Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Forward (+)

884964 .. 886943

Gene Structure 1980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030955

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCTAATAGCAAAGGCTGCAAAGCCAATTGCTCTTCTTATCGCCTCCGTAAGCAGCACTGTTTTGTTCGTACTGCTCTCCCGGCCAAACCATTCTCCAACACCAGAGTCCATGGCTCGGAGCTTCGTTCTCTGGCTTCATGGGTTGGGCGATTCCGGCCCAGCCAACGAGCCCATCAAGACCCTCTTCACCTCCCCGGAGTTTAGGAACACCATCTGGTCCTTCCCATCTGCTCCCTCAAACCCAGTAACATGTAACTATGGTGCTGTGATGCCTTCATGGTTTGACATCCACGAGATTCCTATAACAGCTAATTCTCCAAAAGATGAAAGTGGTCTTCTCAAAGCAGTTAGGAACGTGCATAAGATGATAGACAAGGAGATAGCTGACGGCACTAATCCTAAAAATGTGTTTGTGTGTGGATTCAGTCAAGGAGGTGCCTTGACATTGGCAAGTGTTCTGCTATACCCTCAAACACTAGGAGGTGCTGCAGTCTGTAGTGGATGGCTTCCTTTTAATTCATCTATAATACAACAAATTACCCCAGAGGCAAAGAGGACACCTATCTTGTGGTCGCATGGGATTGCTGACAAAACTGTCTTGTTCGAAGCTGGACAAGCAGGTCCTCCTTTCCTTGAACAAGCTGGTGTAAGCTGTGAGTTTAAGGCTTATCCTGGTCTTGGCCATTCCATAAGCAACGATGAGCTCAAGCACCTGGAGTCATGGATAAAACCTCGTCTACAGAGTTCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

252

Amino Acids

27.02

Weight (kDa)

7.05

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	35 - 244	4.7e-48	Phospholipase/Carboxylesterase
DLH	PF01738	128 - 235	2.9e-08	Dienelactone hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	596, 621
Acc36I	ACCTGC	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	739
AcoI	YGGCCR	2 cut(s)	83, 682
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	117, 680
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	638
AjnI	CCWGG	2 cut(s)	673, 714
AluBI	AGCT	7 cut(s)	123, 311, 386, 611, 644, 654, 706
AluI	AGCT	7 cut(s)	123, 311, 386, 611, 644, 654, 706
Alw21I	GWGCWC	1 cut(s)	708
AoxI	GGCC	3 cut(s)	83, 157, 682
ApeKI	GCWGC	3 cut(s)	17, 54, 488
AspS9I	GGNCC	3 cut(s)	158, 219, 623
AsuC2I	CCSGG	2 cut(s)	82, 197
AsuHPI	GGTGA	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	606
AvaII	GGWCC	2 cut(s)	219, 623
BalI	TGGCCA	1 cut(s)	684
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	2 cut(s)	174, 708
BauI	CACGAG	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	708
BbvI	GCAGC	3 cut(s)	4, 66, 475
BccI	CCATC	4 cut(s)	182, 221, 235, 498
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	2 cut(s)	675, 716
BcnI	CCSGG	2 cut(s)	82, 197
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	3 cut(s)	489, 496, 740
BfuAI	ACCTGC	1 cut(s)	611
BisI	GCNGC	3 cut(s)	18, 55, 489
BlsI	GCNGC	3 cut(s)	19, 56, 490
Bme1390I	CCNGG	4 cut(s)	82, 197, 675, 716
Bme18I	GGWCC	2 cut(s)	219, 623
BmgT120I	GGNCC	3 cut(s)	158, 219, 623
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	4 cut(s)	82, 197, 675, 716
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	737
Bpu14I	TTCGAA	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	2 cut(s)	82, 197
BsaJI	CCNNGG	2 cut(s)	111, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 680
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	675, 716
BseDI	CCNNGG	2 cut(s)	111, 195
BseGI	GGATG	2 cut(s)	288, 509
BseLI	CCNNNNNNNGG	2 cut(s)	117, 680
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	4, 66, 475
BseYI	CCCAGC	1 cut(s)	160
BshFI	GGCC	3 cut(s)	85, 159, 684
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	708
BsiSI	CCGG	3 cut(s)	82, 156, 197
BslI	CCNNNNNNNGG	2 cut(s)	117, 680
BsnI	GGCC	3 cut(s)	85, 159, 684
Bsp119I	TTCGAA	1 cut(s)	606
Bsp1286I	GDGCHC	2 cut(s)	174, 708
Bsp19I	CCATGG	1 cut(s)	111
BspANI	GGCC	3 cut(s)	85, 159, 684
BspLI	GGNNCC	1 cut(s)	439
BspMAI	CTGCAG	1 cut(s)	493
BspMI	ACCTGC	1 cut(s)	611
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	606
BspT107I	GGYRCC	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	111, 195
BssSI	CACGAG	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	675, 716
Bst4CI	ACNGT	2 cut(s)	61, 598
Bst6I	CTCTTC	2 cut(s)	39, 191
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstBI	TTCGAA	1 cut(s)	606
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	288, 509
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 82, 156, 617
BstNI	CCWGG	2 cut(s)	675, 716
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	4 cut(s)	80, 195, 673, 714
BstSFI	CTRYAG	3 cut(s)	489, 496, 740
BstV1I	GCAGC	3 cut(s)	4, 66, 475
BstV2I	GAAGAC	1 cut(s)	329
BsuRI	GGCC	3 cut(s)	85, 159, 684
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	288, 509
BtsIMutI	CAGTG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	611
Cfr13I	GGNCC	3 cut(s)	158, 219, 623
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	6 cut(s)	112, 140, 252, 279, 578, 723
CviQI	GTAC	1 cut(s)	71
DrdI	GACNNNNNNGTC	2 cut(s)	596, 621
DseDI	GACNNNNNNGTC	2 cut(s)	596, 621
EaeI	YGGCCR	2 cut(s)	83, 682
Eam1104I	CTCTTC	2 cut(s)	39, 191
EarI	CTCTTC	2 cut(s)	39, 191
Ecl136II	GAGCTC	1 cut(s)	706
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	174, 708
Eco47I	GGWCC	2 cut(s)	219, 623
Eco53kI	GAGCTC	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	706
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	673, 714
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	174, 708
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	6 cut(s)	115, 143, 255, 282, 581, 726
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	6 cut(s)	111, 139, 251, 278, 577, 722
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	3 cut(s)	18, 55, 489
FokI	GGATG	2 cut(s)	275, 516
FriOI	GRGCYC	2 cut(s)	174, 708
Fsp4HI	GCNGC	3 cut(s)	18, 55, 489
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	3 cut(s)	18, 55, 489
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	3 cut(s)	85, 159, 684
HapII	CCGG	3 cut(s)	82, 156, 197
Hin1II	CATG	6 cut(s)	115, 143, 255, 282, 581, 726
HinfI	GANTC	5 cut(s)	107, 152, 298, 423, 719
HpaII	CCGG	3 cut(s)	82, 156, 197
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	740
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	2 cut(s)	178, 753
Hpy8I	GTNNAC	1 cut(s)	740
HpyAV	CCTTC	2 cut(s)	232, 285
HpyCH4III	ACNGT	2 cut(s)	61, 598
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	3 cut(s)	20, 361, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 82, 156, 617
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	6 cut(s)	115, 143, 255, 282, 581, 726
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	120, 238
Lsp1109I	GCAGC	3 cut(s)	4, 66, 475
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	247, 254
MboII	GAAGA	4 cut(s)	26, 178, 329, 741
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	2 cut(s)	174, 708
MlsI	TGGCCA	1 cut(s)	684
MluCI	AATT	4 cut(s)	27, 313, 517, 537
MluNI	TGGCCA	1 cut(s)	684
MlyI	GAGTC	2 cut(s)	116, 728
MmeI	TCCRAC	1 cut(s)	122
Mox20I	TGGCCA	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	2 cut(s)	516, 663
Msp20I	TGGCCA	1 cut(s)	684
MspI	CCGG	3 cut(s)	82, 156, 197
MspR9I	CCNGG	4 cut(s)	82, 197, 675, 716
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	675, 716
MwoI	GCNNNNNNNGC	4 cut(s)	17, 82, 156, 617
NciI	CCSGG	2 cut(s)	82, 197
NcoI	CCATGG	1 cut(s)	111
NlaIII	CATG	6 cut(s)	115, 143, 255, 282, 581, 726
NlaIV	GGNNCC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	255
NspV	TTCGAA	1 cut(s)	606
PciI	ACATGT	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	152, 298, 423
PkrI	GCNGC	3 cut(s)	19, 56, 490
PleI	GAGTC	2 cut(s)	115, 727
PpsI	GAGTC	2 cut(s)	115, 727
PpuMI	RGGWCCY	1 cut(s)	623
PscI	ACATGT	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	708
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	2 cut(s)	673, 714
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	2 cut(s)	673, 714
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	3 cut(s)	158, 219, 623
PspPPI	RGGWCCY	1 cut(s)	623
PstI	CTGCAG	1 cut(s)	493
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	708
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	516, 663
SatI	GCNGC	3 cut(s)	18, 55, 489
Sau96I	GGNCC	3 cut(s)	158, 219, 623
SchI	GAGTC	2 cut(s)	116, 728
ScrFI	CCNGG	4 cut(s)	82, 197, 675, 716
SduI	GDGCHC	2 cut(s)	174, 708
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	3 cut(s)	489, 496, 740
SfuI	TTCGAA	1 cut(s)	606
SinI	GGWCC	2 cut(s)	219, 623
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	4 cut(s)	27, 313, 517, 537
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	4 cut(s)	80, 195, 673, 714
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	61, 598
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	606
TasI	AATT	4 cut(s)	27, 313, 517, 537
TfiI	GAWTC	3 cut(s)	152, 298, 423
Tru1I	TTAA	2 cut(s)	516, 663
Tru9I	TTAA	2 cut(s)	516, 663
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	3 cut(s)	17, 54, 488
TspDTI	ATGAA	4 cut(s)	128, 267, 342, 510
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	219, 623
XceI	RCATGY	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	739
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.