Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Forward (+)

588886 .. 591497

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G012400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAATCTTTGGCTTTTAGCAAAGCCAATTGCTGTGCTTTTGGTCACCGTAAGCAGCACCATCTTCTTGCTGCTACTCTCCCAGCAAAATCAATCTCCAAGACCAGCGTCAATGGCTCGAAGCTTTGTTCTGTGGCTTCATGGGTTGGGTGACTCAGGCCCAGCCAACGAGCCCATCAAGACCCTCTTCACTTCGCCTGAGTTTAGGAACACTAAGTGGTCCTTCCCATCAGCTCCATCAAACCCAGTTACATGCAATTATGGTGCTAGGATGCCTTCATGGTTTGACATTGGCGAGATTCCTGTAACAGCTAATTCTCCAAACAATGAAAGTGACCTGCTCAAAGCAGTTAAGAGTGTGCATAAGATGATAGACAAGGAGATAGATGCTGGCACAAATCCTAGTAATGTCTTTGTGTGTGGATTCAGCCAAGGAGGTGCCTTGACATTGGCAAGTGTTCTGCTATATCCTAAAACTCTTGGAGGAGCAGCAGTGTTTAGTGGATGGGTTCCTTTTAGTTCATCTATAATAGAACAAATCCCACCAGAAGCAAAGAGGACACCTATTTTGTGGTCTCATGGGATTGCAGACAGAACAGTATTTCTTGAAGCTGGACAAGCAGGTCCCCCCTTCCTTGAACGAGCTGGTGTAAACTGCGAGTTTAAGGCTTATCCTGATCTTGGCCATTCAATAAGCAATGAGGAGCTCAAGCACCTGGAATCATGGATTAAAGCTCGTCTACCAAGTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

252

Amino Acids

27.23

Weight (kDa)

6.96

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	621
Acc36I	ACCTGC	2 cut(s)	345, 611
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	739
AcoI	YGGCCR	1 cut(s)	682
AdeI	CACNNNGTG	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	3 cut(s)	608, 638, 690
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	7 cut(s)	123, 233, 311, 611, 644, 706, 734
AluI	AGCT	7 cut(s)	123, 233, 311, 611, 644, 706, 734
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	1 cut(s)	579
AoxI	GGCC	2 cut(s)	157, 682
ApeKI	GCWGC	3 cut(s)	54, 70, 488
ArsI	GACNNNNNNTTYG	2 cut(s)	550, 582
AspS9I	GGNCC	3 cut(s)	158, 219, 623
AsuHPI	GGTGA	2 cut(s)	37, 161
AvaII	GGWCC	2 cut(s)	219, 623
BalI	TGGCCA	1 cut(s)	684
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	2 cut(s)	174, 708
Bbv12I	GWGCWC	1 cut(s)	708
BbvI	GCAGC	3 cut(s)	57, 66, 500
BccI	CCATC	5 cut(s)	68, 182, 235, 244, 498
BciT130I	CCWGG	1 cut(s)	716
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	2 cut(s)	267, 402
BfuAI	ACCTGC	2 cut(s)	345, 611
BisI	GCNGC	3 cut(s)	55, 71, 489
BlsI	GCNGC	3 cut(s)	56, 72, 490
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	2 cut(s)	219, 623
BmgT120I	GGNCC	3 cut(s)	158, 219, 623
BmiI	GGNNCC	3 cut(s)	439, 510, 625
BmrFI	CCNGG	1 cut(s)	716
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	261, 376
BmuI	ACTGGG	1 cut(s)	239
BoxI	GACNNNNGTC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	703
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	2 cut(s)	276, 509
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	2 cut(s)	168, 189
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	2 cut(s)	498, 716
BseXI	GCAGC	3 cut(s)	57, 66, 500
BseYI	CCCAGC	2 cut(s)	81, 160
BshFI	GGCC	2 cut(s)	159, 684
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	708
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	1 cut(s)	579
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	2 cut(s)	159, 684
Bso31I	GGTCTC	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	174, 708
Bsp143I	GATC	1 cut(s)	676
BspANI	GGCC	2 cut(s)	159, 684
BspCNI	CTCAG	2 cut(s)	167, 190
BspLI	GGNNCC	3 cut(s)	439, 510, 625
BspMI	ACCTGC	2 cut(s)	345, 611
BspT107I	GGYRCC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	579
BsrDI	GCAATG	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	1 cut(s)	676
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	2 cut(s)	49, 598
Bst6I	CTCTTC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	3 cut(s)	154, 198, 213
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	276, 509
BstKTI	GATC	1 cut(s)	679
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	1 cut(s)	676
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 617
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	1 cut(s)	255
BstPAI	GACNNNNGTC	1 cut(s)	106
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	714
BstV1I	GCAGC	3 cut(s)	57, 66, 500
BsuRI	GGCC	2 cut(s)	159, 684
BtsCI	GGATG	2 cut(s)	276, 509
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
BveI	ACCTGC	2 cut(s)	345, 611
Cac8I	GCNNGC	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	158, 219, 623
CseI	GACGC	1 cut(s)	96
CviAII	CATG	5 cut(s)	140, 252, 279, 578, 723
DdeI	CTNAG	3 cut(s)	154, 198, 213
DpnI	GATC	1 cut(s)	678
DpnII	GATC	1 cut(s)	676
DraIII	CACNNNGTG	1 cut(s)	216
DrdI	GACNNNNNNGTC	1 cut(s)	621
DseDI	GACNNNNNNGTC	1 cut(s)	621
EaeI	YGGCCR	1 cut(s)	682
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	706
Eco130I	CCWWGG	1 cut(s)	430
Eco24I	GRGCYC	2 cut(s)	174, 708
Eco31I	GGTCTC	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	219, 623
Eco53kI	GAGCTC	1 cut(s)	706
Eco91I	GGTNACC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	706
EcoO109I	RGGNCCY	1 cut(s)	623
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	174, 708
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	5 cut(s)	143, 255, 282, 581, 726
FaiI	YATR	9 cut(s)	141, 253, 261, 280, 363, 466, 527, 579, 724
FalI	AAGNNNNNCTT	5 cut(s)	170, 202, 206, 238, 736
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	5 cut(s)	139, 251, 278, 577, 722
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	3 cut(s)	55, 71, 489
FokI	GGATG	2 cut(s)	283, 516
FriOI	GRGCYC	2 cut(s)	174, 708
Fsp4HI	GCNGC	3 cut(s)	55, 71, 489
FspBI	CTAG	2 cut(s)	267, 402
GluI	GCNGC	3 cut(s)	55, 71, 489
GsaI	CCCAGC	2 cut(s)	85, 164
HaeIII	GGCC	2 cut(s)	159, 684
HgaI	GACGC	1 cut(s)	96
Hin1II	CATG	5 cut(s)	143, 255, 282, 581, 726
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	5 cut(s)	4, 152, 298, 423, 719
HphI	GGTGA	2 cut(s)	37, 161
Hpy166II	GTNNAC	2 cut(s)	652, 740
Hpy188III	TCNNGA	4 cut(s)	178, 605, 674, 753
Hpy8I	GTNNAC	2 cut(s)	652, 740
HpyAV	CCTTC	3 cut(s)	232, 285, 640
HpyCH4III	ACNGT	2 cut(s)	49, 598
HpyCH4V	TGCA	3 cut(s)	255, 361, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 617
HpyF3I	CTNAG	3 cut(s)	154, 198, 213
Hsp92II	CATG	5 cut(s)	143, 255, 282, 581, 726
Kzo9I	GATC	1 cut(s)	676
LmnI	GCTCC	3 cut(s)	238, 485, 703
Lsp1109I	GCAGC	3 cut(s)	57, 66, 500
LweI	GCATC	2 cut(s)	261, 376
MaeI	CTAG	2 cut(s)	267, 402
MaeIII	GTNAC	5 cut(s)	43, 149, 247, 304, 332
MalI	GATC	1 cut(s)	678
MboI	GATC	1 cut(s)	676
MboII	GAAGA	3 cut(s)	55, 178, 741
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	2 cut(s)	174, 708
MlsI	TGGCCA	1 cut(s)	684
MluCI	AATT	3 cut(s)	27, 256, 313
MluNI	TGGCCA	1 cut(s)	684
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	194, 428, 476, 549, 694
Mox20I	TGGCCA	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	3 cut(s)	351, 663, 729
Msp20I	TGGCCA	1 cut(s)	684
MspR9I	CCNGG	1 cut(s)	716
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	2 cut(s)	113, 617
NdeII	GATC	1 cut(s)	676
NlaIII	CATG	5 cut(s)	143, 255, 282, 581, 726
NlaIV	GGNNCC	3 cut(s)	439, 510, 625
NmuCI	GTSAC	3 cut(s)	43, 149, 332
NspI	RCATGY	1 cut(s)	255
PfeI	GAWTC	4 cut(s)	4, 298, 423, 719
PkrI	GCNGC	3 cut(s)	56, 72, 490
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	623
PshAI	GACNNNNGTC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	708
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	714
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	2 cut(s)	81, 160
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	3 cut(s)	439, 510, 625
PspPI	GGNCC	3 cut(s)	158, 219, 623
PspPPI	RGGWCCY	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	351, 663, 729
SatI	GCNGC	3 cut(s)	55, 71, 489
Sau3AI	GATC	1 cut(s)	676
Sau96I	GGNCC	3 cut(s)	158, 219, 623
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	2 cut(s)	174, 708
SfaNI	GCATC	2 cut(s)	261, 376
SinI	GGWCC	2 cut(s)	219, 623
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	3 cut(s)	27, 256, 313
SspMI	CTAG	2 cut(s)	267, 402
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	49, 598
TaqI	TCGA	1 cut(s)	118
TasI	AATT	3 cut(s)	27, 256, 313
TfiI	GAWTC	4 cut(s)	4, 298, 423, 719
Tru1I	TTAA	3 cut(s)	351, 663, 729
Tru9I	TTAA	3 cut(s)	351, 663, 729
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	3 cut(s)	43, 149, 332
TseI	GCWGC	3 cut(s)	54, 70, 488
Tsp45I	GTSAC	3 cut(s)	43, 149, 332
TspDTI	ATGAA	5 cut(s)	17, 128, 267, 342, 510
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	2 cut(s)	219, 623
XceI	RCATGY	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	739
XspI	CTAG	2 cut(s)	267, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.