RchiOBHm_Chr5g0016051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016687
Physical Location & Seq
Reverse (-)
11108572 .. 11109595
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29645

Sequence Viewer

Length: 441 bp
ATGAAGAGAGAGATGGGGGGTTCAGTAAAACTCAGCGCAACGATCACGGCGTTGGTGATGGTGATGGTGATGGCGATGGGATCGGAAGCCCGGGAGCTGCGGCCTTCCGATCACGGCCTGGTGTACACGCCGGCGGGGAACACGTCGGCGGCGCCGGAGGAGGCGAAGTCGTTCTTCAGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGAGTCGGGAGGGGTGGCATTGCCGAAGGCGATGAACTCGAACGACACGTCGTGGTGGGAGGGAGTGAACGCACGTGGGCGGGGGAGGGATCACGTGAGGGACGTGCTGGTTGTGGTGAGCTTGATTTGTGGGATTACAGGTGTCGTTCTCTTTGTGGCCTCCGCTTTTGTTTATCTCTTGAGGTACCGAAAGCGCAAAGCTTCATCCCTTCCTTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

14.99

Weight (kDa)

9.72

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016687)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30515 AT4G21740
fragaria_vesca FvH4_3g10110 FvH4_3g10110
malus_domestica MD05G1272900.v1.1 MD10G1253000.v1.1
prunus_persica Prupe.4G090500_v2.0.a1
pyrus_communis pycom10g20870
rosa_chinensis RchiOBHm_Chr5g0016051
rosa_laevigata RLG00000032237
rosa_multiflora Rmu_sc0000299.1_g000015
rosa_roxburghii Rroxscaffold_1G00060600
rosa_rugosa Rorug05G0030900
rosa_wichuraiana Rw5G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 402
AccB1I GGYRCC 2 cut(s) 151, 402
AciI CCGC 6 cut(s) 100, 134, 149, 180, 298, 381
AclWI GGATC 2 cut(s) 88, 315
AcuI CTGAAG 1 cut(s) 160
AcvI CACGTG 2 cut(s) 293, 313
AcyI GRCGYC 1 cut(s) 152
AdeI CACNNNGTG 1 cut(s) 270
AfaI GTAC 2 cut(s) 125, 404
AflIII ACRYGT 2 cut(s) 141, 264
AjiI CACGTC 3 cut(s) 144, 267, 322
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 3 cut(s) 97, 339, 419
AluI AGCT 3 cut(s) 97, 339, 419
AlwI GGATC 2 cut(s) 88, 315
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 3 cut(s) 101, 115, 375
ApeKI GCWGC 1 cut(s) 97
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
Asp700I GAANNNNTTC 1 cut(s) 170
Asp718I GGTACC 1 cut(s) 402
AspLEI GCGC 3 cut(s) 38, 154, 414
AsuC2I CCSGG 2 cut(s) 91, 92
AsuHPI GGTGA 4 cut(s) 67, 73, 79, 346
AvaI CYCGRG 1 cut(s) 90
BanI GGYRCC 2 cut(s) 151, 402
BbrPI CACGTG 2 cut(s) 293, 313
BbvI GCAGC 1 cut(s) 84
BccI CCATC 5 cut(s) 7, 52, 58, 64, 70
BceAI ACGGC 2 cut(s) 63, 130
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 2 cut(s) 91, 92
BfoI RGCGCY 1 cut(s) 155
BisI GCNGC 3 cut(s) 98, 101, 150
BlsI GCNGC 3 cut(s) 99, 102, 151
Bme1390I CCNGG 3 cut(s) 91, 92, 119
BmeT110I CYCGRG 1 cut(s) 90
BmgBI CACGTC 3 cut(s) 144, 267, 322
BmiI GGNNCC 2 cut(s) 153, 404
BmrFI CCNGG 3 cut(s) 91, 92, 119
BpuEI CTTGAG 1 cut(s) 418
BpuMI CCSGG 2 cut(s) 91, 92
BsaAI YACGTR 2 cut(s) 293, 313
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bse118I RCCGGY 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 84
BshFI GGCC 3 cut(s) 103, 117, 377
BshNI GGYRCC 2 cut(s) 151, 402
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 3 cut(s) 91, 131, 155
BslFI GGGAC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 3 cut(s) 103, 117, 377
BsoBI CYCGRG 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 123
Bsp143I GATC 4 cut(s) 42, 80, 109, 307
BspACI CCGC 6 cut(s) 100, 134, 149, 180, 298, 381
BspANI GGCC 3 cut(s) 103, 117, 377
BspCNI CTCAG 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 153, 404
BspPI GGATC 2 cut(s) 88, 315
BspT107I GGYRCC 2 cut(s) 151, 402
BsrDI GCAATG 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 4 cut(s) 42, 80, 109, 307
BssNI GRCGYC 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 123
BstBAI YACGTR 2 cut(s) 293, 313
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 422
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 3 cut(s) 38, 154, 414
BstKTI GATC 4 cut(s) 45, 83, 112, 310
BstMBI GATC 4 cut(s) 42, 80, 109, 307
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 3 cut(s) 89, 90, 117
BstV1I GCAGC 1 cut(s) 84
BsuRI GGCC 3 cut(s) 103, 117, 377
BtgZI GCGATG 2 cut(s) 89, 263
BtrI CACGTC 3 cut(s) 144, 267, 322
BtsCI GGATG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 3 cut(s) 38, 154, 414
Cfr10I RCCGGY 1 cut(s) 130
Cfr9I CCCGGG 1 cut(s) 90
Csp6I GTAC 2 cut(s) 124, 403
CviJI RGCY 7 cut(s) 89, 97, 103, 117, 339, 377, 419
CviKI_1 RGCY 7 cut(s) 89, 97, 103, 117, 339, 377, 419
CviQI GTAC 2 cut(s) 124, 403
DdeI CTNAG 1 cut(s) 32
DinI GGCGCC 1 cut(s) 153
DpnI GATC 4 cut(s) 44, 82, 111, 309
DpnII GATC 4 cut(s) 42, 80, 109, 307
DraIII CACNNNGTG 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 160
Eco72I CACGTG 2 cut(s) 293, 313
Eco88I CYCGRG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 117
EgeI GGCGCC 1 cut(s) 153
EheI GGCGCC 1 cut(s) 153
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 1 cut(s) 332
FauI CCCGC 2 cut(s) 127, 291
Fnu4HI GCNGC 3 cut(s) 98, 101, 150
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 3 cut(s) 98, 101, 150
GlaI GCGC 3 cut(s) 37, 153, 413
GluI GCNGC 3 cut(s) 98, 101, 150
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 3 cut(s) 103, 117, 377
HapII CCGG 3 cut(s) 91, 131, 155
HhaI GCGC 3 cut(s) 38, 154, 414
Hin1I GRCGYC 1 cut(s) 152
Hin6I GCGC 3 cut(s) 36, 152, 412
HinP1I GCGC 3 cut(s) 36, 152, 412
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 1 cut(s) 221
HpaII CCGG 3 cut(s) 91, 131, 155
HphI GGTGA 4 cut(s) 67, 73, 79, 346
Hpy166II GTNNAC 3 cut(s) 124, 126, 286
Hpy188I TCNGA 2 cut(s) 85, 109
Hpy188III TCNNGA 3 cut(s) 225, 397, 438
Hpy8I GTNNAC 3 cut(s) 124, 126, 286
Hpy99I CGWCG 2 cut(s) 148, 271
HpyAV CCTTC 4 cut(s) 114, 238, 437, 441
HpyCH4IV ACGT 5 cut(s) 143, 266, 292, 312, 321
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 5 cut(s) 143, 266, 292, 312, 321
Hsp92I GRCGYC 1 cut(s) 152
HspAI GCGC 3 cut(s) 36, 152, 412
KasI GGCGCC 1 cut(s) 151
KpnI GGTACC 1 cut(s) 406
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Kzo9I GATC 4 cut(s) 42, 80, 109, 307
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 7 cut(s) 104, 104, 131, 144, 168, 311, 342
Lsp1109I GCAGC 1 cut(s) 84
MaeII ACGT 5 cut(s) 143, 266, 292, 312, 321
MalI GATC 4 cut(s) 44, 82, 111, 309
MboI GATC 4 cut(s) 42, 80, 109, 307
MboII GAAGA 3 cut(s) 16, 166, 426
Mly113I GGCGCC 1 cut(s) 152
MlyI GAGTC 1 cut(s) 230
MreI CGCCGGCG 1 cut(s) 130
MroNI GCCGGC 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 180
MspI CCGG 3 cut(s) 91, 131, 155
MspR9I CCNGG 3 cut(s) 91, 92, 119
MvaI CCWGG 1 cut(s) 119
NaeI GCCGGC 1 cut(s) 132
NarI GGCGCC 1 cut(s) 152
NciI CCSGG 2 cut(s) 91, 92
NdeII GATC 4 cut(s) 42, 80, 109, 307
NgoMIV GCCGGC 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 153, 404
PcsI WCGNNNNNNNCGW 3 cut(s) 47, 263, 318
PdiI GCCGGC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 170
PkrI GCNGC 3 cut(s) 99, 102, 151
PleI GAGTC 1 cut(s) 229
PluTI GGCGCC 1 cut(s) 155
PmaCI CACGTG 2 cut(s) 293, 313
PmlI CACGTG 2 cut(s) 293, 313
PpsI GAGTC 1 cut(s) 229
Ppu21I YACGTR 2 cut(s) 293, 313
Psp6I CCWGG 1 cut(s) 117
PspCI CACGTG 2 cut(s) 293, 313
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 153, 404
RsaI GTAC 2 cut(s) 125, 404
RsaNI GTAC 2 cut(s) 124, 403
SatI GCNGC 3 cut(s) 98, 101, 150
Sau3AI GATC 4 cut(s) 42, 80, 109, 307
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 91, 92, 119
SfoI GGCGCC 1 cut(s) 153
SgrAI CRCCGGYG 1 cut(s) 130
SmaI CCCGGG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
SsiI CCGC 6 cut(s) 100, 134, 149, 180, 298, 381
SspDI GGCGCC 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 89, 90, 117
TaiI ACGT 5 cut(s) 146, 269, 295, 315, 324
TaqI TCGA 1 cut(s) 257
TatI WGTACW 1 cut(s) 123
TauI GCSGC 2 cut(s) 103, 152
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 17, 266, 411
TspMI CCCGGG 1 cut(s) 90
XmaI CCCGGG 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.