Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Forward (+)

1179526 .. 1181829

Gene Structure 2304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCTAATAGCAAAGCCAATTGCTCTTCTTATCGCCACCGTAAGCAGCACTGTTTTGTTCATACTACTCTCCCGGCCAAACCATTCTCCAACACCAGAGTCCATGGCTCGGAGCTTCGTTCTGTGGCTTCATGGGTTGGGCGATTCCGGCCCAGCCAACGAGCCCATCAAGACCCTTTTCACCTCCCCGGAGTTTAGGAACACCATCTGGTCCTTCCCATCTGCTCCCTCAAACCCAGTAACATGTAACTACGGTTCTGTGATGCCTTCATGGTTTGACATCCACGAGATTCCTATAACAGCTAATTCTCCAAAAGATGAAAGTGGTCTTCTCAAAGCAGTTAGGAACGTGCATAAGATGATAGACAAGGAGATAGCTGCTGGCACTAATCCTAAAAATGTGTTTGTGTGTGGATTCAGTCAAGGAGGTGCCTTGACATTGGCAAGTGTTCTGCTATACCCTCAAACACTAGGAGGTGCTGCAGTCTTTAGTGGATGGCTTCCTTTTAATTCATCTATGATACAACAAATTACCCCAGAGGCAAAGAGGGTACTTTTCAATTCTGAACTATTATTTTCTACCAATGCTGTGCTATACAGTAAATCTCATTTTGGTTGTCTAACTTGTCTATTTGTTATTGACTTATTGTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

218

Amino Acids

23.64

Weight (kDa)

7.71

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	32 - 179	3.2e-35	Phospholipase/Carboxylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	74
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	559
AhdI	GACNNNNNGTC	1 cut(s)	646
AluBI	AGCT	3 cut(s)	114, 302, 377
AluI	AGCT	3 cut(s)	114, 302, 377
AoxI	GGCC	2 cut(s)	74, 148
ApeKI	GCWGC	3 cut(s)	45, 377, 479
AspS9I	GGNCC	2 cut(s)	149, 210
AsuC2I	CCSGG	2 cut(s)	73, 188
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	3 cut(s)	57, 364, 466
BccI	CCATC	4 cut(s)	173, 212, 226, 489
BcnI	CCSGG	2 cut(s)	73, 188
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	3 cut(s)	46, 378, 480
BlsI	GCNGC	3 cut(s)	47, 379, 481
Bme1390I	CCNGG	2 cut(s)	73, 188
Bme18I	GGWCC	1 cut(s)	210
BmeRI	GACNNNNNGTC	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	149, 210
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	73, 188
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	73, 188
BsaJI	CCNNGG	2 cut(s)	102, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	102, 186
BseGI	GGATG	2 cut(s)	279, 500
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	57, 364, 466
BseYI	CCCAGC	1 cut(s)	151
BshFI	GGCC	2 cut(s)	76, 150
BshNI	GGYRCC	1 cut(s)	428
BsiSI	CCGG	3 cut(s)	73, 147, 188
BslI	CCNNNNNNNGG	1 cut(s)	108
BsnI	GGCC	2 cut(s)	76, 150
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	2 cut(s)	76, 150
BspLI	GGNNCC	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	484
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	102, 186
BssSI	CACGAG	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	284
Bst4CI	ACNGT	4 cut(s)	40, 52, 254, 599
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	382
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	279, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	71, 186
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	57, 364, 466
BstV2I	GAAGAC	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	76, 150
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	279, 500
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	149, 210
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	4 cut(s)	103, 131, 243, 270
CviQI	GTAC	1 cut(s)	551
DriI	GACNNNNNGTC	1 cut(s)	646
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	30
Eam1105I	GACNNNNNGTC	1 cut(s)	646
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	106, 134, 246, 273
FatI	CATG	4 cut(s)	102, 130, 242, 269
Fnu4HI	GCNGC	3 cut(s)	46, 378, 480
FokI	GGATG	2 cut(s)	266, 507
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	3 cut(s)	46, 378, 480
FspBI	CTAG	1 cut(s)	470
GluI	GCNGC	3 cut(s)	46, 378, 480
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	76, 150
HapII	CCGG	3 cut(s)	73, 147, 188
Hin1II	CATG	4 cut(s)	106, 134, 246, 273
HinfI	GANTC	4 cut(s)	98, 143, 289, 414
HpaII	CCGG	3 cut(s)	73, 147, 188
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	111, 565
Hpy188III	TCNNGA	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	223, 276
HpyCH4III	ACNGT	4 cut(s)	40, 52, 254, 599
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	2 cut(s)	352, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	4 cut(s)	106, 134, 246, 273
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	111, 229
LpnPI	CCDG	9 cut(s)	86, 108, 160, 165, 193, 201, 249, 366, 549
Lsp1109I	GCAGC	3 cut(s)	57, 364, 466
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	238, 245
MboII	GAAGA	2 cut(s)	17, 320
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	5 cut(s)	18, 304, 508, 528, 559
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	7 cut(s)	193, 238, 419, 467, 471, 532, 540
MseI	TTAA	1 cut(s)	507
MspI	CCGG	3 cut(s)	73, 147, 188
MspR9I	CCNGG	2 cut(s)	73, 188
MunI	CAATTG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	147
NciI	CCSGG	2 cut(s)	73, 188
NcoI	CCATGG	1 cut(s)	102
NlaIII	CATG	4 cut(s)	106, 134, 246, 273
NlaIV	GGNNCC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	246
PciI	ACATGT	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	143, 289, 414
PkrI	GCNGC	3 cut(s)	47, 379, 481
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PscI	ACATGT	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	2 cut(s)	149, 210
PsrI	GAACNNNNNNTAC	2 cut(s)	238, 270
PstI	CTGCAG	1 cut(s)	484
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	3 cut(s)	46, 378, 480
Sau96I	GGNCC	2 cut(s)	149, 210
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	73, 188
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	7 cut(s)	116, 185, 304, 351, 379, 430, 478
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	5 cut(s)	18, 304, 508, 528, 559
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	2 cut(s)	71, 186
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	4 cut(s)	40, 52, 254, 599
TaiI	ACGT	1 cut(s)	351
TasI	AATT	5 cut(s)	18, 304, 508, 528, 559
TfiI	GAWTC	3 cut(s)	143, 289, 414
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	3 cut(s)	45, 377, 479
TspDTI	ATGAA	5 cut(s)	49, 119, 258, 333, 501
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	210
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.