Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Reverse (-)

55911783 .. 55913012

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0391800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCTCGTAGAAAGTTGTCGAAGACAAAAAGGATTATTCTAATGCTGGACAATATTAAGGATTTGCTTAAGTTTGTCGTCATGATATACATTATGATGTATATCATTGCAGAACGACATTATCGGAAGTATAGATTGAAATCACCATCTATTTATGAAAATAAAATGGTTGTTTGCGAAAAACAAGTGTATGACGATTGGGTTAAGGTTCACAAGGAAACCAAAAGACTAAGACTTAAACCATTCATTCATTATGATAGTTTGGTGGAAGCTTTTGGGAGAGATAGAGCCAATGGGTTAGGAGCTGAAGGACCTGCTGAAGCGAATGAAGATTTGAATAATGATAATGAATTTGTTGATCTTGAAGGAGATGGTTTGCCTGAAAATATTGTTCCTACACCTGCTAGTCGTACAACTTGTTTTGCTTCTAATTCAACTTGGACTAGAAAGCGAGCAAGGGACGCTTATGCTCAATGCTTGGGAGACATGGCTAGCACACTTCGCTCCTTTGTGGATGTGACCAAGACACATTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCAACATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGCTGCTGCTACAATTATTGGCGATGATTCCAAAATTGAGCTCTTGTTCAGCTTACCTGACAATTTAAAGAGCCAATGGATTTACAAGCTTCTTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

248

Amino Acids

28.61

Weight (kDa)

7.69

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	409
Acc36I	ACCTGC	2 cut(s)	322, 409
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	2 cut(s)	327, 339
AfaI	GTAC	2 cut(s)	412, 552
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	7 cut(s)	139, 337, 365, 435, 559, 617, 625
AluBI	AGCT	6 cut(s)	272, 305, 604, 685, 696, 733
AluI	AGCT	6 cut(s)	272, 305, 604, 685, 696, 733
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	2 cut(s)	477, 530
ApeKI	GCWGC	2 cut(s)	647, 650
ApoI	RAATTY	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	135
AsuNHI	GCTAGC	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	2 cut(s)	634, 637
BccI	CCATC	2 cut(s)	154, 365
BcoDI	GTCTC	2 cut(s)	477, 530
BfaI	CTAG	4 cut(s)	405, 444, 492, 745
BfrI	CTTAAG	1 cut(s)	68
BfuAI	ACCTGC	2 cut(s)	322, 409
BisI	GCNGC	2 cut(s)	648, 651
BlsI	GCNGC	2 cut(s)	649, 652
BmcAI	AGTACT	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmtI	GCTAGC	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	662
BsaBI	GATNNNNATC	2 cut(s)	101, 139
Bse3DI	GCAATG	1 cut(s)	105
Bse8I	GATNNNNATC	2 cut(s)	101, 139
BseGI	GGATG	1 cut(s)	520
BseJI	GATNNNNATC	2 cut(s)	101, 139
BseMI	GCAATG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	634, 637
BsiHKAI	GWGCWC	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	473
BsmAI	GTCTC	2 cut(s)	477, 530
BsmFI	GGGAC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	81
BspMI	ACCTGC	2 cut(s)	322, 409
BspOI	GCTAGC	1 cut(s)	495
BspQI	GCTCTTC	1 cut(s)	594
BspTI	CTTAAG	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	105
BssMI	GATC	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	594
BstAFI	CTTAAG	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	453, 493
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	2 cut(s)	477, 530
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 501
BstV1I	GCAGC	2 cut(s)	634, 637
BstV2I	GAAGAC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	520
BveI	ACCTGC	2 cut(s)	322, 409
Cac8I	GCNNGC	2 cut(s)	453, 493
CciI	TCATGA	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	2 cut(s)	411, 551
CviAII	CATG	3 cut(s)	82, 487, 566
CviQI	GTAC	2 cut(s)	411, 551
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
DraI	TTTAAA	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	685
Eco24I	GRGCYC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	2 cut(s)	327, 339
EcoICRI	GAGCTC	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	687
FaeI	CATG	3 cut(s)	85, 490, 569
FalI	AAGNNNNNCTT	4 cut(s)	448, 480, 537, 569
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	81, 486, 565
Fnu4HI	GCNGC	2 cut(s)	648, 651
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	2 cut(s)	648, 651
FspBI	CTAG	4 cut(s)	405, 444, 492, 745
GluI	GCNGC	2 cut(s)	648, 651
HgaI	GACGC	1 cut(s)	470
Hin1II	CATG	3 cut(s)	85, 490, 569
HindIII	AAGCTT	2 cut(s)	270, 731
HinfI	GANTC	1 cut(s)	671
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	2 cut(s)	211, 590
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	82, 362
Hpy8I	GTNNAC	2 cut(s)	211, 590
HpyAV	CCTTC	3 cut(s)	302, 359, 611
HpyCH4V	TGCA	2 cut(s)	110, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 501
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	85, 490, 569
Kzo9I	GATC	1 cut(s)	358
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	2 cut(s)	302, 509
LpnPI	CCDG	5 cut(s)	32, 327, 393, 414, 714
Lsp1109I	GCAGC	2 cut(s)	634, 637
MaeI	CTAG	4 cut(s)	405, 444, 492, 745
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	3 cut(s)	34, 341, 611
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	6 cut(s)	350, 430, 612, 657, 678, 706
MnlI	CCTC	2 cut(s)	578, 637
MseI	TTAA	6 cut(s)	57, 69, 204, 237, 710, 738
MslI	CAYNNNNRTG	1 cut(s)	95
MspCI	CTTAAG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	461, 501
NdeII	GATC	1 cut(s)	358
NheI	GCTAGC	1 cut(s)	491
NlaIII	CATG	3 cut(s)	85, 490, 569
NmuCI	GTSAC	1 cut(s)	517
PagI	TCATGA	1 cut(s)	81
PaqCI	CACCTGC	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	671
PkrI	GCNGC	2 cut(s)	649, 652
PpuMI	RGGWCCY	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	687
Psp5II	RGGWCCY	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	311
PspPPI	RGGWCCY	1 cut(s)	311
RsaI	GTAC	2 cut(s)	412, 552
RsaNI	GTAC	2 cut(s)	411, 551
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	687
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	6 cut(s)	57, 69, 204, 237, 710, 738
SatI	GCNGC	2 cut(s)	648, 651
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	311
ScaI	AGTACT	1 cut(s)	552
SduI	GDGCHC	1 cut(s)	687
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	2 cut(s)	68, 641
SmoI	CTYRAG	2 cut(s)	68, 641
Sse9I	AATT	6 cut(s)	350, 430, 612, 657, 678, 706
SspI	AATATT	2 cut(s)	55, 388
SspMI	CTAG	4 cut(s)	405, 444, 492, 745
SstI	GAGCTC	1 cut(s)	687
TaqI	TCGA	2 cut(s)	20, 597
TasI	AATT	6 cut(s)	350, 430, 612, 657, 678, 706
TatI	WGTACW	1 cut(s)	550
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	6 cut(s)	57, 69, 204, 237, 710, 738
Tru9I	TTAA	6 cut(s)	57, 69, 204, 237, 710, 738
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	2 cut(s)	647, 650
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	7 cut(s)	171, 235, 239, 342, 363, 557, 623
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XspI	CTAG	4 cut(s)	405, 444, 492, 745
ZrmI	AGTACT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.