Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005595.1

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 603

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

acacctatcttgtggtctcatgggattgctgacaaaactgtcttgttcgaagctggacaagcaggtcctcctttccttgaacaagccggtgtaagctgtgagtttaaggcttatcctggtcttggccattccataagcaacgatgagctcaagcacctggagtcatggataaaacctcgtctacagagttcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

65

Amino Acids

7.08

Weight (kDa)

5.79

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	38, 63
Acc36I	ACCTGC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	115, 156
AluBI	AGCT	3 cut(s)	53, 96, 148
AluI	AGCT	3 cut(s)	53, 96, 148
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BciT130I	CCWGG	2 cut(s)	117, 158
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	117, 158
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	117, 158
BpmI	CTGGAG	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	117, 158
BseLI	CCNNNNNNNGG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	21
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
Bst2UI	CCWGG	2 cut(s)	117, 158
Bst4CI	ACNGT	1 cut(s)	40
BstBI	TTCGAA	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	117, 158
BstSCI	CCNGG	2 cut(s)	115, 156
BstSFI	CTRYAG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	65
CviAII	CATG	2 cut(s)	20, 165
CviJI	RGCY	6 cut(s)	53, 86, 96, 110, 126, 148
CviKI_1	RGCY	6 cut(s)	53, 86, 96, 110, 126, 148
DrdI	GACNNNNNNGTC	2 cut(s)	38, 63
DseDI	GACNNNNNNGTC	2 cut(s)	38, 63
EaeI	YGGCCR	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	115, 156
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	2 cut(s)	23, 168
FaiI	YATR	3 cut(s)	21, 134, 166
FatI	CATG	2 cut(s)	19, 164
FblI	GTMKAC	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	2 cut(s)	23, 168
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	23, 168
LpnPI	CCDG	7 cut(s)	39, 48, 100, 102, 129, 143, 170
MboII	GAAGA	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	150
MlsI	TGGCCA	1 cut(s)	126
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	78, 186
Mox20I	TGGCCA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	126
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	117, 158
MvaI	CCWGG	2 cut(s)	117, 158
MwoI	GCNNNNNNNGC	1 cut(s)	59
NlaIII	CATG	2 cut(s)	23, 168
NspV	TTCGAA	1 cut(s)	48
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	115, 156
PspGI	CCWGG	2 cut(s)	115, 156
PspPI	GGNCC	1 cut(s)	65
PspPPI	RGGWCCY	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	117, 158
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	7 cut(s)	7, 55, 67, 98, 150, 159, 178
SfcI	CTRYAG	1 cut(s)	182
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	115, 156
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.