Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Reverse (-)

11787299 .. 11789312

Gene Structure 2014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCGAACAAGTAGACTGAAGAAGCCGATTGTTCTTCTCACTATCGCACTATTGAGCTCTGTCTTCTTCTTCGCATTCTTCTTCCTAAACAAATCTGACGTATCATCTACCTCTGCTTTACGGAACCGAGACTCCATGGCTCGAACCTTCATCTTATGGCTTCACGGGCTAGGTGATTCCGGACCTGCCAACGAACCCATCAAAACACTTTTCAGGTCCCAGGAGTTTAGAAACACTAAGTGGCTCTTCCCTTCTGCTCCACCAAATCCAGTCTCTTGCAATTATGGTGCAGTGATGCCTTCTTGGTTTGACATCCCTGAGCTTCCTCTTACTGCGGGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTAAGAACGTTCATGCCATTATAGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTGTATATCTGTGGATTTAGCCAAGGAGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCTAAAACTATTGGAGGAGGTGCAGTCTTTAGCGGATGGATTCCATTCAATTCTTCGATCACCAATCAGTTTACCGAAGATGCTAAAAAGACACCAATCTTGTGGTCTCATGGCATTGATGACAAGACTGTACTATTCGAAGCTGGTCAAGCAGCTCTTCCTTTTCTTCAACAAGCGGGTGTGACTTGTGAATTCAAGGCTTATCCGGGTCTTGGACACTCAATCAGTAATGAGGAGCTGCAGTATCTGGAGTCATGGTTAAAACAACGGATGCAGAGCTCTTCTTCTTCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0030163 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0071944 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

262

Amino Acids

28.7

Weight (kDa)

8.38

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	42 - 252	2e-49	Phospholipase/Carboxylesterase
DLH	PF01738	139 - 244	2.2e-08	Dienelactone hydrolase family
Peptidase_S9	PF00326	191 - 253	8.4e-06	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	13
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	3 cut(s)	335, 525, 668
AclI	AACGTT	1 cut(s)	381
AclWI	GGATC	1 cut(s)	346
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	1 cut(s)	38
AdeI	CACNNNGTG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	3 cut(s)	541, 662, 688
AjnI	CCWGG	1 cut(s)	219
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AluBI	AGCT	6 cut(s)	57, 322, 635, 647, 730, 771
AluI	AGCT	6 cut(s)	57, 322, 635, 647, 730, 771
Alw21I	GWGCWC	2 cut(s)	59, 773
Alw26I	GTCTC	3 cut(s)	123, 277, 603
AlwI	GGATC	1 cut(s)	346
AlwNI	CAGNNNCTG	1 cut(s)	739
Aor13HI	TCCGGA	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	644, 730
ApoI	RAATTY	1 cut(s)	683
AspS9I	GGNCC	2 cut(s)	182, 216
AsuC2I	CCSGG	1 cut(s)	699
AsuHPI	GGTGA	2 cut(s)	185, 544
AsuII	TTCGAA	1 cut(s)	630
AvaII	GGWCC	2 cut(s)	182, 216
BanII	GRGCYC	2 cut(s)	59, 773
BbsI	GAAGAC	1 cut(s)	55
Bbv12I	GWGCWC	2 cut(s)	59, 773
BbvI	GCAGC	2 cut(s)	656, 717
BccI	CCATC	2 cut(s)	206, 522
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	699
BcoDI	GTCTC	3 cut(s)	123, 277, 603
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	731
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	645, 731
BlsI	GCNGC	2 cut(s)	646, 732
Bme1390I	CCNGG	2 cut(s)	221, 699
Bme18I	GGWCC	2 cut(s)	182, 216
BmgT120I	GGNCC	2 cut(s)	182, 216
BmiI	GGNNCC	2 cut(s)	125, 218
BmrFI	CCNGG	2 cut(s)	221, 699
BmsI	GCATC	3 cut(s)	285, 562, 753
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	761
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	603
BsaJI	CCNNGG	4 cut(s)	135, 219, 454, 471
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	8 cut(s)	116, 146, 501, 531, 719, 734, 749, 764
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse1I	ACTGG	1 cut(s)	269
BseAI	TCCGGA	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	4 cut(s)	135, 219, 454, 471
BseGI	GGATG	3 cut(s)	312, 533, 768
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	522, 740
BseXI	GCAGC	2 cut(s)	656, 717
BsgI	GTGCAG	2 cut(s)	309, 534
BsiHKAI	GWGCWC	2 cut(s)	59, 773
BsiSI	CCGG	2 cut(s)	180, 698
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	3 cut(s)	123, 277, 603
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	603
Bsp119I	TTCGAA	1 cut(s)	630
Bsp1286I	GDGCHC	2 cut(s)	59, 773
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	338, 549
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	335, 525, 668
BspCNI	CTCAG	1 cut(s)	310
BspEI	TCCGGA	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	125, 218
BspMAI	CTGCAG	1 cut(s)	735
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	346
BspQI	GCTCTTC	3 cut(s)	251, 654, 778
BspT104I	TTCGAA	1 cut(s)	630
BspTNI	GGTCTC	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	135, 219, 454, 471
BssMI	GATC	2 cut(s)	338, 549
BssT1I	CCWWGG	3 cut(s)	135, 454, 471
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	622
Bst6I	CTCTTC	3 cut(s)	251, 654, 778
BstBI	TTCGAA	1 cut(s)	630
BstDEI	CTNAG	2 cut(s)	237, 318
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	312, 533, 768
BstKTI	GATC	2 cut(s)	341, 552
BstMAI	GTCTC	3 cut(s)	123, 277, 603
BstMBI	GATC	2 cut(s)	338, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 641
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	219, 697
BstSFI	CTRYAG	1 cut(s)	731
BstV1I	GCAGC	2 cut(s)	656, 717
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	594
BstYI	RGATCY	1 cut(s)	338
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	312, 533, 768
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	739
Cfr13I	GGNCC	2 cut(s)	182, 216
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	4 cut(s)	136, 386, 602, 747
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	2 cut(s)	237, 318
DpnI	GATC	2 cut(s)	340, 551
DpnII	GATC	2 cut(s)	338, 549
DraIII	CACNNNGTG	1 cut(s)	240
Eam1104I	CTCTTC	3 cut(s)	251, 654, 778
EarI	CTCTTC	3 cut(s)	251, 654, 778
Ecl136II	GAGCTC	2 cut(s)	57, 771
Eco130I	CCWWGG	3 cut(s)	135, 454, 471
Eco24I	GRGCYC	2 cut(s)	59, 773
Eco31I	GGTCTC	1 cut(s)	603
Eco47I	GGWCC	2 cut(s)	182, 216
Eco53kI	GAGCTC	2 cut(s)	57, 771
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	2 cut(s)	57, 771
EcoO109I	RGGNCCY	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	683
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	3 cut(s)	135, 454, 471
EcoT38I	GRGCYC	2 cut(s)	59, 773
ErhI	CCWWGG	3 cut(s)	135, 454, 471
FaeI	CATG	4 cut(s)	139, 389, 605, 750
FaiI	YATR	9 cut(s)	137, 157, 285, 387, 395, 438, 603, 748, 787
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 633, 665
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	4 cut(s)	135, 385, 601, 746
FauI	CCCGC	2 cut(s)	328, 661
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	645, 731
FokI	GGATG	3 cut(s)	299, 540, 775
FriOI	GRGCYC	2 cut(s)	59, 773
Fsp4HI	GCNGC	2 cut(s)	645, 731
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	2 cut(s)	645, 731
GsuI	CTGGAG	1 cut(s)	761
HapII	CCGG	2 cut(s)	180, 698
Hin1II	CATG	4 cut(s)	139, 389, 605, 750
HinfI	GANTC	5 cut(s)	131, 176, 417, 532, 743
HpaII	CCGG	2 cut(s)	180, 698
HphI	GGTGA	2 cut(s)	185, 544
Hpy166II	GTNNAC	2 cut(s)	14, 564
Hpy188I	TCNGA	2 cut(s)	97, 345
Hpy188III	TCNNGA	3 cut(s)	180, 425, 740
Hpy8I	GTNNAC	2 cut(s)	14, 564
HpyAV	CCTTC	3 cut(s)	157, 261, 309
HpyCH4III	ACNGT	1 cut(s)	622
HpyCH4IV	ACGT	2 cut(s)	99, 381
HpyCH4V	TGCA	7 cut(s)	279, 290, 410, 464, 515, 733, 766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 641
HpyF3I	CTNAG	2 cut(s)	237, 318
HpySE526I	ACGT	2 cut(s)	99, 381
Hsp92II	CATG	4 cut(s)	139, 389, 605, 750
Kpn2I	TCCGGA	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	338, 549
LguI	GCTCTTC	3 cut(s)	251, 654, 778
LmnI	GCTCC	2 cut(s)	262, 727
Lsp1109I	GCAGC	2 cut(s)	656, 717
LweI	GCATC	3 cut(s)	285, 562, 753
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	99, 381
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	2 cut(s)	340, 551
MboI	GATC	2 cut(s)	338, 549
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	2 cut(s)	59, 773
MluCI	AATT	3 cut(s)	280, 541, 683
MlyI	GAGTC	2 cut(s)	125, 752
MnlI	CCTC	7 cut(s)	121, 336, 407, 452, 500, 503, 718
MroI	TCCGGA	1 cut(s)	179
MseI	TTAA	4 cut(s)	366, 375, 467, 752
MspI	CCGG	2 cut(s)	180, 698
MspR9I	CCNGG	2 cut(s)	221, 699
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	166, 641
NciI	CCSGG	1 cut(s)	699
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	338, 549
NlaIII	CATG	4 cut(s)	139, 389, 605, 750
NlaIV	GGNNCC	2 cut(s)	125, 218
NmuCI	GTSAC	1 cut(s)	673
NspV	TTCGAA	1 cut(s)	630
PciSI	GCTCTTC	3 cut(s)	251, 654, 778
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	176, 417, 532
PkrI	GCNGC	2 cut(s)	646, 732
PleI	GAGTC	2 cut(s)	125, 751
PpsI	GAGTC	2 cut(s)	125, 751
PpuMI	RGGWCCY	1 cut(s)	216
Psp124BI	GAGCTC	2 cut(s)	59, 773
Psp1406I	AACGTT	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	125, 218
PspPI	GGNCC	2 cut(s)	182, 216
PspPPI	RGGWCCY	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	735
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	1 cut(s)	338
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SacI	GAGCTC	2 cut(s)	59, 773
SapI	GCTCTTC	3 cut(s)	251, 654, 778
SaqAI	TTAA	4 cut(s)	366, 375, 467, 752
SatI	GCNGC	2 cut(s)	645, 731
Sau3AI	GATC	2 cut(s)	338, 549
Sau96I	GGNCC	2 cut(s)	182, 216
SchI	GAGTC	2 cut(s)	125, 752
ScrFI	CCNGG	2 cut(s)	221, 699
SduI	GDGCHC	2 cut(s)	59, 773
SfaNI	GCATC	3 cut(s)	285, 562, 753
SfcI	CTRYAG	1 cut(s)	731
SfuI	TTCGAA	1 cut(s)	630
SinI	GGWCC	2 cut(s)	182, 216
Sse9I	AATT	3 cut(s)	280, 541, 683
SsiI	CCGC	3 cut(s)	335, 525, 668
SspMI	CTAG	1 cut(s)	170
SstI	GAGCTC	2 cut(s)	59, 773
StyD4I	CCNGG	2 cut(s)	219, 697
StyI	CCWWGG	3 cut(s)	135, 454, 471
TaaI	ACNGT	1 cut(s)	622
TaiI	ACGT	2 cut(s)	102, 384
TaqI	TCGA	3 cut(s)	142, 548, 630
TasI	AATT	3 cut(s)	280, 541, 683
TatI	WGTACW	1 cut(s)	622
TfiI	GAWTC	3 cut(s)	176, 417, 532
Tru1I	TTAA	4 cut(s)	366, 375, 467, 752
Tru9I	TTAA	4 cut(s)	366, 375, 467, 752
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	2 cut(s)	644, 730
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	4 cut(s)	139, 366, 374, 774
TspGWI	ACGGA	2 cut(s)	136, 775
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	182, 216
XapI	RAATTY	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.