Prupe.4G090500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016687
Physical Location & Seq
Reverse (-)
4513720 .. 4515411
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G090500.1

Sequence Viewer

Length: 423 bp
ATGGTGCTTCGCATGGAAATCGGGGGAGCGATCGTAGTGTTTCTGATGGCGGTGGCGATGGAATCGGAAGGTCGAGAGCTGCGGCCGTCGGATCACGGACTCCTATACCAGGGCTCGCCGCCGGCGAGCGCGAAGTCTCCGACGGAAGTGAAGTCTTTCTTCGTCGGGGGAGGAGGAGGAGGCGGAGGTGGGGGAGAAAATTCGCCGACGGCATTGCCGAAGGCGATGAACTCGAGCGACTCGTCGTGGTGGAACGGCGTCGTCGCACGTGGCGGCGGCCACAGAGATCACGTGAAGGATGTGCTGTTGCTGGCCAGTTTGGTTTGTGGGATTACAGGTGTCGCTCTGTTTGTGGCGTCTGCCTTTGTGTATCTGTTAAGGAACCGAAAGCATAAATCATTACCATCATCAGCGTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

14.43

Weight (kDa)

9.3

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30515 AT4G21740
fragaria_vesca FvH4_3g10110 FvH4_3g10110
malus_domestica MD05G1272900.v1.1 MD10G1253000.v1.1
prunus_persica Prupe.4G090500_v2.0.a1
pyrus_communis pycom10g20870
rosa_chinensis RchiOBHm_Chr5g0016051
rosa_laevigata RLG00000032237
rosa_multiflora Rmu_sc0000299.1_g000015
rosa_roxburghii Rroxscaffold_1G00060600
rosa_rugosa Rorug05G0030900
rosa_wichuraiana Rw5G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AciI CCGC 6 cut(s) 50, 82, 119, 183, 273, 276
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 3 cut(s) 83, 277, 312
AcsI RAATTY 1 cut(s) 199
AcvI CACGTG 2 cut(s) 269, 292
AcyI GRCGYC 2 cut(s) 258, 356
AfiI CCNNNNNNNGG 1 cut(s) 109
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 3 cut(s) 83, 277, 312
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 199
Asp700I GAANNNNTTC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 232
BalI TGGCCA 1 cut(s) 314
BanII GRGCYC 1 cut(s) 116
BbrPI CACGTG 2 cut(s) 269, 292
BbvI GCAGC 1 cut(s) 66
BccI CCATC 3 cut(s) 40, 52, 412
BceAI ACGGC 3 cut(s) 70, 225, 271
BcgI CGANNNNNNTGC 3 cut(s) 35, 196, 230
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 141
BisI GCNGC 5 cut(s) 80, 83, 119, 274, 277
BlsI GCNGC 5 cut(s) 81, 84, 120, 275, 278
Bme1390I CCNGG 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 1 cut(s) 110
BsaAI YACGTR 2 cut(s) 269, 292
BsaHI GRCGYC 2 cut(s) 258, 356
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 315
Bse3DI GCAATG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 3 cut(s) 186, 189, 192
BseX3I CGGCCG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 131
Bsh1285I CGRYCG 2 cut(s) 33, 86
BshFI GGCC 3 cut(s) 85, 279, 314
BsiEI CGRYCG 2 cut(s) 33, 86
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 3 cut(s) 85, 279, 314
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 3 cut(s) 30, 91, 286
BspACI CCGC 6 cut(s) 50, 82, 119, 183, 273, 276
BspANI GGCC 3 cut(s) 85, 279, 314
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 419
BspLI GGNNCC 1 cut(s) 383
BspPI GGATC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 3 cut(s) 30, 91, 286
BssNI GRCGYC 2 cut(s) 258, 356
Bst2UI CCWGG 1 cut(s) 110
BstACI GRCGYC 2 cut(s) 258, 356
BstBAI YACGTR 2 cut(s) 269, 292
BstC8I GCNNGC 4 cut(s) 116, 123, 127, 312
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 3 cut(s) 33, 94, 289
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 3 cut(s) 30, 91, 286
BstMCI CGRYCG 2 cut(s) 33, 86
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 66
BstZI CGGCCG 1 cut(s) 83
BsuRI GGCC 3 cut(s) 85, 279, 314
BtgZI GCGATG 2 cut(s) 71, 239
BtsCI GGATG 1 cut(s) 304
Cac8I GCNNGC 4 cut(s) 116, 123, 127, 312
CciI TCATGA 1 cut(s) 419
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 121
CseI GACGC 3 cut(s) 247, 345, 402
CviAII CATG 2 cut(s) 13, 420
CviJI RGCY 5 cut(s) 79, 85, 114, 279, 314
CviKI_1 RGCY 5 cut(s) 79, 85, 114, 279, 314
DpnI GATC 3 cut(s) 32, 93, 288
DpnII GATC 3 cut(s) 30, 91, 286
EaeI YGGCCR 3 cut(s) 83, 277, 312
EagI CGGCCG 1 cut(s) 83
EciI GGCGGA 1 cut(s) 198
EclXI CGGCCG 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 116
Eco52I CGGCCG 1 cut(s) 83
Eco72I CACGTG 2 cut(s) 269, 292
Eco88I CYCGRG 1 cut(s) 232
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 116
FaeI CATG 2 cut(s) 16, 423
FaiI YATR 4 cut(s) 14, 106, 393, 421
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 2 cut(s) 12, 419
Fnu4HI GCNGC 5 cut(s) 80, 83, 119, 274, 277
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 5 cut(s) 80, 83, 119, 274, 277
GlaI GCGC 1 cut(s) 130
GluI GCNGC 5 cut(s) 80, 83, 119, 274, 277
HaeIII GGCC 3 cut(s) 85, 279, 314
HapII CCGG 1 cut(s) 122
HgaI GACGC 3 cut(s) 247, 345, 402
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 2 cut(s) 258, 356
Hin1II CATG 2 cut(s) 16, 423
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 3 cut(s) 62, 99, 239
HpaII CCGG 1 cut(s) 122
Hpy188I TCNGA 4 cut(s) 45, 67, 91, 141
Hpy188III TCNNGA 2 cut(s) 74, 420
Hpy99I CGWCG 7 cut(s) 91, 145, 167, 211, 247, 263, 266
HpyAV CCTTC 3 cut(s) 62, 214, 289
HpyCH4IV ACGT 2 cut(s) 268, 291
HpySE526I ACGT 2 cut(s) 268, 291
Hsp92I GRCGYC 2 cut(s) 258, 356
Hsp92II CATG 2 cut(s) 16, 423
HspAI GCGC 1 cut(s) 129
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
Kzo9I GATC 3 cut(s) 30, 91, 286
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 6 cut(s) 95, 122, 135, 296, 321, 328
Lsp1109I GCAGC 1 cut(s) 66
MaeII ACGT 2 cut(s) 268, 291
MalI GATC 3 cut(s) 32, 93, 288
MboI GATC 3 cut(s) 30, 91, 286
MboII GAAGA 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 1 cut(s) 199
MluNI TGGCCA 1 cut(s) 314
MlyI GAGTC 2 cut(s) 93, 233
MmeI TCCRAC 2 cut(s) 69, 164
MnlI CCTC 5 cut(s) 164, 167, 170, 173, 179
Mox20I TGGCCA 1 cut(s) 314
MreI CGCCGGCG 1 cut(s) 121
MroNI GCCGGC 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 314
MseI TTAA 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 314
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 131
NaeI GCCGGC 1 cut(s) 123
NdeII GATC 3 cut(s) 30, 91, 286
NgoMIV GCCGGC 1 cut(s) 121
NlaIII CATG 2 cut(s) 16, 423
NlaIV GGNNCC 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 232
PagI TCATGA 1 cut(s) 419
PcsI WCGNNNNNNNCGW 3 cut(s) 122, 215, 239
PdiI GCCGGC 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 5 cut(s) 81, 84, 120, 275, 278
Ple19I CGATCG 1 cut(s) 33
PleI GAGTC 2 cut(s) 93, 233
PmaCI CACGTG 2 cut(s) 269, 292
PmlI CACGTG 2 cut(s) 269, 292
PpsI GAGTC 2 cut(s) 93, 233
Ppu21I YACGTR 2 cut(s) 269, 292
Psp6I CCWGG 1 cut(s) 108
PspCI CACGTG 2 cut(s) 269, 292
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 383
PspXI VCTCGAGB 1 cut(s) 232
PvuI CGATCG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 5 cut(s) 80, 83, 119, 274, 277
Sau3AI GATC 3 cut(s) 30, 91, 286
SchI GAGTC 2 cut(s) 93, 233
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 116
SetI ASST 6 cut(s) 73, 81, 190, 271, 294, 340
Sfr274I CTCGAG 1 cut(s) 232
SgrAI CRCCGGYG 1 cut(s) 121
SlaI CTCGAG 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 1 cut(s) 199
SsiI CCGC 6 cut(s) 50, 82, 119, 183, 273, 276
StyD4I CCNGG 1 cut(s) 108
TaiI ACGT 2 cut(s) 271, 294
TaqI TCGA 2 cut(s) 73, 233
TasI AATT 1 cut(s) 199
TauI GCSGC 4 cut(s) 85, 121, 276, 279
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 2 cut(s) 111, 158
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.