Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Reverse (-)

11789327 .. 11791207

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22305.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTCGAACTTTCATCTTGTGGCTTCACGGGTTGGGAGATTCTGGACCTGCTAATGAACCCATCCAAACTCAATTCAAATCCTCGGAGTTAAGTAACGCTAGTTGGCTCTTCCCTTCTGCTCCATTCAATCCGGTTACCTGCAACAATGGTGCGGTGATGCGTTCTTGGTTTGACGTTCCTGAACTTCCTTTTAAAGTGGGCTCTCCAATTGATGAAAGCAGCGTGCTTGAAGCAGTTAAGAATGTTCATGCCATTATAGACCAGGAGATTGCAGAAGGAACTAATCCAGAAAACGTGTTTATCTGTGGATTAAGCCAAGGAGGAGCATTAACCTTGGCTAGTGTTCTGCTTTACCCAAAAACTCTTGGAGGAGGTGCCGTCCTAAGTGGATGGGTTCCATTCACTTCTTCAATCATCAGTCAGTTTCCCGAAGAGGCTAAGAAGACACCAATCTTGTGGTCTCATGGCACTGATGACAGAATGGTACTCTTTGAAGCTGGTCAAGCTGCTCTTCCTTTTCTCAAAGAAGCCGGTGTTACCTGTGAATTCAAGGCATATCCTGGTCTCGGGCACTCGATCAGCAATAAGGAGCTGAAGTATATAGAGTCATGGATCAAGAGACGGTTGAAAGGTTCGTCGTCTACTTGTCTCCAACTTAATTGTCTTAAAGAAATGTTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

228

Amino Acids

24.85

Weight (kDa)

5.75

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	3 - 207	4.3e-46	Phospholipase/Carboxylesterase
DLH	PF01738	78 - 199	4.1e-07	Dienelactone hydrolase family
Peptidase_S9	PF00326	143 - 210	9.3e-06	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	58, 149
AccB1I	GGYRCC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	644
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	623
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	569
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	7 cut(s)	79, 130, 233, 414, 497, 553, 631
AjnI	CCWGG	2 cut(s)	264, 562
AluBI	AGCT	3 cut(s)	500, 509, 595
AluI	AGCT	3 cut(s)	500, 509, 595
Alw26I	GTCTC	4 cut(s)	468, 572, 616, 656
AlwI	GGATC	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	222, 509
ApoI	RAATTY	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	234, 496
BccI	CCATC	2 cut(s)	71, 387
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	2 cut(s)	266, 564
BcoDI	GTCTC	4 cut(s)	468, 572, 616, 656
BfaI	CTAG	2 cut(s)	102, 342
BfuAI	ACCTGC	2 cut(s)	58, 149
BisI	GCNGC	2 cut(s)	223, 510
BlsI	GCNGC	2 cut(s)	224, 511
Bme1390I	CCNGG	2 cut(s)	266, 564
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	379, 399
BmrFI	CCNGG	2 cut(s)	266, 564
BmsI	GCATC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	452
BsaI	GGTCTC	2 cut(s)	468, 572
BsaJI	CCNNGG	3 cut(s)	84, 319, 336
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 396, 584, 614
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
Bse118I	RCCGGY	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	266, 564
BseDI	CCNNGG	3 cut(s)	84, 319, 336
BseGI	GGATG	2 cut(s)	63, 398
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseRI	GAGGAG	2 cut(s)	339, 387
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	234, 496
BshNI	GGYRCC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	134, 534
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmAI	GTCTC	4 cut(s)	468, 572, 616, 656
BsmBI	CGTCTC	1 cut(s)	616
Bso31I	GGTCTC	2 cut(s)	468, 572
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	206, 576
Bsp143I	GATC	2 cut(s)	579, 615
BspACI	CCGC	1 cut(s)	155
BspLI	GGNNCC	2 cut(s)	379, 399
BspMI	ACCTGC	2 cut(s)	58, 149
BspPI	GGATC	1 cut(s)	623
BspQI	GCTCTTC	2 cut(s)	116, 519
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	2 cut(s)	468, 572
BsrFI	RCCGGY	1 cut(s)	533
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	3 cut(s)	84, 319, 336
BssMI	GATC	2 cut(s)	579, 615
BssT1I	CCWWGG	2 cut(s)	319, 336
Bst2UI	CCWGG	2 cut(s)	266, 564
Bst4CI	ACNGT	1 cut(s)	627
Bst6I	CTCTTC	3 cut(s)	116, 429, 519
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	386, 441
BstEII	GGTNACC	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	63, 398
BstKTI	GATC	2 cut(s)	582, 618
BstMAI	GTCTC	4 cut(s)	468, 572, 616, 656
BstMBI	GATC	2 cut(s)	579, 615
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNI	CCWGG	2 cut(s)	266, 564
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	264, 562
BstSLI	GKGCMC	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	234, 496
BstV2I	GAAGAC	1 cut(s)	452
BstXI	CCANNNNNNTGG	1 cut(s)	459
BtsCI	GGATG	2 cut(s)	63, 398
BtsIMutI	CAGTG	2 cut(s)	471, 682
BveI	ACCTGC	2 cut(s)	58, 149
Cac8I	GCNNGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	3 cut(s)	251, 467, 612
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	2 cut(s)	386, 441
DpnI	GATC	2 cut(s)	581, 617
DpnII	GATC	2 cut(s)	579, 615
DraI	TTTAAA	1 cut(s)	196
Eam1104I	CTCTTC	3 cut(s)	116, 429, 519
EarI	CTCTTC	3 cut(s)	116, 429, 519
Eco130I	CCWWGG	2 cut(s)	319, 336
Eco24I	GRGCYC	1 cut(s)	206
Eco31I	GGTCTC	2 cut(s)	468, 572
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	569
Eco91I	GGTNACC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	264, 562
EcoT14I	CCWWGG	2 cut(s)	319, 336
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	2 cut(s)	319, 336
Esp3I	CGTCTC	1 cut(s)	616
FaeI	CATG	3 cut(s)	254, 470, 615
FaiI	YATR	7 cut(s)	252, 260, 468, 559, 603, 605, 613
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FatI	CATG	3 cut(s)	250, 466, 611
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	2 cut(s)	223, 510
FokI	GGATG	2 cut(s)	50, 405
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	223, 510
FspBI	CTAG	2 cut(s)	102, 342
GluI	GCNGC	2 cut(s)	223, 510
HapII	CCGG	2 cut(s)	134, 534
Hin1II	CATG	3 cut(s)	254, 470, 615
HinfI	GANTC	2 cut(s)	41, 608
HpaII	CCGG	2 cut(s)	134, 534
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	5 cut(s)	45, 182, 290, 431, 619
Hpy8I	GTNNAC	1 cut(s)	645
Hpy99I	CGWCG	1 cut(s)	643
HpyAV	CCTTC	2 cut(s)	126, 272
HpyCH4III	ACNGT	1 cut(s)	627
HpyCH4IV	ACGT	2 cut(s)	177, 297
HpyCH4V	TGCA	2 cut(s)	144, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	2 cut(s)	386, 441
HpySE526I	ACGT	2 cut(s)	177, 297
Hsp92II	CATG	3 cut(s)	254, 470, 615
Kzo9I	GATC	2 cut(s)	579, 615
LguI	GCTCTTC	2 cut(s)	116, 519
LmnI	GCTCC	3 cut(s)	127, 326, 592
Lsp1109I	GCAGC	2 cut(s)	234, 496
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	102, 342
MaeII	ACGT	2 cut(s)	177, 297
MaeIII	GTNAC	3 cut(s)	95, 136, 538
MalI	GATC	2 cut(s)	581, 617
MboI	GATC	2 cut(s)	579, 615
MboII	GAAGA	5 cut(s)	103, 402, 446, 457, 506
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	206, 576
MluCI	AATT	4 cut(s)	74, 210, 548, 661
MlyI	GAGTC	1 cut(s)	617
MmeI	TCCRAC	1 cut(s)	679
MnlI	CCTC	5 cut(s)	94, 317, 365, 368, 430
MseI	TTAA	7 cut(s)	92, 195, 240, 314, 332, 660, 669
MspI	CCGG	2 cut(s)	134, 534
MspR9I	CCNGG	2 cut(s)	266, 564
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	2 cut(s)	266, 564
MwoI	GCNNNNNNNGC	1 cut(s)	506
NdeII	GATC	2 cut(s)	579, 615
NlaIII	CATG	3 cut(s)	254, 470, 615
NlaIV	GGNNCC	2 cut(s)	379, 399
PciSI	GCTCTTC	2 cut(s)	116, 519
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	224, 511
PleI	GAGTC	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	264, 562
PspEI	GGTNACC	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	264, 562
PspN4I	GGNNCC	2 cut(s)	379, 399
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SapI	GCTCTTC	2 cut(s)	116, 519
SaqAI	TTAA	7 cut(s)	92, 195, 240, 314, 332, 660, 669
SatI	GCNGC	2 cut(s)	223, 510
Sau3AI	GATC	2 cut(s)	579, 615
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	617
ScrFI	CCNGG	2 cut(s)	266, 564
SduI	GDGCHC	2 cut(s)	206, 576
SfaNI	GCATC	1 cut(s)	150
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	4 cut(s)	74, 210, 548, 661
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	102, 342
StyD4I	CCNGG	2 cut(s)	264, 562
StyI	CCWWGG	2 cut(s)	319, 336
TaaI	ACNGT	1 cut(s)	627
TaiI	ACGT	2 cut(s)	180, 300
TaqI	TCGA	2 cut(s)	7, 578
TasI	AATT	4 cut(s)	74, 210, 548, 661
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	7 cut(s)	92, 195, 240, 314, 332, 660, 669
Tru9I	TTAA	7 cut(s)	92, 195, 240, 314, 332, 660, 669
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	2 cut(s)	222, 509
TspDTI	ATGAA	4 cut(s)	4, 72, 231, 239
TspRI	CASTG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	644
XspI	CTAG	2 cut(s)	102, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.