RLG00000032237

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016687
Physical Location & Seq
Reverse (-)
12405555 .. 12405968
414 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032237

Sequence Viewer

Length: 414 bp
ATGGGGGGTTCAGTAAAACTCAGCGCAACGATCACGGCGTTGGTGATGGTGATGGTGATGGCGATGGGATCGGAAGCCCGGGAGCTGCGGCCGTCGGATCACGGCCTGGTGTACACGCCGGCGTGGAACACGTCTGCGGCGCCGGAGGAGGTGAAGACGTTCTTCAGCGGAGGAGGAGGAGGGGGAGGAGGAGAGTCGGGAGGGATGGCATTGCCGAAGGCGATGAACTCGAACGACACGTCGTGGTGGGAGGGAGTGAATGCACGTGGCCGAGGGAGGGATCACGTGAGGGACGTGCTGGTGATGGTGAGCTTGATTTGTGGGATTACAGGTGTCGTTCTCTTTGTGGCCTCCGCTTTTGTTTATCTCTTGAGGTACCGAAAGCACAAAGCTTCATCTCCCTCTTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.35

Weight (kDa)

9.3

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30515 AT4G21740
fragaria_vesca FvH4_3g10110 FvH4_3g10110
malus_domestica MD05G1272900.v1.1 MD10G1253000.v1.1
prunus_persica Prupe.4G090500_v2.0.a1
pyrus_communis pycom10g20870
rosa_chinensis RchiOBHm_Chr5g0016051
rosa_laevigata RLG00000032237
rosa_multiflora Rmu_sc0000299.1_g000015
rosa_roxburghii Rroxscaffold_1G00060600
rosa_rugosa Rorug05G0030900
rosa_wichuraiana Rw5G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 375
AccB1I GGYRCC 2 cut(s) 139, 375
AciI CCGC 4 cut(s) 88, 137, 168, 354
AclWI GGATC 3 cut(s) 76, 105, 288
AcoI YGGCCR 2 cut(s) 89, 268
AcuI CTGAAG 1 cut(s) 148
AcvI CACGTG 2 cut(s) 266, 286
AcyI GRCGYC 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 243
AfaI GTAC 2 cut(s) 113, 377
AfiI CCNNNNNNNGG 1 cut(s) 277
AflIII ACRYGT 2 cut(s) 129, 237
AjiI CACGTC 3 cut(s) 132, 240, 295
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 3 cut(s) 85, 312, 392
AluI AGCT 3 cut(s) 85, 312, 392
AlwI GGATC 3 cut(s) 76, 105, 288
Ama87I CYCGRG 1 cut(s) 78
AoxI GGCC 4 cut(s) 89, 103, 268, 348
ApeKI GCWGC 1 cut(s) 85
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
Asp700I GAANNNNTTC 1 cut(s) 158
Asp718I GGTACC 1 cut(s) 375
AspLEI GCGC 2 cut(s) 26, 142
AsuC2I CCSGG 2 cut(s) 79, 80
AsuHPI GGTGA 6 cut(s) 55, 61, 67, 163, 313, 319
AvaI CYCGRG 1 cut(s) 78
BanI GGYRCC 2 cut(s) 139, 375
BbrPI CACGTG 2 cut(s) 266, 286
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 72
BccI CCATC 6 cut(s) 40, 46, 52, 58, 199, 298
BceAI ACGGC 3 cut(s) 51, 76, 118
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 2 cut(s) 79, 80
BfoI RGCGCY 1 cut(s) 143
BisI GCNGC 3 cut(s) 86, 89, 138
BlsI GCNGC 3 cut(s) 87, 90, 139
Bme1390I CCNGG 3 cut(s) 79, 80, 107
BmeT110I CYCGRG 1 cut(s) 78
BmgBI CACGTC 3 cut(s) 132, 240, 295
BmiI GGNNCC 2 cut(s) 141, 377
BmrFI CCNGG 3 cut(s) 79, 80, 107
BpiI GAAGAC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 391
BpuMI CCSGG 2 cut(s) 79, 80
BsaAI YACGTR 2 cut(s) 266, 286
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 78, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse118I RCCGGY 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 78, 271
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 34
BseRI GAGGAG 6 cut(s) 161, 186, 189, 192, 201, 204
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 4 cut(s) 91, 105, 270, 350
BshNI GGYRCC 2 cut(s) 139, 375
BsiEI CGRYCG 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 78
BsiSI CCGG 3 cut(s) 79, 119, 143
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 4 cut(s) 91, 105, 270, 350
BsoBI CYCGRG 1 cut(s) 78
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 4 cut(s) 30, 68, 97, 280
BspACI CCGC 4 cut(s) 88, 137, 168, 354
BspANI GGCC 4 cut(s) 91, 105, 270, 350
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 141, 377
BspPI GGATC 3 cut(s) 76, 105, 288
BspT107I GGYRCC 2 cut(s) 139, 375
BsrDI GCAATG 1 cut(s) 209
BsrFI RCCGGY 1 cut(s) 118
BsrGI TGTACA 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 78, 271
BssMI GATC 4 cut(s) 30, 68, 97, 280
BssNI GRCGYC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 409
BstACI GRCGYC 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 111
BstBAI YACGTR 2 cut(s) 266, 286
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 2 cut(s) 26, 142
BstKTI GATC 4 cut(s) 33, 71, 100, 283
BstMBI GATC 4 cut(s) 30, 68, 97, 280
BstMCI CGRYCG 1 cut(s) 92
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 77, 78, 105
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 161
BstZI CGGCCG 1 cut(s) 89
BsuRI GGCC 4 cut(s) 91, 105, 270, 350
BtgZI GCGATG 2 cut(s) 77, 236
BtrI CACGTC 3 cut(s) 132, 240, 295
BtsCI GGATG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 2 cut(s) 26, 142
Cfr10I RCCGGY 1 cut(s) 118
Cfr9I CCCGGG 1 cut(s) 78
Csp6I GTAC 2 cut(s) 112, 376
CviJI RGCY 8 cut(s) 77, 85, 91, 105, 270, 312, 350, 392
CviKI_1 RGCY 8 cut(s) 77, 85, 91, 105, 270, 312, 350, 392
CviQI GTAC 2 cut(s) 112, 376
DdeI CTNAG 1 cut(s) 20
DinI GGCGCC 1 cut(s) 141
DpnI GATC 4 cut(s) 32, 70, 99, 282
DpnII GATC 4 cut(s) 30, 68, 97, 280
DraIII CACNNNGTG 1 cut(s) 243
EaeI YGGCCR 2 cut(s) 89, 268
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
EclXI CGGCCG 1 cut(s) 89
Eco52I CGGCCG 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 148
Eco72I CACGTG 2 cut(s) 266, 286
Eco88I CYCGRG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 105
EgeI GGCGCC 1 cut(s) 141
EheI GGCGCC 1 cut(s) 141
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 305
Fnu4HI GCNGC 3 cut(s) 86, 89, 138
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 3 cut(s) 86, 89, 138
GlaI GCGC 2 cut(s) 25, 141
GluI GCNGC 3 cut(s) 86, 89, 138
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 4 cut(s) 91, 105, 270, 350
HapII CCGG 3 cut(s) 79, 119, 143
HhaI GCGC 2 cut(s) 26, 142
Hin1I GRCGYC 1 cut(s) 140
Hin6I GCGC 2 cut(s) 24, 140
HinP1I GCGC 2 cut(s) 24, 140
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 1 cut(s) 194
HpaII CCGG 3 cut(s) 79, 119, 143
HphI GGTGA 6 cut(s) 55, 61, 67, 163, 313, 319
Hpy166II GTNNAC 2 cut(s) 112, 114
Hpy188I TCNGA 2 cut(s) 73, 97
Hpy188III TCNNGA 3 cut(s) 198, 370, 411
Hpy8I GTNNAC 2 cut(s) 112, 114
Hpy99I CGWCG 2 cut(s) 97, 244
HpyAV CCTTC 1 cut(s) 211
HpyCH4IV ACGT 6 cut(s) 131, 158, 239, 265, 285, 294
HpyCH4V TGCA 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 6 cut(s) 131, 158, 239, 265, 285, 294
Hsp92I GRCGYC 1 cut(s) 140
HspAI GCGC 2 cut(s) 24, 140
KasI GGCGCC 1 cut(s) 139
KpnI GGTACC 1 cut(s) 379
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Kzo9I GATC 4 cut(s) 30, 68, 97, 280
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 7 cut(s) 92, 92, 119, 132, 156, 284, 315
Lsp1109I GCAGC 1 cut(s) 72
MaeII ACGT 6 cut(s) 131, 158, 239, 265, 285, 294
MalI GATC 4 cut(s) 32, 70, 99, 282
MboI GATC 4 cut(s) 30, 68, 97, 280
MboII GAAGA 4 cut(s) 154, 166, 396, 399
Mly113I GGCGCC 1 cut(s) 140
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 75
MreI CGCCGGCG 1 cut(s) 118
MroNI GCCGGC 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 3 cut(s) 79, 119, 143
MspR9I CCNGG 3 cut(s) 79, 80, 107
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 1 cut(s) 107
NaeI GCCGGC 1 cut(s) 120
NarI GGCGCC 1 cut(s) 140
NciI CCSGG 2 cut(s) 79, 80
NdeII GATC 4 cut(s) 30, 68, 97, 280
NgoMIV GCCGGC 1 cut(s) 118
NlaIV GGNNCC 2 cut(s) 141, 377
NmeAIII GCCGAG 1 cut(s) 296
PcsI WCGNNNNNNNCGW 3 cut(s) 35, 236, 291
PctI GAATGC 1 cut(s) 265
PdiI GCCGGC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 87, 90, 139
PleI GAGTC 1 cut(s) 202
PluTI GGCGCC 1 cut(s) 143
PmaCI CACGTG 2 cut(s) 266, 286
PmlI CACGTG 2 cut(s) 266, 286
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 2 cut(s) 266, 286
Psp6I CCWGG 1 cut(s) 105
PspCI CACGTG 2 cut(s) 266, 286
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 141, 377
RsaI GTAC 2 cut(s) 113, 377
RsaNI GTAC 2 cut(s) 112, 376
SatI GCNGC 3 cut(s) 86, 89, 138
Sau3AI GATC 4 cut(s) 30, 68, 97, 280
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 3 cut(s) 79, 80, 107
SfoI GGCGCC 1 cut(s) 141
SgrAI CRCCGGYG 1 cut(s) 118
SmaI CCCGGG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
SsiI CCGC 4 cut(s) 88, 137, 168, 354
SspDI GGCGCC 1 cut(s) 139
StyD4I CCNGG 3 cut(s) 77, 78, 105
TaiI ACGT 6 cut(s) 134, 161, 242, 268, 288, 297
TaqI TCGA 1 cut(s) 230
TatI WGTACW 1 cut(s) 111
TauI GCSGC 2 cut(s) 91, 140
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 239, 384
TspMI CCCGGG 1 cut(s) 78
XmaI CCCGGG 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.