Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Forward (+)

906454 .. 908766

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28309

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCTAATAGCCAAGCCAATTGCTCTTCTTGTCGCCACCGTGGGCAGCACTGTTTTGTTCATACTACTGTCTCGGCCGAACCATTCTCCAACACCAGAGTCCATGGCTCGGAGCTTCGTTCTGTGGCTTCATGGGTTGGGCGATTCCGGCCCAGCCAACGAGCCCATCAAGACCCTCTTCACCTCTCCGGAGTTTAGGAACACCATCTGGTCCTTCCCATCTGCTCCCTCAAACCCAGTAACATGTAACTACGGTTCTGTGATGCCTTCATGGTTTGACATCCACGAGATTCCTATAACAGCTAATTCTCCAAAAGATGAAAGTGGTCTTCTCAAAGCAGTTAGGAACGTGCATAAGATGATAGACAAGGAGATAGCTGACGGCACTAATCCGAAAAATGTGTTTGTGTGTGGATTCAGTCAAGGAGGTGCCTTGACATTGGCAAGTGTTCTGCTATACCCTCAAACACTAGGAGGTGCTGCAGTCTTTAGTGGATGGCTTCCTTTTAATTCATCTATAATACAACAAATTAGCCCAGAGGCAAAGAGGACACCTATCTTGTGGTCTCATGGGATTGCTGACAAAACTGTCTTGTTCGAAGCTGGACAAGCAGGTCCTCCTTTCCTTGAACAAGCCGGTGTAAGCTGTGAGTTTAAGGCTTATCCTGGTCTTGGCCATTCCATAAGCAACGATGAGCTCAAGCACCTGGAGTCATGGATAAAACCTCTTCTACAGAGTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

248

Amino Acids

26.74

Weight (kDa)

6.37

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	32 - 241	6.1e-48	Phospholipase/Carboxylesterase
DLH	PF01738	125 - 232	1.4e-09	Dienelactone hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	587, 612
Acc36I	ACCTGC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	428
AccIII	TCCGGA	1 cut(s)	187
AcoI	YGGCCR	2 cut(s)	74, 673
AfiI	CCNNNNNNNGG	2 cut(s)	108, 671
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	629
AjnI	CCWGG	2 cut(s)	664, 705
AluBI	AGCT	6 cut(s)	114, 302, 377, 602, 645, 697
AluI	AGCT	6 cut(s)	114, 302, 377, 602, 645, 697
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	2 cut(s)	75, 570
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	3 cut(s)	74, 148, 673
ApeKI	GCWGC	2 cut(s)	45, 479
AspS9I	GGNCC	3 cut(s)	149, 210, 614
AsuHPI	GGTGA	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	597
AvaII	GGWCC	2 cut(s)	210, 614
BalI	TGGCCA	1 cut(s)	675
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	2 cut(s)	165, 699
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	2 cut(s)	57, 466
BccI	CCATC	4 cut(s)	173, 212, 226, 489
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	2 cut(s)	666, 707
BcoDI	GTCTC	2 cut(s)	75, 570
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	2 cut(s)	480, 731
BfuAI	ACCTGC	1 cut(s)	602
BisI	GCNGC	2 cut(s)	46, 480
BlsI	GCNGC	2 cut(s)	47, 481
Bme1390I	CCNGG	2 cut(s)	666, 707
Bme18I	GGWCC	2 cut(s)	210, 614
BmgT120I	GGNCC	3 cut(s)	149, 210, 614
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	666, 707
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	728
Bpu14I	TTCGAA	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	683
BsaI	GGTCTC	1 cut(s)	570
BsaJI	CCNNGG	2 cut(s)	39, 102
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 671
Bse118I	RCCGGY	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	236
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	666, 707
BseDI	CCNNGG	2 cut(s)	39, 102
BseGI	GGATG	2 cut(s)	279, 500
BseLI	CCNNNNNNNGG	2 cut(s)	108, 671
BseNI	ACTGG	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	57, 466
BseYI	CCCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	76, 150, 675
BshNI	GGYRCC	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	699
BsiSI	CCGG	3 cut(s)	147, 188, 636
BslI	CCNNNNNNNGG	2 cut(s)	108, 671
BsmAI	GTCTC	2 cut(s)	75, 570
BsnI	GGCC	3 cut(s)	76, 150, 675
Bso31I	GGTCTC	1 cut(s)	570
Bsp119I	TTCGAA	1 cut(s)	597
Bsp1286I	GDGCHC	2 cut(s)	165, 699
Bsp13I	TCCGGA	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	3 cut(s)	76, 150, 675
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	602
BspQI	GCTCTTC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	597
BspT107I	GGYRCC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	635
BsrI	ACTGG	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	2 cut(s)	39, 102
BssSI	CACGAG	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	666, 707
Bst4CI	ACNGT	5 cut(s)	40, 52, 69, 254, 589
Bst6I	CTCTTC	3 cut(s)	30, 182, 732
BstBI	TTCGAA	1 cut(s)	597
BstDSI	CCRYGG	2 cut(s)	39, 102
BstF5I	GGATG	2 cut(s)	279, 500
BstMAI	GTCTC	2 cut(s)	75, 570
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 608
BstNI	CCWGG	2 cut(s)	666, 707
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	664, 705
BstSFI	CTRYAG	2 cut(s)	480, 731
BstV1I	GCAGC	2 cut(s)	57, 466
BstV2I	GAAGAC	1 cut(s)	320
BstZI	CGGCCG	1 cut(s)	74
BsuRI	GGCC	3 cut(s)	76, 150, 675
BtgI	CCRYGG	2 cut(s)	39, 102
BtsCI	GGATG	2 cut(s)	279, 500
BtsIMutI	CAGTG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	602
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	3 cut(s)	149, 210, 614
CviAII	CATG	6 cut(s)	103, 131, 243, 270, 569, 714
DrdI	GACNNNNNNGTC	2 cut(s)	587, 612
DseDI	GACNNNNNNGTC	2 cut(s)	587, 612
EaeI	YGGCCR	2 cut(s)	74, 673
EagI	CGGCCG	1 cut(s)	74
Eam1104I	CTCTTC	3 cut(s)	30, 182, 732
EarI	CTCTTC	3 cut(s)	30, 182, 732
Ecl136II	GAGCTC	1 cut(s)	697
EclXI	CGGCCG	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	2 cut(s)	165, 699
Eco31I	GGTCTC	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	210, 614
Eco52I	CGGCCG	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	697
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	664, 705
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	165, 699
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	6 cut(s)	106, 134, 246, 273, 572, 717
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	6 cut(s)	102, 130, 242, 269, 568, 713
Fnu4HI	GCNGC	2 cut(s)	46, 480
FokI	GGATG	2 cut(s)	266, 507
FriOI	GRGCYC	2 cut(s)	165, 699
Fsp4HI	GCNGC	2 cut(s)	46, 480
FspBI	CTAG	1 cut(s)	470
GluI	GCNGC	2 cut(s)	46, 480
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	728
HaeIII	GGCC	3 cut(s)	76, 150, 675
HapII	CCGG	3 cut(s)	147, 188, 636
Hin1II	CATG	6 cut(s)	106, 134, 246, 273, 572, 717
HinfI	GANTC	5 cut(s)	98, 143, 289, 414, 710
HpaII	CCGG	3 cut(s)	147, 188, 636
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	111, 393
Hpy188III	TCNNGA	3 cut(s)	169, 188, 744
HpyAV	CCTTC	2 cut(s)	223, 276
HpyCH4III	ACNGT	5 cut(s)	40, 52, 69, 254, 589
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	2 cut(s)	352, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 608
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	6 cut(s)	106, 134, 246, 273, 572, 717
Kpn2I	TCCGGA	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	111, 229
Lsp1109I	GCAGC	2 cut(s)	57, 466
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	238, 245
MboII	GAAGA	5 cut(s)	17, 169, 320, 719, 732
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	165, 699
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	4 cut(s)	18, 304, 508, 528
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	2 cut(s)	107, 719
MmeI	TCCRAC	1 cut(s)	113
Mox20I	TGGCCA	1 cut(s)	675
MroI	TCCGGA	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	2 cut(s)	507, 654
Msp20I	TGGCCA	1 cut(s)	675
MspI	CCGG	3 cut(s)	147, 188, 636
MspR9I	CCNGG	2 cut(s)	666, 707
MunI	CAATTG	1 cut(s)	18
MvaI	CCWGG	2 cut(s)	666, 707
MwoI	GCNNNNNNNGC	2 cut(s)	147, 608
NcoI	CCATGG	1 cut(s)	102
NlaIII	CATG	6 cut(s)	106, 134, 246, 273, 572, 717
NlaIV	GGNNCC	1 cut(s)	430
NmeAIII	GCCGAG	1 cut(s)	52
NspI	RCATGY	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	597
PciI	ACATGT	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	143, 289, 414
PkrI	GCNGC	2 cut(s)	47, 481
PleI	GAGTC	2 cut(s)	106, 718
PpsI	GAGTC	2 cut(s)	106, 718
PpuMI	RGGWCCY	1 cut(s)	614
PscI	ACATGT	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	664, 705
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	2 cut(s)	664, 705
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	3 cut(s)	149, 210, 614
PspPPI	RGGWCCY	1 cut(s)	614
PsrI	GAACNNNNNNTAC	2 cut(s)	238, 270
PstI	CTGCAG	1 cut(s)	484
SacI	GAGCTC	1 cut(s)	699
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	507, 654
SatI	GCNGC	2 cut(s)	46, 480
Sau96I	GGNCC	3 cut(s)	149, 210, 614
SchI	GAGTC	2 cut(s)	107, 719
ScrFI	CCNGG	2 cut(s)	666, 707
SduI	GDGCHC	2 cut(s)	165, 699
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	2 cut(s)	480, 731
SfuI	TTCGAA	1 cut(s)	597
SinI	GGWCC	2 cut(s)	210, 614
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	4 cut(s)	18, 304, 508, 528
SspMI	CTAG	1 cut(s)	470
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	2 cut(s)	664, 705
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	5 cut(s)	40, 52, 69, 254, 589
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	597
TasI	AATT	4 cut(s)	18, 304, 508, 528
TfiI	GAWTC	3 cut(s)	143, 289, 414
Tru1I	TTAA	2 cut(s)	507, 654
Tru9I	TTAA	2 cut(s)	507, 654
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	2 cut(s)	45, 479
TspDTI	ATGAA	5 cut(s)	49, 119, 258, 333, 501
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	210, 614
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.