FvH4_3g10110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016687
Physical Location & Seq
Reverse (-)
5885835 .. 5887433
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10110.t2

Sequence Viewer

Length: 426 bp
ATGAAGAGAGAGATGGTAGTACTGTTGGTGTTGGTGATGGTGATGATGGTGATATCGACGCCCATAGGATCGGAAGCGCGGGAGCTGAGGCCGTCGGATCACGGCTTGGGGTACACGCCGGCGGGGGGGAATACGTCAGAGGCGCCGGCGGAGGCGAAGTCGTTCTTCAGCGGAGGAGGAGGAGGAGGAGGGGGGGGAGGAGAGGCGGGAGGGGTGGCGTTGCCGAAGGCGATGAACTCGAACGACACGTCGTGGTGGGAGGGAGTGAATCAGGCACGTGACGGGGGGAGGAGGGGTCACGTGAGGGATGTGCTGGTGGTGGTGAGCTTGGTTTGCGGGATTACAGGTGTCCTTCTCTTTGTGGCGTCGGCGTTTGTTTATCTGATGAGACGCCGAAAGCGGAAAGCAGAAGCTTCTTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

14.67

Weight (kDa)

9.64

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30515 AT4G21740
fragaria_vesca FvH4_3g10110 FvH4_3g10110
malus_domestica MD05G1272900.v1.1 MD10G1253000.v1.1
prunus_persica Prupe.4G090500_v2.0.a1
pyrus_communis pycom10g20870
rosa_chinensis RchiOBHm_Chr5g0016051
rosa_laevigata RLG00000032237
rosa_multiflora Rmu_sc0000299.1_g000015
rosa_roxburghii Rroxscaffold_1G00060600
rosa_rugosa Rorug05G0030900
rosa_wichuraiana Rw5G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccII CGCG 1 cut(s) 79
AciI CCGC 7 cut(s) 79, 122, 149, 171, 206, 336, 400
AclWI GGATC 2 cut(s) 76, 105
AcuI CTGAAG 1 cut(s) 151
AcvI CACGTG 2 cut(s) 278, 301
AcyI GRCGYC 4 cut(s) 59, 143, 365, 391
AdeI CACNNNGTG 1 cut(s) 252
AfaI GTAC 2 cut(s) 21, 113
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 246
AjiI CACGTC 1 cut(s) 249
AluBI AGCT 3 cut(s) 85, 327, 413
AluI AGCT 3 cut(s) 85, 327, 413
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 2 cut(s) 76, 105
AoxI GGCC 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 2 cut(s) 79, 145
AsuHPI GGTGA 4 cut(s) 46, 52, 61, 334
BanI GGYRCC 1 cut(s) 142
BbrPI CACGTG 2 cut(s) 278, 301
BbvCI CCTCAGC 1 cut(s) 86
BccI CCATC 3 cut(s) 7, 31, 40
BceAI ACGGC 2 cut(s) 76, 118
BcoDI GTCTC 1 cut(s) 382
BfoI RGCGCY 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 21
BmgBI CACGTC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 86
BsaAI YACGTR 2 cut(s) 278, 301
BsaHI GRCGYC 4 cut(s) 59, 143, 365, 391
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 2 cut(s) 118, 145
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 7 cut(s) 189, 192, 195, 198, 201, 213, 304
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 1 cut(s) 142
BsiSI CCGG 2 cut(s) 119, 146
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 382
BsmBI CGTCTC 1 cut(s) 382
BsnI GGCC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 68, 97
BspACI CCGC 7 cut(s) 79, 122, 149, 171, 206, 336, 400
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 2 cut(s) 76, 105
BspT107I GGYRCC 1 cut(s) 142
BsrFI RCCGGY 2 cut(s) 118, 145
BssAI RCCGGY 2 cut(s) 118, 145
BssMI GATC 2 cut(s) 68, 97
BssNI GRCGYC 4 cut(s) 59, 143, 365, 391
Bst4CI ACNGT 1 cut(s) 24
BstACI GRCGYC 4 cut(s) 59, 143, 365, 391
BstBAI YACGTR 2 cut(s) 278, 301
BstC8I GCNNGC 2 cut(s) 120, 147
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 2 cut(s) 79, 145
BstKTI GATC 2 cut(s) 71, 100
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 68, 97
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstUI CGCG 1 cut(s) 79
BsuRI GGCC 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 245
BtrI CACGTC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 120, 147
CfoI GCGC 2 cut(s) 79, 145
Cfr10I RCCGGY 2 cut(s) 118, 145
CseI GACGC 3 cut(s) 67, 354, 399
Csp6I GTAC 2 cut(s) 20, 112
CviJI RGCY 5 cut(s) 85, 91, 105, 327, 413
CviKI_1 RGCY 5 cut(s) 85, 91, 105, 327, 413
CviQI GTAC 2 cut(s) 20, 112
DdeI CTNAG 1 cut(s) 86
DinI GGCGCC 1 cut(s) 144
DpnI GATC 2 cut(s) 70, 99
DpnII GATC 2 cut(s) 68, 97
DraIII CACNNNGTG 1 cut(s) 252
EciI GGCGGA 1 cut(s) 164
Eco32I GATATC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 151
Eco72I CACGTG 2 cut(s) 278, 301
EcoRV GATATC 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 144
EheI GGCGCC 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 382
FaiI YATR 1 cut(s) 65
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FauI CCCGC 4 cut(s) 72, 115, 199, 329
FokI GGATG 1 cut(s) 320
GlaI GCGC 2 cut(s) 78, 144
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 1 cut(s) 91
HapII CCGG 2 cut(s) 119, 146
HgaI GACGC 3 cut(s) 67, 354, 399
HhaI GCGC 2 cut(s) 79, 145
Hin1I GRCGYC 4 cut(s) 59, 143, 365, 391
Hin6I GCGC 2 cut(s) 77, 143
HinP1I GCGC 2 cut(s) 77, 143
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 1 cut(s) 268
HpaII CCGG 2 cut(s) 119, 146
HphI GGTGA 4 cut(s) 46, 52, 61, 334
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 4 cut(s) 73, 97, 139, 384
Hpy188III TCNNGA 1 cut(s) 423
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 4 cut(s) 61, 97, 253, 370
HpyAV CCTTC 2 cut(s) 220, 362
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 4 cut(s) 134, 248, 277, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 4 cut(s) 134, 248, 277, 300
Hsp92I GRCGYC 4 cut(s) 59, 143, 365, 391
HspAI GCGC 2 cut(s) 77, 143
KasI GGCGCC 1 cut(s) 142
KroI GCCGGC 2 cut(s) 118, 145
KroNI GCCGGC 2 cut(s) 120, 147
Kzo9I GATC 2 cut(s) 68, 97
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 132, 159, 257, 299, 330
MaeII ACGT 4 cut(s) 134, 248, 277, 300
MaeIII GTNAC 2 cut(s) 278, 296
MalI GATC 2 cut(s) 70, 99
MboI GATC 2 cut(s) 68, 97
MboII GAAGA 4 cut(s) 16, 157, 408, 411
Mly113I GGCGCC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 75
MreI CGCCGGCG 2 cut(s) 118, 145
MroNI GCCGGC 2 cut(s) 118, 145
MroXI GAANNNNTTC 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 2 cut(s) 119, 146
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 333
NaeI GCCGGC 2 cut(s) 120, 147
NarI GGCGCC 1 cut(s) 143
NdeII GATC 2 cut(s) 68, 97
NgoMIV GCCGGC 2 cut(s) 118, 145
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 278, 296
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PdiI GCCGGC 2 cut(s) 120, 147
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 268
PluTI GGCGCC 1 cut(s) 146
PmaCI CACGTG 2 cut(s) 278, 301
PmlI CACGTG 2 cut(s) 278, 301
Ppu21I YACGTR 2 cut(s) 278, 301
PspCI CACGTG 2 cut(s) 278, 301
PspN4I GGNNCC 1 cut(s) 144
RsaI GTAC 2 cut(s) 21, 113
RsaNI GTAC 2 cut(s) 20, 112
Sau3AI GATC 2 cut(s) 68, 97
ScaI AGTACT 1 cut(s) 21
SetI ASST 8 cut(s) 87, 137, 251, 280, 303, 329, 349, 415
SfoI GGCGCC 1 cut(s) 144
SgrAI CRCCGGYG 2 cut(s) 118, 145
SsiI CCGC 7 cut(s) 79, 122, 149, 171, 206, 336, 400
SspDI GGCGCC 1 cut(s) 142
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 4 cut(s) 137, 251, 280, 303
TaqI TCGA 2 cut(s) 56, 239
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 1 cut(s) 268
TseFI GTSAC 2 cut(s) 278, 296
Tsp45I GTSAC 2 cut(s) 278, 296
TspDTI ATGAA 2 cut(s) 17, 248
XmnI GAANNNNTTC 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.