Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Forward (+)

553525 .. 555918

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCTAATAGCAAAGCCAACTGCTGCTCTTCTTATCGCCACCCTCAGTAGCACTGTTTTGTTCATACTACTCTCCTCCCGGCCAAACCTTTCTCCAAGACCAGACTCGATGGCTCGCAGCTTCGTTCTCTGGCTTCATGGGTTGGGCGATTCCGGCCCAGCCAACGAGCCCATCAAGACCCTCTTCACCTCCCCGGAGTTTCGGAACACCATCTGGTCCTTCCCATCTGCTCCCTCAATCCCAGTCACATGCAACTACGGTGCTGTGATGCCTTCATGGTTTGACATCCACGAGATTCCTATAACTGCTAATTCTCCAAAAGATGAAAGTGGTCTTCTCAAAGCAGTTAGGAACGTGCATAAGATGATAGACAAGGAGATTGCTGCTGGCACTAATCCTAAAAATGTGTTTGTGTGTGGATTCAGTCAAGGAGGTGCGTTGACATTGGCAAGTGCTCTGCTATACCCTCAAACACTAGGTGGTGCTGCAGTCTTTAGTGGATGGCTTCCTTTTAATTCATCTATAATACAACAAATTCCCCCAGAGGCAAAGAGGACACCTATTTTGTGGTCTCATGGGATTGATGACAGAACCGTAATGTTTGAAGCTGGACAAGCAGGTCCTCCTTTCCTTGAACAAGCTGGTGTAAGCTGCGAGTTTAAGGCTTATCCTGGTCTTGCCCATTCAATAAGCAATGATGAGCTCAAGCACCTGGAGTCATGGATCAAAACTCGTCTAAATAGTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

251

Amino Acids

27.01

Weight (kDa)

7.01

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	34 - 244	8.1e-49	Phospholipase/Carboxylesterase
DLH	PF01738	129 - 234	6.7e-10	Dienelactone hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	618
Acc36I	ACCTGC	1 cut(s)	608
AclWI	GGATC	1 cut(s)	731
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	534
AdeI	CACNNNGTG	1 cut(s)	479
AgsI	TTSAA	3 cut(s)	605, 635, 687
AjnI	CCWGG	2 cut(s)	670, 711
AluBI	AGCT	5 cut(s)	120, 608, 641, 651, 703
AluI	AGCT	5 cut(s)	120, 608, 641, 651, 703
Alw21I	GWGCWC	2 cut(s)	457, 705
Alw26I	GTCTC	1 cut(s)	576
AlwI	GGATC	1 cut(s)	731
AoxI	GGCC	2 cut(s)	80, 154
ApeKI	GCWGC	5 cut(s)	23, 117, 383, 485, 651
ApoI	RAATTY	1 cut(s)	534
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AspS9I	GGNCC	3 cut(s)	155, 216, 620
AsuC2I	CCSGG	2 cut(s)	79, 194
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	2 cut(s)	216, 620
BanII	GRGCYC	2 cut(s)	171, 705
BauI	CACGAG	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	2 cut(s)	457, 705
BbvI	GCAGC	5 cut(s)	10, 129, 370, 472, 638
BccI	CCATC	5 cut(s)	103, 179, 218, 232, 495
BciT130I	CCWGG	2 cut(s)	672, 713
BcnI	CCSGG	2 cut(s)	79, 194
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	486
BfuAI	ACCTGC	1 cut(s)	608
BisI	GCNGC	5 cut(s)	24, 118, 384, 486, 652
BlsI	GCNGC	5 cut(s)	25, 119, 385, 487, 653
Bme1390I	CCNGG	4 cut(s)	79, 194, 672, 713
Bme18I	GGWCC	2 cut(s)	216, 620
BmgT120I	GGNCC	3 cut(s)	155, 216, 620
BmrFI	CCNGG	4 cut(s)	79, 194, 672, 713
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	2 cut(s)	79, 194
BsaI	GGTCTC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	700
BseBI	CCWGG	2 cut(s)	672, 713
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	285, 506
BseMI	GCAATG	1 cut(s)	700
BseMII	CTCAG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	5 cut(s)	10, 129, 370, 472, 638
BseYI	CCCAGC	1 cut(s)	157
BshFI	GGCC	2 cut(s)	82, 156
BsiHKAI	GWGCWC	2 cut(s)	457, 705
BsiSI	CCGG	3 cut(s)	79, 153, 194
BsmAI	GTCTC	1 cut(s)	576
BsnI	GGCC	2 cut(s)	82, 156
Bso31I	GGTCTC	1 cut(s)	576
Bsp1286I	GDGCHC	3 cut(s)	171, 457, 705
Bsp143I	GATC	1 cut(s)	723
BspANI	GGCC	2 cut(s)	82, 156
BspCNI	CTCAG	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	608
BspPI	GGATC	1 cut(s)	731
BspQI	GCTCTTC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	723
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	672, 713
Bst4CI	ACNGT	3 cut(s)	55, 260, 595
Bst6I	CTCTTC	2 cut(s)	33, 188
BstC8I	GCNNGC	2 cut(s)	115, 388
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	285, 506
BstKTI	GATC	1 cut(s)	726
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	1 cut(s)	723
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 614
BstNI	CCWGG	2 cut(s)	672, 713
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	4 cut(s)	77, 192, 670, 711
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	5 cut(s)	10, 129, 370, 472, 638
BstV2I	GAAGAC	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	82, 156
BtsCI	GGATG	2 cut(s)	285, 506
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	2 cut(s)	115, 388
Cfr13I	GGNCC	3 cut(s)	155, 216, 620
CviAII	CATG	5 cut(s)	137, 249, 276, 575, 720
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	1 cut(s)	725
DpnII	GATC	1 cut(s)	723
DraIII	CACNNNGTG	1 cut(s)	479
DrdI	GACNNNNNNGTC	1 cut(s)	618
DseDI	GACNNNNNNGTC	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	2 cut(s)	33, 188
EarI	CTCTTC	2 cut(s)	33, 188
Ecl136II	GAGCTC	1 cut(s)	703
Eco24I	GRGCYC	2 cut(s)	171, 705
Eco31I	GGTCTC	1 cut(s)	576
Eco47I	GGWCC	2 cut(s)	216, 620
Eco53kI	GAGCTC	1 cut(s)	703
EcoICRI	GAGCTC	1 cut(s)	703
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	2 cut(s)	670, 711
EcoT38I	GRGCYC	2 cut(s)	171, 705
FaeI	CATG	5 cut(s)	140, 252, 279, 578, 723
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	5 cut(s)	136, 248, 275, 574, 719
Fnu4HI	GCNGC	5 cut(s)	24, 118, 384, 486, 652
FokI	GGATG	2 cut(s)	272, 513
FriOI	GRGCYC	2 cut(s)	171, 705
Fsp4HI	GCNGC	5 cut(s)	24, 118, 384, 486, 652
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	5 cut(s)	24, 118, 384, 486, 652
GsaI	CCCAGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	2 cut(s)	82, 156
HapII	CCGG	3 cut(s)	79, 153, 194
Hin1II	CATG	5 cut(s)	140, 252, 279, 578, 723
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	5 cut(s)	104, 149, 295, 420, 716
HpaII	CCGG	3 cut(s)	79, 153, 194
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	2 cut(s)	175, 750
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	2 cut(s)	229, 282
HpyCH4III	ACNGT	3 cut(s)	55, 260, 595
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	252, 358, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 614
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	5 cut(s)	140, 252, 279, 578, 723
Kzo9I	GATC	1 cut(s)	723
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	5 cut(s)	10, 129, 370, 472, 638
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	1 cut(s)	725
MboI	GATC	1 cut(s)	723
MboII	GAAGA	4 cut(s)	20, 175, 326, 738
MhlI	GDGCHC	3 cut(s)	171, 457, 705
MluCI	AATT	3 cut(s)	310, 514, 534
MlyI	GAGTC	2 cut(s)	98, 725
MseI	TTAA	2 cut(s)	513, 660
MspI	CCGG	3 cut(s)	79, 153, 194
MspR9I	CCNGG	4 cut(s)	79, 194, 672, 713
MvaI	CCWGG	2 cut(s)	672, 713
MwoI	GCNNNNNNNGC	2 cut(s)	153, 614
NciI	CCSGG	2 cut(s)	79, 194
NdeII	GATC	1 cut(s)	723
NlaIII	CATG	5 cut(s)	140, 252, 279, 578, 723
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	149, 295, 420
PkrI	GCNGC	5 cut(s)	25, 119, 385, 487, 653
PleI	GAGTC	2 cut(s)	98, 724
PpsI	GAGTC	2 cut(s)	98, 724
PpuMI	RGGWCCY	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	2 cut(s)	670, 711
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	2 cut(s)	670, 711
PspPI	GGNCC	3 cut(s)	155, 216, 620
PspPPI	RGGWCCY	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	490
SacI	GAGCTC	1 cut(s)	705
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	513, 660
SatI	GCNGC	5 cut(s)	24, 118, 384, 486, 652
Sau3AI	GATC	1 cut(s)	723
Sau96I	GGNCC	3 cut(s)	155, 216, 620
SchI	GAGTC	2 cut(s)	98, 725
ScrFI	CCNGG	4 cut(s)	79, 194, 672, 713
SduI	GDGCHC	3 cut(s)	171, 457, 705
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	2 cut(s)	216, 620
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	3 cut(s)	310, 514, 534
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	705
StyD4I	CCNGG	4 cut(s)	77, 192, 670, 711
TaaI	ACNGT	3 cut(s)	55, 260, 595
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	107
TasI	AATT	3 cut(s)	310, 514, 534
TfiI	GAWTC	3 cut(s)	149, 295, 420
Tru1I	TTAA	2 cut(s)	513, 660
Tru9I	TTAA	2 cut(s)	513, 660
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	5 cut(s)	23, 117, 383, 485, 651
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	5 cut(s)	52, 125, 264, 339, 507
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	216, 620
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	1 cut(s)	252
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.