Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Reverse (-)

31733507 .. 31735787

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32260.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGCTTATCGTTTTAGCAAAGCCAATTGTTCTGTTTATATTGACCGTAAGTAGCACCGTCTTGTTCATACTACTCTCCCGACCTTCAAATCAATCTTCTCCGAGACCAGCGTCAATGGCGGCTCGAAGCTTCGTTCTCTGGCTTCATGGGCTGGGCGATTCAGGCCCAGCCAACGAGCCCATCAAGTCCCTCTTCACTTCCCCTGAGTTCCGGAACACCAAATGGTCCTTCCCAACTGCTCCGTCGACCCCAGTCTCTTGCAACTATGGTGCTGTGATGCCTTCATGGTTTGACATCCACGAAATTCCTATGACATCTAATTCTCCAAGAGAAGAAGCTGGTCTGCTTAAAGCAGTTCAGAATGTGCATAAGATGATAGACAAGGAGATAGAAGCTGGCACAAATCCTAGTAATGTCTTTGTGTGTGGATTCAGTCAAGGAGGTGCCTTGACATTGGCAAGTGTTCTGCTATATCCTAAAACTCTAGGAGGAGGTGCAGTGTTTAGTGGATGGCTTCCTTTCAATTCATCTATGGTGGAACAAATAAAACCAGAAGCGAAAAGGACGCCTATTTTGTGGTCTCATGGGATAGCCGACAATATGGTATTGTTTGAAGCTGGACAAGCAGGTCCCCCTTTCCTCGAACAAGTTGGTGTAAGCTGCGAGTTTAAGGCTTATCCTGGTCTTGGACATTCAATAGCCACTGAGGAGCTCAAGCACCTGGAATCATGGATCAAAACTCGTCTACAAAGTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

255

Amino Acids

27.54

Weight (kDa)

7.76

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	630
Acc36I	ACCTGC	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	446
AccI	GTMKAC	2 cut(s)	248, 748
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	743
AcsI	RAATTY	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	689
AgsI	TTSAA	4 cut(s)	90, 526, 617, 699
AjnI	CCWGG	2 cut(s)	682, 723
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	7 cut(s)	7, 132, 341, 398, 620, 663, 715
AluI	AGCT	7 cut(s)	7, 132, 341, 398, 620, 663, 715
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	3 cut(s)	100, 262, 588
AlwI	GGATC	1 cut(s)	743
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	663
ApoI	RAATTY	1 cut(s)	306
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspS9I	GGNCC	3 cut(s)	167, 228, 632
AvaII	GGWCC	2 cut(s)	228, 632
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	183, 717
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	2 cut(s)	191, 507
BciT130I	CCWGG	2 cut(s)	684, 725
BcoDI	GTCTC	3 cut(s)	100, 262, 588
BfaI	CTAG	2 cut(s)	411, 488
BfuAI	ACCTGC	1 cut(s)	620
BisI	GCNGC	2 cut(s)	123, 664
BlsI	GCNGC	2 cut(s)	124, 665
Bme1390I	CCNGG	2 cut(s)	684, 725
Bme18I	GGWCC	2 cut(s)	228, 632
BmgT120I	GGNCC	3 cut(s)	167, 228, 632
BmiI	GGNNCC	2 cut(s)	448, 634
BmrFI	CCNGG	2 cut(s)	684, 725
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	248
BoxI	GACNNNNGTC	2 cut(s)	112, 254
BpuEI	CTTGAG	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	569
BsaI	GGTCTC	2 cut(s)	100, 588
BsaWI	WCCGGW	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse1I	ACTGG	1 cut(s)	254
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	684, 725
BseGI	GGATG	2 cut(s)	297, 518
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMII	CTCAG	2 cut(s)	198, 699
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	2 cut(s)	507, 725
BseXI	GCAGC	1 cut(s)	650
BseYI	CCCAGC	2 cut(s)	154, 169
BsgI	GTGCAG	1 cut(s)	519
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	717
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	2 cut(s)	175, 618
BslI	CCNNNNNNNGG	1 cut(s)	689
BsmAI	GTCTC	3 cut(s)	100, 262, 588
BsmFI	GGGAC	2 cut(s)	175, 618
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	2 cut(s)	100, 588
Bsp1286I	GDGCHC	2 cut(s)	183, 717
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	735
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	2 cut(s)	199, 700
BspEI	TCCGGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	448, 634
BspMI	ACCTGC	1 cut(s)	620
BspPI	GGATC	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	446
BspTNI	GGTCTC	2 cut(s)	100, 588
BsrI	ACTGG	1 cut(s)	254
BssMI	GATC	1 cut(s)	735
BssNI	GRCGYC	1 cut(s)	569
Bst2UI	CCWGG	2 cut(s)	684, 725
Bst4CI	ACNGT	2 cut(s)	49, 61
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	2 cut(s)	207, 708
BstF5I	GGATG	2 cut(s)	297, 518
BstKTI	GATC	1 cut(s)	738
BstMAI	GTCTC	3 cut(s)	100, 262, 588
BstMBI	GATC	1 cut(s)	735
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 151, 165, 626
BstNI	CCWGG	2 cut(s)	684, 725
BstPAI	GACNNNNGTC	2 cut(s)	112, 254
BstSCI	CCNGG	2 cut(s)	682, 723
BstV1I	GCAGC	1 cut(s)	650
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	297, 518
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	507, 705
BveI	ACCTGC	1 cut(s)	620
Cac8I	GCNNGC	1 cut(s)	400
Cfr13I	GGNCC	3 cut(s)	167, 228, 632
CseI	GACGC	2 cut(s)	102, 577
CviAII	CATG	4 cut(s)	149, 288, 587, 732
DdeI	CTNAG	2 cut(s)	207, 708
DpnI	GATC	1 cut(s)	737
DpnII	GATC	1 cut(s)	735
DrdI	GACNNNNNNGTC	1 cut(s)	630
DseDI	GACNNNNNNGTC	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	715
Eco24I	GRGCYC	2 cut(s)	183, 717
Eco31I	GGTCTC	2 cut(s)	100, 588
Eco47I	GGWCC	2 cut(s)	228, 632
Eco53kI	GAGCTC	1 cut(s)	715
EcoICRI	GAGCTC	1 cut(s)	715
EcoO109I	RGGNCCY	1 cut(s)	632
EcoRII	CCWGG	2 cut(s)	682, 723
EcoT38I	GRGCYC	2 cut(s)	183, 717
FaeI	CATG	4 cut(s)	152, 291, 590, 735
FalI	AAGNNNNNCTT	3 cut(s)	179, 211, 745
FaqI	GGGAC	2 cut(s)	175, 618
FatI	CATG	4 cut(s)	148, 287, 586, 731
FblI	GTMKAC	2 cut(s)	248, 748
Fnu4HI	GCNGC	2 cut(s)	123, 664
FokI	GGATG	2 cut(s)	284, 525
FriOI	GRGCYC	2 cut(s)	183, 717
Fsp4HI	GCNGC	2 cut(s)	123, 664
FspBI	CTAG	2 cut(s)	411, 488
GluI	GCNGC	2 cut(s)	123, 664
GsaI	CCCAGC	2 cut(s)	158, 173
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	214
HgaI	GACGC	2 cut(s)	102, 577
Hin1I	GRCGYC	1 cut(s)	569
Hin1II	CATG	4 cut(s)	152, 291, 590, 735
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	2 cut(s)	5, 130
HinfI	GANTC	3 cut(s)	161, 432, 728
HpaII	CCGG	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	249, 749
Hpy188I	TCNGA	2 cut(s)	105, 363
Hpy188III	TCNNGA	3 cut(s)	81, 214, 762
Hpy8I	GTNNAC	2 cut(s)	249, 749
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	3 cut(s)	96, 241, 294
HpyCH4III	ACNGT	2 cut(s)	49, 61
HpyCH4V	TGCA	3 cut(s)	264, 370, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 151, 165, 626
HpyF3I	CTNAG	2 cut(s)	207, 708
Hsp92I	GRCGYC	1 cut(s)	569
Hsp92II	CATG	4 cut(s)	152, 291, 590, 735
Kpn2I	TCCGGA	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	735
LmnI	GCTCC	2 cut(s)	247, 712
Lsp1109I	GCAGC	1 cut(s)	650
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	411, 488
MalI	GATC	1 cut(s)	737
MboI	GATC	1 cut(s)	735
MboII	GAAGA	4 cut(s)	90, 187, 347, 750
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	2 cut(s)	183, 717
MluCI	AATT	4 cut(s)	27, 306, 322, 526
MnlI	CCTC	6 cut(s)	203, 437, 485, 488, 653, 703
MroI	TCCGGA	1 cut(s)	213
MseI	TTAA	2 cut(s)	351, 672
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	2 cut(s)	684, 725
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	684, 725
MwoI	GCNNNNNNNGC	4 cut(s)	119, 151, 165, 626
NdeII	GATC	1 cut(s)	735
NlaIII	CATG	4 cut(s)	152, 291, 590, 735
NlaIV	GGNNCC	2 cut(s)	448, 634
PfeI	GAWTC	3 cut(s)	161, 432, 728
PkrI	GCNGC	2 cut(s)	124, 665
PpuMI	RGGWCCY	1 cut(s)	632
PshAI	GACNNNNGTC	2 cut(s)	112, 254
Psp124BI	GAGCTC	1 cut(s)	717
Psp5II	RGGWCCY	1 cut(s)	632
Psp6I	CCWGG	2 cut(s)	682, 723
PspFI	CCCAGC	2 cut(s)	154, 169
PspGI	CCWGG	2 cut(s)	682, 723
PspN4I	GGNNCC	2 cut(s)	448, 634
PspPI	GGNCC	3 cut(s)	167, 228, 632
PspPPI	RGGWCCY	1 cut(s)	632
SacI	GAGCTC	1 cut(s)	717
SalI	GTCGAC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	351, 672
SatI	GCNGC	2 cut(s)	123, 664
Sau3AI	GATC	1 cut(s)	735
Sau96I	GGNCC	3 cut(s)	167, 228, 632
ScrFI	CCNGG	2 cut(s)	684, 725
SduI	GDGCHC	2 cut(s)	183, 717
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	2 cut(s)	228, 632
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	4 cut(s)	27, 306, 322, 526
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	411, 488
SstI	GAGCTC	1 cut(s)	717
StyD4I	CCNGG	2 cut(s)	682, 723
TaaI	ACNGT	2 cut(s)	49, 61
TaqI	TCGA	3 cut(s)	127, 248, 645
TasI	AATT	4 cut(s)	27, 306, 322, 526
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	3 cut(s)	161, 432, 728
Tru1I	TTAA	2 cut(s)	351, 672
Tru9I	TTAA	2 cut(s)	351, 672
TscAI	CASTG	2 cut(s)	507, 712
TseI	GCWGC	1 cut(s)	663
TspDTI	ATGAA	5 cut(s)	17, 58, 137, 276, 519
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	2 cut(s)	507, 712
VpaK11BI	GGWCC	2 cut(s)	228, 632
XapI	RAATTY	1 cut(s)	306
XmiI	GTMKAC	2 cut(s)	248, 748
XspI	CTAG	2 cut(s)	411, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.