pycom10g20870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016687
Physical Location & Seq
Forward (+)
23634431 .. 23634868
438 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g20870.1

Sequence Viewer

Length: 438 bp
ATGGCGTTTCTCATCGAAATTGGTGTAGCAGCGATCGCGGTGTTTCTGATTGCGGTGGCGATGGAATCGGACGGCCGAGAGCTGCGGCCGTCCGACCACGGCCTCGTGTACCAGGACCAGGCGCCGGCGAGCGCGAAGTCGCCGACGGAAGAAAAGTCGTTCTTCGTCGGGGGAGGAGGAGGAGGAGAGAATTCGCCGGCGGCGGCCGACGCGGTACAGCCGAAACCGAAGGCGATGAACTCGAGCGACGAGTCGTGGTGGAAGGGCGTGGTGGCACGTGACGATGGGAGGGGTAGGGATCTCGTGAGGGACGTGCTACTGGTGGCGAGCTTGCTTTGTGGGATTGCCGGCGTGGCTCTGTTTGTGGCCTCTGCTTTCGTTTACGTCTTGAGGTACCGAAAGCATAAATCTTTACCGTCAGAAGGTCCGTCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.23

Weight (kDa)

5.66

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30515 AT4G21740
fragaria_vesca FvH4_3g10110 FvH4_3g10110
malus_domestica MD05G1272900.v1.1 MD10G1253000.v1.1
prunus_persica Prupe.4G090500_v2.0.a1
pyrus_communis pycom10g20870
rosa_chinensis RchiOBHm_Chr5g0016051
rosa_laevigata RLG00000032237
rosa_multiflora Rmu_sc0000299.1_g000015
rosa_roxburghii Rroxscaffold_1G00060600
rosa_rugosa Rorug05G0030900
rosa_wichuraiana Rw5G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 393
AccB1I GGYRCC 2 cut(s) 121, 393
AccII CGCG 3 cut(s) 38, 134, 212
AciI CCGC 6 cut(s) 38, 53, 85, 200, 203, 212
AclWI GGATC 1 cut(s) 306
AcoI YGGCCR 3 cut(s) 73, 86, 204
AcsI RAATTY 1 cut(s) 190
AcvI CACGTG 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 3 cut(s) 110, 216, 395
AfiI CCNNNNNNNGG 3 cut(s) 118, 124, 422
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 2 cut(s) 111, 117
AluBI AGCT 2 cut(s) 82, 330
AluI AGCT 2 cut(s) 82, 330
AlwI GGATC 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 5 cut(s) 73, 86, 100, 204, 366
ApeKI GCWGC 2 cut(s) 29, 82
ApoI RAATTY 1 cut(s) 190
AsiSI GCGATCGC 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 393
AspLEI GCGC 2 cut(s) 124, 134
AspS9I GGNCC 2 cut(s) 115, 425
AvaI CYCGRG 1 cut(s) 241
AvaII GGWCC 2 cut(s) 115, 425
BanI GGYRCC 2 cut(s) 121, 393
BauI CACGAG 2 cut(s) 104, 302
BbrPI CACGTG 1 cut(s) 278
BbvI GCAGC 2 cut(s) 41, 69
BccI CCATC 2 cut(s) 55, 278
BceAI ACGGC 3 cut(s) 73, 88, 115
BciT130I CCWGG 2 cut(s) 113, 119
BfoI RGCGCY 1 cut(s) 125
BglI GCCNNNNNGGC 1 cut(s) 353
BisI GCNGC 5 cut(s) 30, 83, 86, 201, 204
BlsI GCNGC 5 cut(s) 31, 84, 87, 202, 205
Bme1390I CCNGG 2 cut(s) 113, 119
Bme18I GGWCC 2 cut(s) 115, 425
BmeT110I CYCGRG 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 115, 425
BmiI GGNNCC 2 cut(s) 123, 395
BmrFI CCNGG 2 cut(s) 113, 119
BpuEI CTTGAG 1 cut(s) 409
BsaAI YACGTR 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 124, 422
Bse118I RCCGGY 3 cut(s) 124, 196, 347
Bse1I ACTGG 1 cut(s) 324
BseBI CCWGG 2 cut(s) 113, 119
BseDI CCNNGG 1 cut(s) 97
BseLI CCNNNNNNNGG 3 cut(s) 118, 124, 422
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 4 cut(s) 189, 192, 195, 198
BseX3I CGGCCG 3 cut(s) 73, 86, 204
BseXI GCAGC 2 cut(s) 41, 69
Bsh1236I CGCG 3 cut(s) 38, 134, 212
Bsh1285I CGRYCG 4 cut(s) 36, 76, 89, 207
BshFI GGCC 5 cut(s) 75, 88, 102, 206, 368
BshNI GGYRCC 2 cut(s) 121, 393
BsiEI CGRYCG 4 cut(s) 36, 76, 89, 207
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 3 cut(s) 125, 197, 348
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 3 cut(s) 118, 124, 422
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 5 cut(s) 75, 88, 102, 206, 368
BsoBI CYCGRG 1 cut(s) 241
Bsp143I GATC 2 cut(s) 33, 298
BspACI CCGC 6 cut(s) 38, 53, 85, 200, 203, 212
BspANI GGCC 5 cut(s) 75, 88, 102, 206, 368
BspFNI CGCG 3 cut(s) 38, 134, 212
BspLI GGNNCC 2 cut(s) 123, 395
BspPI GGATC 1 cut(s) 306
BspT107I GGYRCC 2 cut(s) 121, 393
BsrFI RCCGGY 3 cut(s) 124, 196, 347
BsrI ACTGG 1 cut(s) 324
BssAI RCCGGY 3 cut(s) 124, 196, 347
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 33, 298
BssNI GRCGYC 1 cut(s) 122
BssSI CACGAG 2 cut(s) 104, 302
Bst2BI CACGAG 2 cut(s) 104, 302
Bst2UI CCWGG 2 cut(s) 113, 119
Bst4CI ACNGT 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 122
BstBAI YACGTR 1 cut(s) 278
BstC8I GCNNGC 6 cut(s) 126, 130, 198, 328, 332, 349
BstDSI CCRYGG 1 cut(s) 97
BstFNI CGCG 3 cut(s) 38, 134, 212
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 2 cut(s) 124, 134
BstKTI GATC 2 cut(s) 36, 301
BstMBI GATC 2 cut(s) 33, 298
BstMCI CGRYCG 4 cut(s) 36, 76, 89, 207
BstMWI GCNNNNNNNGC 3 cut(s) 35, 209, 353
BstNI CCWGG 2 cut(s) 113, 119
BstSCI CCNGG 2 cut(s) 111, 117
BstUI CGCG 3 cut(s) 38, 134, 212
BstV1I GCAGC 2 cut(s) 41, 69
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BstZI CGGCCG 3 cut(s) 73, 86, 204
BsuRI GGCC 5 cut(s) 75, 88, 102, 206, 368
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 2 cut(s) 74, 248
BtrI CACGTC 1 cut(s) 313
Cac8I GCNNGC 6 cut(s) 126, 130, 198, 328, 332, 349
CfoI GCGC 2 cut(s) 124, 134
Cfr10I RCCGGY 3 cut(s) 124, 196, 347
Cfr13I GGNCC 2 cut(s) 115, 425
CseI GACGC 1 cut(s) 218
Csp6I GTAC 3 cut(s) 109, 215, 394
CviJI RGCY 9 cut(s) 75, 82, 88, 102, 206, 220, 330, 356, 368
CviKI_1 RGCY 9 cut(s) 75, 82, 88, 102, 206, 220, 330, 356, 368
CviQI GTAC 3 cut(s) 109, 215, 394
DinI GGCGCC 1 cut(s) 123
DpnI GATC 2 cut(s) 35, 300
DpnII GATC 2 cut(s) 33, 298
EaeI YGGCCR 3 cut(s) 73, 86, 204
EagI CGGCCG 3 cut(s) 73, 86, 204
EclXI CGGCCG 3 cut(s) 73, 86, 204
Eco47I GGWCC 2 cut(s) 115, 425
Eco52I CGGCCG 3 cut(s) 73, 86, 204
Eco72I CACGTG 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 111, 117
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
FaiI YATR 1 cut(s) 405
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 323
Fnu4HI GCNGC 5 cut(s) 30, 83, 86, 201, 204
Fsp4HI GCNGC 5 cut(s) 30, 83, 86, 201, 204
GlaI GCGC 2 cut(s) 123, 133
GluI GCNGC 5 cut(s) 30, 83, 86, 201, 204
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 5 cut(s) 75, 88, 102, 206, 368
HapII CCGG 3 cut(s) 125, 197, 348
HgaI GACGC 1 cut(s) 218
HhaI GCGC 2 cut(s) 124, 134
Hin1I GRCGYC 1 cut(s) 122
Hin6I GCGC 2 cut(s) 122, 132
HinP1I GCGC 2 cut(s) 122, 132
HinfI GANTC 2 cut(s) 65, 251
HpaII CCGG 3 cut(s) 125, 197, 348
Hpy166II GTNNAC 2 cut(s) 109, 382
Hpy188I TCNGA 4 cut(s) 48, 70, 94, 421
Hpy188III TCNNGA 3 cut(s) 304, 388, 435
Hpy8I GTNNAC 2 cut(s) 109, 382
Hpy99I CGWCG 4 cut(s) 148, 170, 212, 251
HpyAV CCTTC 3 cut(s) 223, 256, 416
HpyCH4III ACNGT 1 cut(s) 417
HpyCH4IV ACGT 3 cut(s) 277, 312, 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 209, 353
HpySE526I ACGT 3 cut(s) 277, 312, 384
Hsp92I GRCGYC 1 cut(s) 122
HspAI GCGC 2 cut(s) 122, 132
KasI GGCGCC 1 cut(s) 121
KpnI GGTACC 1 cut(s) 397
KroI GCCGGC 3 cut(s) 124, 196, 347
KroNI GCCGGC 3 cut(s) 126, 198, 349
Kzo9I GATC 2 cut(s) 33, 298
LpnPI CCDG 8 cut(s) 98, 104, 125, 131, 138, 210, 305, 361
Lsp1109I GCAGC 2 cut(s) 41, 69
MaeII ACGT 3 cut(s) 277, 312, 384
MaeIII GTNAC 1 cut(s) 278
MalI GATC 2 cut(s) 35, 300
MboI GATC 2 cut(s) 33, 298
MboII GAAGA 2 cut(s) 154, 161
MflI RGATCY 1 cut(s) 298
MluCI AATT 2 cut(s) 18, 190
Mly113I GGCGCC 1 cut(s) 122
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 9 cut(s) 113, 167, 170, 173, 176, 282, 300, 379, 384
MreI CGCCGGCG 2 cut(s) 124, 196
MroNI GCCGGC 3 cut(s) 124, 196, 347
MspI CCGG 3 cut(s) 125, 197, 348
MspR9I CCNGG 2 cut(s) 113, 119
MvaI CCWGG 2 cut(s) 113, 119
MvnI CGCG 3 cut(s) 38, 134, 212
MwoI GCNNNNNNNGC 3 cut(s) 35, 209, 353
NaeI GCCGGC 3 cut(s) 126, 198, 349
NarI GGCGCC 1 cut(s) 122
NdeII GATC 2 cut(s) 33, 298
NgoMIV GCCGGC 3 cut(s) 124, 196, 347
NlaIV GGNNCC 2 cut(s) 123, 395
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdiI GCCGGC 3 cut(s) 126, 198, 349
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 5 cut(s) 31, 84, 87, 202, 205
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 259
PluTI GGCGCC 1 cut(s) 125
PmaCI CACGTG 1 cut(s) 278
PmlI CACGTG 1 cut(s) 278
PpsI GAGTC 1 cut(s) 259
Ppu21I YACGTR 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 111, 117
PspCI CACGTG 1 cut(s) 278
PspGI CCWGG 2 cut(s) 111, 117
PspN4I GGNNCC 2 cut(s) 123, 395
PspPI GGNCC 2 cut(s) 115, 425
PspXI VCTCGAGB 1 cut(s) 241
PsuI RGATCY 1 cut(s) 298
PvuI CGATCG 1 cut(s) 36
RgaI GCGATCGC 1 cut(s) 36
RsaI GTAC 3 cut(s) 110, 216, 395
RsaNI GTAC 3 cut(s) 109, 215, 394
SatI GCNGC 5 cut(s) 30, 83, 86, 201, 204
Sau3AI GATC 2 cut(s) 33, 298
Sau96I GGNCC 2 cut(s) 115, 425
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 113, 119
SetI ASST 7 cut(s) 84, 280, 315, 332, 387, 395, 427
SfaAI GCGATCGC 1 cut(s) 36
SfoI GGCGCC 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 241
SgfI GCGATCGC 1 cut(s) 36
SgrAI CRCCGGYG 2 cut(s) 124, 196
SinI GGWCC 2 cut(s) 115, 425
SlaI CTCGAG 1 cut(s) 241
SmlI CTYRAG 2 cut(s) 241, 388
SmoI CTYRAG 2 cut(s) 241, 388
Sse9I AATT 2 cut(s) 18, 190
SsiI CCGC 6 cut(s) 38, 53, 85, 200, 203, 212
SspDI GGCGCC 1 cut(s) 121
StyD4I CCNGG 2 cut(s) 111, 117
TaaI ACNGT 1 cut(s) 417
TaiI ACGT 3 cut(s) 280, 315, 387
TaqI TCGA 2 cut(s) 15, 242
TasI AATT 2 cut(s) 18, 190
TauI GCSGC 3 cut(s) 88, 203, 206
TfiI GAWTC 1 cut(s) 65
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 2 cut(s) 29, 82
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 251
TspGWI ACGGA 2 cut(s) 161, 417
VpaK11BI GGWCC 2 cut(s) 115, 425
XapI RAATTY 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.