Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007899

Physical Location & Seq

Genomic Coordinates Forward (+)

92049469 .. 92051520

Gene Structure 2052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCCTTCATGGTTTGACATCCACGAGATTCCTATAACAGTTAATTCTCCAAAAGATGAAAGTGGTCTTCTCAAAGCAGTTAGGAACGTGCATAAGATGATAGACAAGGAGATAGCTGACGGCACTAATCCGAAAAATGTGTTTGTGTGTGGATTCAGTCAAGGAGGTGCCTTGACATTGGCAAGTGTTCTGCTATACCCTCAAACACTAGGAGGTGCTGCAGTCTTTAGTGGATGGCTTCCTTTTAATTCATCTATAATACAACAAATTAGCCCAGAGGCAAAGAGGACACCTATCTTGTGGTCTCATGGGATTGCTGACAAAACTGTCTTGTTCGAAGCTGGACAAGCAGGTCCTCCTTTCCTTGAACAAGCCGGTGTAAGCTGTGAGTTTAAGGCTTATCCTGGTCTTGGCCATTCCATAAGCAACGATGAGCTCAAGCACCTGGAGTCGTGGATAAAACCTCGTCTACAGAGTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002084 GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006629 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008474 GO:0008610 GO:0008654 GO:0009056 GO:0009057 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010363 GO:0010941 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019538 GO:0019637 GO:0030163 GO:0031347 GO:0034338 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0042742 GO:0043067 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045017 GO:0045087 GO:0045088 GO:0046473 GO:0046474 GO:0046486 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0090407 GO:0098542 GO:0098599 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Abhydrolase_2

Protein Analysis

161

Amino Acids

17.46

Weight (kDa)

6.18

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_2	PF02230	1 - 154	1.2e-34	Phospholipase/Carboxylesterase
DLH	PF01738	35 - 145	3.9e-10	Dienelactone hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18773 AT1G18773 AT1G18773 AT1G18773 AT4G22300 AT4G22305 AT4G22305
fragaria_vesca	FvH4_3g01110
malus_domestica	MD05G1356600.v1.1
prunus_persica	Prupe.4G012400_v2.0.a1 Prupe.4G012400_v2.0.a1
pyrus_communis	pycom05g32260
rosa_chinensis	RchiOBHm_Chr5g0001681
rosa_laevigata	RLG00000030955
rosa_multiflora	Rmu_sc0005595.1_g000001 Rmu_ssc0000237.1_g000026
rosa_roxburghii	Rroxscaffold_1G00071140 Rroxscaffold_1G00074650
rosa_rugosa	Rorug04G0391800
rosa_samantha	Rh5AG013200 Rh5BG016600 Rh5CG014200 Rh5DG014600
rosa_wichuraiana	Rw5G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	326, 351
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	469
AcoI	YGGCCR	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	403, 444
AluBI	AGCT	4 cut(s)	116, 341, 384, 436
AluI	AGCT	4 cut(s)	116, 341, 384, 436
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	309
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	353
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	405, 446
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	1 cut(s)	209
BfmI	CTRYAG	2 cut(s)	219, 470
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	405, 446
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	2 cut(s)	405, 446
BpiI	GAAGAC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	467
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	405, 446
BseGI	GGATG	2 cut(s)	18, 239
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	414
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	438
BspANI	GGCC	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	341
BspT104I	TTCGAA	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	374
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	2 cut(s)	405, 446
Bst4CI	ACNGT	2 cut(s)	40, 328
BstBI	TTCGAA	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	18, 239
BstMAI	GTCTC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	2 cut(s)	405, 446
BstSCI	CCNGG	2 cut(s)	403, 444
BstSFI	CTRYAG	2 cut(s)	219, 470
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	18, 239
BveI	ACCTGC	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	353
CviAII	CATG	2 cut(s)	9, 308
CviJI	RGCY	9 cut(s)	116, 238, 273, 341, 374, 384, 398, 414, 436
CviKI_1	RGCY	9 cut(s)	116, 238, 273, 341, 374, 384, 398, 414, 436
DrdI	GACNNNNNNGTC	2 cut(s)	326, 351
DseDI	GACNNNNNNGTC	2 cut(s)	326, 351
EaeI	YGGCCR	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	403, 444
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	2 cut(s)	12, 311
FaiI	YATR	7 cut(s)	10, 35, 93, 196, 257, 309, 422
FatI	CATG	2 cut(s)	8, 307
FblI	GTMKAC	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	2 cut(s)	5, 246
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	2 cut(s)	12, 311
HinfI	GANTC	3 cut(s)	28, 153, 449
HpaII	CCGG	1 cut(s)	375
Hpy166II	GTNNAC	1 cut(s)	470
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	483
Hpy8I	GTNNAC	1 cut(s)	470
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	2 cut(s)	40, 328
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	91, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	12, 311
LpnPI	CCDG	8 cut(s)	288, 327, 336, 388, 390, 417, 431, 458
Lsp1109I	GCAGC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	87
MboII	GAAGA	2 cut(s)	59, 471
MhlI	GDGCHC	1 cut(s)	438
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	3 cut(s)	43, 247, 267
MluNI	TGGCCA	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	458
MnlI	CCTC	7 cut(s)	158, 206, 210, 271, 279, 366, 474
Mox20I	TGGCCA	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	414
MseI	TTAA	3 cut(s)	42, 246, 393
Msp20I	TGGCCA	1 cut(s)	414
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	2 cut(s)	405, 446
MvaI	CCWGG	2 cut(s)	405, 446
MwoI	GCNNNNNNNGC	1 cut(s)	347
NlaIII	CATG	2 cut(s)	12, 311
NlaIV	GGNNCC	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	28, 153
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	403, 444
PspGI	CCWGG	2 cut(s)	403, 444
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	353
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	223
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	42, 246, 393
SatI	GCNGC	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	2 cut(s)	405, 446
SduI	GDGCHC	1 cut(s)	438
SfcI	CTRYAG	2 cut(s)	219, 470
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	3 cut(s)	43, 247, 267
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	403, 444
TaaI	ACNGT	2 cut(s)	40, 328
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	336
TasI	AATT	3 cut(s)	43, 247, 267
TfiI	GAWTC	2 cut(s)	28, 153
Tru1I	TTAA	3 cut(s)	42, 246, 393
Tru9I	TTAA	3 cut(s)	42, 246, 393
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	72, 240
VpaK11BI	GGWCC	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	469
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.