Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000237.1

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Reverse (-)

100407 .. 100722

Gene Structure 316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000237.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ctgatacatatacatgtgcagacacctatcttgtggtctcatgggattgctgacaaaactgtcttgttcgaagctggacaagcaggtcctcctttccttgaacaagccggtgtaagctgtgagtttaaggcttatcctggtcttggccattccataagcaacgatgagctcaagcacctggagtcatggataaaacctcgtctacagagttcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

72

Amino Acids

7.92

Weight (kDa)

6.18

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	59, 84
Acc36I	ACCTGC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	2 cut(s)	136, 177
AluBI	AGCT	3 cut(s)	74, 117, 169
AluI	AGCT	3 cut(s)	74, 117, 169
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	42
AoxI	GGCC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BciT130I	CCWGG	2 cut(s)	138, 179
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	74
Bme1390I	CCNGG	2 cut(s)	138, 179
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	138, 179
BpmI	CTGGAG	1 cut(s)	200
Bpu14I	TTCGAA	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	107
BseBI	CCWGG	2 cut(s)	138, 179
BseLI	CCNNNNNNNGG	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	147
Bso31I	GGTCTC	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	74
BspT104I	TTCGAA	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	138, 179
Bst4CI	ACNGT	1 cut(s)	61
BstBI	TTCGAA	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	138, 179
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	136, 177
BstSFI	CTRYAG	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	86
CviAII	CATG	3 cut(s)	14, 41, 186
CviJI	RGCY	6 cut(s)	74, 107, 117, 131, 147, 169
CviKI_1	RGCY	6 cut(s)	74, 107, 117, 131, 147, 169
DrdI	GACNNNNNNGTC	2 cut(s)	59, 84
DseDI	GACNNNNNNGTC	2 cut(s)	59, 84
EaeI	YGGCCR	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	136, 177
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	3 cut(s)	17, 44, 189
FaiI	YATR	6 cut(s)	9, 11, 15, 42, 155, 187
FatI	CATG	3 cut(s)	13, 40, 185
FblI	GTMKAC	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	3 cut(s)	17, 44, 189
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	17, 44, 189
LpnPI	CCDG	7 cut(s)	60, 69, 121, 123, 150, 164, 191
MboII	GAAGA	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	2 cut(s)	99, 207
Mox20I	TGGCCA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	147
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	138, 179
MvaI	CCWGG	2 cut(s)	138, 179
MwoI	GCNNNNNNNGC	1 cut(s)	80
NlaIII	CATG	3 cut(s)	17, 44, 189
NspI	RCATGY	1 cut(s)	17
NspV	TTCGAA	1 cut(s)	69
PciI	ACATGT	1 cut(s)	13
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	86
PscI	ACATGT	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	136, 177
PspGI	CCWGG	2 cut(s)	136, 177
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	138, 179
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	7 cut(s)	28, 76, 88, 119, 171, 180, 199
SfcI	CTRYAG	1 cut(s)	203
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	136, 177
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	86
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.