cut(s) 273
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 4 cut(s) 175, 207, 236, 427
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 4 cut(s) 218, 219, 246, 419
SfoI GGCGCC 1 cut(s) 280
SgrAI CRCCGGYG 1 cut(s) 257
SmaI CCCGGG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
SsiI CCGC 5 cut(s) 150, 227, 261, 307, 501
SspDI GGCGCC 1 cut(s) 278
StyD4I CCNGG 4 cut(s) 216, 217, 244, 417
TaaI ACNGT 2 cut(s) 46, 113
TaiI ACGT 5 cut(s) 121, 389, 415, 435, 444
TaqI TCGA 1 cut(s) 377
TatI WGTACW 1 cut(s) 250
TauI GCSGC 1 cut(s) 230
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 3 cut(s) 150, 386, 531
TspMI CCCGGG 1 cut(s) 217
XmaI CCCGGG 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.