Rw5G010770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016687
Physical Location & Seq
Reverse (-)
11801062 .. 11802037
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G010770.1

Sequence Viewer

Length: 438 bp
ATGAAGAGAGAGATGGGGGGTTCAGTAAAACTCAGCGCAACGATCACGGCGTTGGTGATGGTGATGGTGATGGTGATGGCGATGGGATCGGAAGCCCGGGAGCTGCGGCCTTCCGATCACGGCCTGGTGTACACGCCGGCGGGGAACACGTCGGCGGCGCCGGAGGAGGCGAAGTCGTTCTTCAGCGGAGGAGGAGGAGGAGGGGGAGGGGGAGGAGAGTCGGGAGGGGTGGCATTGCCGAAGGCGATGAACTCGAACGACACGTCGTGGTGGGAGGGAGTGAACGCACGTGGGCGGGGGAGGGATCACGTGAGGGACGTGCTGGTTGTGGTGAGCTTGATTTGTGGGATTACAGGTGTCGTTCTCTTTGTGGCCTCCGCTTTTGTTTATCTCTTGAGGTACCGAAAGCGCAAAGCTTCATCTCTTCCTTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.05

Weight (kDa)

9.72

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30515 AT4G21740
fragaria_vesca FvH4_3g10110 FvH4_3g10110
malus_domestica MD05G1272900.v1.1 MD10G1253000.v1.1
prunus_persica Prupe.4G090500_v2.0.a1
pyrus_communis pycom10g20870
rosa_chinensis RchiOBHm_Chr5g0016051
rosa_laevigata RLG00000032237
rosa_multiflora Rmu_sc0000299.1_g000015
rosa_roxburghii Rroxscaffold_1G00060600
rosa_rugosa Rorug05G0030900
rosa_wichuraiana Rw5G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 399
AccB1I GGYRCC 2 cut(s) 157, 399
AciI CCGC 6 cut(s) 106, 140, 155, 186, 295, 378
AclWI GGATC 2 cut(s) 94, 312
AcuI CTGAAG 1 cut(s) 166
AcvI CACGTG 2 cut(s) 290, 310
AcyI GRCGYC 1 cut(s) 158
AdeI CACNNNGTG 1 cut(s) 267
AfaI GTAC 2 cut(s) 131, 401
AflIII ACRYGT 2 cut(s) 147, 261
AjiI CACGTC 3 cut(s) 150, 264, 319
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 3 cut(s) 103, 336, 416
AluI AGCT 3 cut(s) 103, 336, 416
AlwI GGATC 2 cut(s) 94, 312
Ama87I CYCGRG 1 cut(s) 96
AoxI GGCC 3 cut(s) 107, 121, 372
ApeKI GCWGC 1 cut(s) 103
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
Asp700I GAANNNNTTC 1 cut(s) 176
Asp718I GGTACC 1 cut(s) 399
AspLEI GCGC 3 cut(s) 38, 160, 411
AsuC2I CCSGG 2 cut(s) 97, 98
AsuHPI GGTGA 5 cut(s) 67, 73, 79, 85, 343
AvaI CYCGRG 1 cut(s) 96
BanI GGYRCC 2 cut(s) 157, 399
BbrPI CACGTG 2 cut(s) 290, 310
BbvI GCAGC 1 cut(s) 90
BccI CCATC 6 cut(s) 7, 52, 58, 64, 70, 76
BceAI ACGGC 2 cut(s) 63, 136
BciT130I CCWGG 1 cut(s) 125
BcnI CCSGG 2 cut(s) 97, 98
BfoI RGCGCY 1 cut(s) 161
BisI GCNGC 3 cut(s) 104, 107, 156
BlsI GCNGC 3 cut(s) 105, 108, 157
Bme1390I CCNGG 3 cut(s) 97, 98, 125
BmeT110I CYCGRG 1 cut(s) 96
BmgBI CACGTC 3 cut(s) 150, 264, 319
BmiI GGNNCC 2 cut(s) 159, 401
BmrFI CCNGG 3 cut(s) 97, 98, 125
BpuEI CTTGAG 1 cut(s) 415
BpuMI CCSGG 2 cut(s) 97, 98
BsaAI YACGTR 2 cut(s) 290, 310
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bse118I RCCGGY 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 46
BseRI GAGGAG 6 cut(s) 179, 204, 207, 210, 213, 228
BseXI GCAGC 1 cut(s) 90
BshFI GGCC 3 cut(s) 109, 123, 374
BshNI GGYRCC 2 cut(s) 157, 399
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 3 cut(s) 97, 137, 161
BslFI GGGAC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 3 cut(s) 109, 123, 374
BsoBI CYCGRG 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 4 cut(s) 42, 86, 115, 304
BspACI CCGC 6 cut(s) 106, 140, 155, 186, 295, 378
BspANI GGCC 3 cut(s) 109, 123, 374
BspCNI CTCAG 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 159, 401
BspPI GGATC 2 cut(s) 94, 312
BspT107I GGYRCC 2 cut(s) 157, 399
BsrDI GCAATG 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 4 cut(s) 42, 86, 115, 304
BssNI GRCGYC 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 429
BstACI GRCGYC 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 129
BstBAI YACGTR 2 cut(s) 290, 310
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 3 cut(s) 38, 160, 411
BstKTI GATC 4 cut(s) 45, 89, 118, 307
BstMBI GATC 4 cut(s) 42, 86, 115, 304
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 95, 96, 123
BstV1I GCAGC 1 cut(s) 90
BsuRI GGCC 3 cut(s) 109, 123, 374
BtgZI GCGATG 2 cut(s) 95, 260
BtrI CACGTC 3 cut(s) 150, 264, 319
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 3 cut(s) 38, 160, 411
Cfr10I RCCGGY 1 cut(s) 136
Cfr9I CCCGGG 1 cut(s) 96
Csp6I GTAC 2 cut(s) 130, 400
CviJI RGCY 7 cut(s) 95, 103, 109, 123, 336, 374, 416
CviKI_1 RGCY 7 cut(s) 95, 103, 109, 123, 336, 374, 416
CviQI GTAC 2 cut(s) 130, 400
DdeI CTNAG 1 cut(s) 32
DinI GGCGCC 1 cut(s) 159
DpnI GATC 4 cut(s) 44, 88, 117, 306
DpnII GATC 4 cut(s) 42, 86, 115, 304
DraIII CACNNNGTG 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 166
Eco72I CACGTG 2 cut(s) 290, 310
Eco88I CYCGRG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 123
EgeI GGCGCC 1 cut(s) 159
EheI GGCGCC 1 cut(s) 159
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 1 cut(s) 329
FauI CCCGC 2 cut(s) 133, 288
Fnu4HI GCNGC 3 cut(s) 104, 107, 156
Fsp4HI GCNGC 3 cut(s) 104, 107, 156
GlaI GCGC 3 cut(s) 37, 159, 410
GluI GCNGC 3 cut(s) 104, 107, 156
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 3 cut(s) 109, 123, 374
HapII CCGG 3 cut(s) 97, 137, 161
HhaI GCGC 3 cut(s) 38, 160, 411
Hin1I GRCGYC 1 cut(s) 158
Hin6I GCGC 3 cut(s) 36, 158, 409
HinP1I GCGC 3 cut(s) 36, 158, 409
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 1 cut(s) 218
HpaII CCGG 3 cut(s) 97, 137, 161
HphI GGTGA 5 cut(s) 67, 73, 79, 85, 343
Hpy166II GTNNAC 3 cut(s) 130, 132, 283
Hpy188I TCNGA 2 cut(s) 91, 115
Hpy188III TCNNGA 3 cut(s) 222, 394, 435
Hpy8I GTNNAC 3 cut(s) 130, 132, 283
Hpy99I CGWCG 2 cut(s) 154, 268
HpyAV CCTTC 3 cut(s) 120, 235, 438
HpyCH4IV ACGT 5 cut(s) 149, 263, 289, 309, 318
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 5 cut(s) 149, 263, 289, 309, 318
Hsp92I GRCGYC 1 cut(s) 158
HspAI GCGC 3 cut(s) 36, 158, 409
KasI GGCGCC 1 cut(s) 157
KpnI GGTACC 1 cut(s) 403
KroI GCCGGC 1 cut(s) 136
KroNI GCCGGC 1 cut(s) 138
Kzo9I GATC 4 cut(s) 42, 86, 115, 304
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 110, 110, 137, 150, 174, 308, 339
Lsp1109I GCAGC 1 cut(s) 90
MaeII ACGT 5 cut(s) 149, 263, 289, 309, 318
MalI GATC 4 cut(s) 44, 88, 117, 306
MboI GATC 4 cut(s) 42, 86, 115, 304
MboII GAAGA 4 cut(s) 16, 172, 416, 423
Mly113I GGCGCC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 227
MreI CGCCGGCG 1 cut(s) 136
MroNI GCCGGC 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 3 cut(s) 97, 137, 161
MspR9I CCNGG 3 cut(s) 97, 98, 125
MvaI CCWGG 1 cut(s) 125
NaeI GCCGGC 1 cut(s) 138
NarI GGCGCC 1 cut(s) 158
NciI CCSGG 2 cut(s) 97, 98
NdeII GATC 4 cut(s) 42, 86, 115, 304
NgoMIV GCCGGC 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 159, 401
PcsI WCGNNNNNNNCGW 3 cut(s) 47, 260, 315
PdiI GCCGGC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 176
PkrI GCNGC 3 cut(s) 105, 108, 157
PleI GAGTC 1 cut(s) 226
PluTI GGCGCC 1 cut(s) 161
PmaCI CACGTG 2 cut(s) 290, 310
PmlI CACGTG 2 cut(s) 290, 310
PpsI GAGTC 1 cut(s) 226
Ppu21I YACGTR 2 cut(s) 290, 310
Psp6I CCWGG 1 cut(s) 123
PspCI CACGTG 2 cut(s) 290, 310
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 159, 401
RsaI GTAC 2 cut(s) 131, 401
RsaNI GTAC 2 cut(s) 130, 400
SatI GCNGC 3 cut(s) 104, 107, 156
Sau3AI GATC 4 cut(s) 42, 86, 115, 304
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 3 cut(s) 97, 98, 125
SfoI GGCGCC 1 cut(s) 159
SgrAI CRCCGGYG 1 cut(s) 136
SmaI CCCGGG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SsiI CCGC 6 cut(s) 106, 140, 155, 186, 295, 378
SspDI GGCGCC 1 cut(s) 157
StyD4I CCNGG 3 cut(s) 95, 96, 123
TaiI ACGT 5 cut(s) 152, 266, 292, 312, 321
TaqI TCGA 1 cut(s) 254
TatI WGTACW 1 cut(s) 129
TauI GCSGC 2 cut(s) 109, 158
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 17, 263, 408
TspMI CCCGGG 1 cut(s) 96
XmaI CCCGGG 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.