Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002617

Physical Location & Seq

Genomic Coordinates Reverse (-)

11803768 .. 11807417

Gene Structure 3650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGAAAGGTGAAAGAGAAGTGAAGAATGGTGTTTCTGAGGAAGAGAGAGAGGTGAAGAGGAAGAGAGTGATGGAACGGTCTGATTCGCCACCTCCACCACTAGTTGCGAAAGGAGAGGGAAATGGTAACAAAGTGAAAGGAGAAGCTCAAGTAGAGGTCGATGACGACGAAGATGATGATGATGATGCTTCGAAGGGGAGAGGAAAGCATTCACGCCATGTTGAAGTTCGTCGTGATTGTCCTTATCTTGATACTGTTAATCGTCAGGTGTTGGATTTTGATTTCGAGAGGTTTTGCTCTGTCTCATTGTCAAATCTGAATGTGTATGCGTGTCTTGTTTGTGGGAAGTACTTTCAAGGAAGAAGCCAGAAGTCTCATGCTTATACACATAGCTTGGAAGCAGGACACCACGTTTACATCAATCTTCTGACAGAGAAGGTTTATTGTCTTCCTGATAGTTACGAGATCAATGACCCTTCTTTGGATGACATTCGCCATGTTTTAAACCCAAGGTTTAGTAGAGCACAAGTAAACGAGCTTGACAAGAATAGGCAGTGGTCTAGGGCTCTTGATGGCTCCGACTATCTTCCAGGAATGGTGGGGTTGAACAACATACAAAAGACAGAGTTTGTGAATGTTACAATCCAGTCGTTGATGAGAGTTACTCCTCTAAGGAATTTCTTCCTCATTCCTGAAAATTATCAGCACTGCAAGTCTCCTCTTGGTCACCGTTTTGGGGAACTAACTCGCAAGATTTGGCATGCTCGAAACTTTAAAGGACAAGTGAGTCCACATGAGTTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACGCTTTAGGATTGGCCAACAATCAGATCCAGTAGAGTTTATGTCGTGGCTCCTCAACACTTTGCACATGGATCTTAGAACTTCAAAGGACGCTAGCAGTATCATCCACAAGTGCTTCCAGGGTGAGTTGGAGGTTGTGAAAGAGTATCAAGGCAATGAAAACAAAGAAATCTCCAGGATGCCGTTTCTGATGCTTGGGCTAGATTTGCCACCGCCTCCTCTTTTCAAAGATGTCATGGAGAAAAACATTATTCCGCAGGTTGCTCTATTCGATTTATTGAAGAAGTTTGATGGAGAAACGGTGACAGAGGTGGTTCGGCCTAAGCTGGCCAGAATGAGATACCGTGTAATCAAATCTCCTCGTTACTTGATGTTCCATATGGTTCGGTTCAAGAAGAATAACTTCTTCAAAGAGAAGAACCCTACATTGGTTAACTTCCCAGTGAAGGACATGGAGCTGAGGGATTACATACCATCATTGCCTAGAGCACCAGAAGGGGAGAATGTGTGTTCAAAGTATAATCTAATCGCTAACATTGTACATGATGGTAAGCCTGAGGACGGGTACTTCAGAGTCTTTGTGCAGCGCAAGTCACAAGAACTATGGTACGAGATGCAGGATCTTCATGTTGCAGAGACACTTCCCCAGATGGTAGAACTATCGGAAGCATACATGCAGATATATGAGCAGCAGGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

510

Amino Acids

59.43

Weight (kDa)

6.98

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP	PF02148	99 - 160	1.6e-19	Zn-finger in ubiquitin-hydrolases and other protein
UCH	PF00443	200 - 505	2.3e-39	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22285 AT4G22285 AT4G22350 AT4G22350 AT4G22350 AT4G22350 AT4G22410 AT4G22410
fragaria_vesca	FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_6g03150
malus_domestica	MD05G1357700.v1.1 MD10G1331700.v1.1
prunus_persica	Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1
pyrus_communis	pycom05g32360 pycom10g28130
rosa_chinensis	RchiOBHm_Chr4g0397451 RchiOBHm_Chr5g0001501 RchiOBHm_Chr5g0001511
rosa_laevigata	RLG00000030934
rosa_multiflora	Rmu_sc0003749.1_g000009
rosa_roxburghii	Rroxscaffold_1G00074880
rosa_rugosa	Rorug04G0390700
rosa_samantha	Rh5AG011700 Rh5BG014200 Rh5CG012700 Rh5DG012000
rosa_wichuraiana	Rw5G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	786
Acc36I	ACCTGC	1 cut(s)	1078
AciI	CCGC	2 cut(s)	1043, 1085
AclWI	GGATC	3 cut(s)	851, 909, 1458
AcoI	YGGCCR	2 cut(s)	844, 1158
AcsI	RAATTY	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	1384
AfaI	GTAC	4 cut(s)	350, 1371, 1397, 1439
AfiI	CCNNNNNNNGG	5 cut(s)	481, 736, 1258, 1276, 1391
AgsI	TTSAA	9 cut(s)	224, 356, 607, 915, 1057, 1111, 1222, 1240, 1344
AhlI	ACTAGT	1 cut(s)	100
AjnI	CCWGG	3 cut(s)	589, 948, 1004
AjuI	GAANNNNNNNTTGG	2 cut(s)	1241, 1273
AluBI	AGCT	6 cut(s)	146, 393, 538, 809, 1156, 1288
AluI	AGCT	6 cut(s)	146, 393, 538, 809, 1156, 1288
Alw21I	GWGCWC	2 cut(s)	526, 1321
Alw26I	GTCTC	4 cut(s)	307, 378, 720, 1460
AlwI	GGATC	3 cut(s)	851, 909, 1458
AoxI	GGCC	3 cut(s)	844, 1148, 1158
ApeKI	GCWGC	2 cut(s)	1414, 1519
ApoI	RAATTY	1 cut(s)	676
Asp700I	GAANNNNTTC	3 cut(s)	208, 680, 1232
AspLEI	GCGC	1 cut(s)	1419
AsuHPI	GGTGA	5 cut(s)	20, 64, 719, 965, 1144
AsuII	TTCGAA	1 cut(s)	191
AsuNHI	GCTAGC	1 cut(s)	923
AxyI	CCTNAGG	1 cut(s)	1386
BalI	TGGCCA	2 cut(s)	846, 1160
BanII	GRGCYC	1 cut(s)	568
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	2 cut(s)	526, 1321
BbvCI	CCTCAGC	1 cut(s)	1289
BbvI	GCAGC	1 cut(s)	1426
BccI	CCATC	6 cut(s)	64, 566, 1115, 1312, 1370, 1474
BceAI	ACGGC	1 cut(s)	997
BciT130I	CCWGG	3 cut(s)	591, 950, 1006
BcoDI	GTCTC	4 cut(s)	307, 378, 720, 1460
BcuI	ACTAGT	1 cut(s)	100
BfaI	CTAG	5 cut(s)	101, 561, 924, 1031, 1314
BfuAI	ACCTGC	1 cut(s)	1078
BisI	GCNGC	2 cut(s)	1415, 1520
BlsI	GCNGC	2 cut(s)	1416, 1521
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	3 cut(s)	591, 950, 1006
BmiI	GGNNCC	2 cut(s)	577, 881
BmrFI	CCNGG	3 cut(s)	591, 950, 1006
BmrI	ACTGGG	1 cut(s)	1265
BmsI	GCATC	4 cut(s)	175, 999, 1011, 1434
BmtI	GCTAGC	1 cut(s)	927
BmuI	ACTGGG	1 cut(s)	1265
BpiI	GAAGAC	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	649, 681
BpmI	CTGGAG	1 cut(s)	988
Bpu10I	CCTNAGC	2 cut(s)	1152, 1289
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	509, 949
BsaXI	ACNNNNNCTCC	4 cut(s)	1116, 1146, 1322, 1352
Bsc4I	CCNNNNNNNGG	5 cut(s)	481, 736, 1258, 1276, 1391
Bse1I	ACTGG	3 cut(s)	646, 860, 1271
Bse21I	CCTNAGG	1 cut(s)	1386
Bse3DI	GCAATG	2 cut(s)	991, 1307
BseBI	CCWGG	3 cut(s)	591, 950, 1006
BseDI	CCNNGG	2 cut(s)	509, 949
BseGI	GGATG	3 cut(s)	490, 933, 1014
BseLI	CCNNNNNNNGG	5 cut(s)	481, 736, 1258, 1276, 1391
BseMI	GCAATG	2 cut(s)	991, 1307
BseMII	CTCAG	3 cut(s)	27, 1280, 1377
BseNI	ACTGG	3 cut(s)	646, 860, 1271
BseRI	GAGGAG	5 cut(s)	657, 708, 872, 1038, 1179
BseXI	GCAGC	1 cut(s)	1426
BsgI	GTGCAG	1 cut(s)	1433
BshFI	GGCC	3 cut(s)	846, 1150, 1160
BsiHKAI	GWGCWC	2 cut(s)	526, 1321
BslI	CCNNNNNNNGG	5 cut(s)	481, 736, 1258, 1276, 1391
BsmAI	GTCTC	4 cut(s)	307, 378, 720, 1460
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	846, 1150, 1160
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	526, 568, 1321
Bsp1407I	TGTACA	1 cut(s)	1369
Bsp143I	GATC	4 cut(s)	465, 856, 901, 1450
BspACI	CCGC	2 cut(s)	1043, 1085
BspANI	GGCC	3 cut(s)	846, 1150, 1160
BspCNI	CTCAG	3 cut(s)	28, 1281, 1378
BspHI	TCATGA	1 cut(s)	813
BspLI	GGNNCC	2 cut(s)	577, 881
BspMI	ACCTGC	1 cut(s)	1078
BspOI	GCTAGC	1 cut(s)	927
BspPI	GGATC	3 cut(s)	851, 909, 1458
BspT104I	TTCGAA	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	991, 1307
BsrGI	TGTACA	1 cut(s)	1369
BsrI	ACTGG	3 cut(s)	646, 860, 1271
BssECI	CCNNGG	2 cut(s)	509, 949
BssMI	GATC	4 cut(s)	465, 856, 901, 1450
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	3 cut(s)	591, 950, 1006
Bst4CI	ACNGT	5 cut(s)	78, 256, 731, 1132, 1175
Bst6I	CTCTTC	3 cut(s)	36, 50, 56
BstAUI	TGTACA	1 cut(s)	1369
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	5 cut(s)	762, 807, 823, 925, 1158
BstDEI	CTNAG	6 cut(s)	36, 671, 905, 1152, 1289, 1386
BstEII	GGTNACC	1 cut(s)	725
BstF5I	GGATG	3 cut(s)	490, 933, 1014
BstHHI	GCGC	1 cut(s)	1419
BstKTI	GATC	4 cut(s)	468, 859, 904, 1453
BstMAI	GTCTC	4 cut(s)	307, 378, 720, 1460
BstMBI	GATC	4 cut(s)	465, 856, 901, 1450
BstMWI	GCNNNNNNNGC	2 cut(s)	831, 1036
BstNI	CCWGG	3 cut(s)	591, 950, 1006
BstNSI	RCATGY	2 cut(s)	764, 1507
BstPI	GGTNACC	1 cut(s)	725
BstSCI	CCNGG	3 cut(s)	589, 948, 1004
BstV1I	GCAGC	1 cut(s)	1426
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	3 cut(s)	856, 901, 1450
BstYI	RGATCY	3 cut(s)	856, 901, 1450
Bsu36I	CCTNAGG	1 cut(s)	1386
BsuRI	GGCC	3 cut(s)	846, 1150, 1160
BtsCI	GGATG	3 cut(s)	490, 933, 1014
BtsI	GCAGTG	2 cut(s)	560, 706
BtsIMutI	CAGTG	3 cut(s)	560, 706, 1278
BveI	ACCTGC	1 cut(s)	1078
Cac8I	GCNNGC	5 cut(s)	762, 807, 823, 925, 1158
CciI	TCATGA	1 cut(s)	813
CfoI	GCGC	1 cut(s)	1419
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	4 cut(s)	349, 1370, 1396, 1438
CviQI	GTAC	4 cut(s)	349, 1370, 1396, 1438
DdeI	CTNAG	6 cut(s)	36, 671, 905, 1152, 1289, 1386
DpnI	GATC	4 cut(s)	467, 858, 903, 1452
DpnII	GATC	4 cut(s)	465, 856, 901, 1450
DraI	TTTAAA	2 cut(s)	504, 775
DrdI	GACNNNNNNGTC	1 cut(s)	786
DseDI	GACNNNNNNGTC	1 cut(s)	786
EaeI	YGGCCR	2 cut(s)	844, 1158
Eam1104I	CTCTTC	3 cut(s)	36, 50, 56
EarI	CTCTTC	3 cut(s)	36, 50, 56
Eco130I	CCWWGG	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	1384
Eco81I	CCTNAGG	1 cut(s)	1386
Eco91I	GGTNACC	1 cut(s)	725
EcoO65I	GGTNACC	1 cut(s)	725
EcoRII	CCWGG	3 cut(s)	589, 948, 1004
EcoT14I	CCWWGG	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	509
FalI	AAGNNNNNCTT	4 cut(s)	818, 850, 1217, 1249
FauNDI	CATATG	1 cut(s)	1209
Fnu4HI	GCNGC	2 cut(s)	1415, 1520
FokI	GGATG	3 cut(s)	497, 920, 1021
FriOI	GRGCYC	1 cut(s)	568
Fsp4HI	GCNGC	2 cut(s)	1415, 1520
FspBI	CTAG	5 cut(s)	101, 561, 924, 1031, 1314
GlaI	GCGC	1 cut(s)	1418
GluI	GCNGC	2 cut(s)	1415, 1520
GsuI	CTGGAG	1 cut(s)	988
HaeIII	GGCC	3 cut(s)	846, 1150, 1160
HgaI	GACGC	1 cut(s)	929
HhaI	GCGC	1 cut(s)	1419
Hin6I	GCGC	1 cut(s)	1417
HinP1I	GCGC	1 cut(s)	1417
HincII	GTYRAC	1 cut(s)	1264
HindII	GTYRAC	1 cut(s)	1264
HinfI	GANTC	3 cut(s)	83, 787, 1404
HpaI	GTTAAC	1 cut(s)	1264
HphI	GGTGA	5 cut(s)	20, 64, 719, 965, 1144
Hpy166II	GTNNAC	4 cut(s)	415, 532, 791, 1264
Hpy188I	TCNGA	9 cut(s)	37, 82, 318, 429, 580, 856, 1020, 1403, 1495
Hpy188III	TCNNGA	8 cut(s)	233, 248, 286, 452, 569, 692, 814, 1222
Hpy8I	GTNNAC	4 cut(s)	415, 532, 791, 1264
Hpy99I	CGWCG	2 cut(s)	170, 234
HpyAV	CCTTC	5 cut(s)	187, 430, 486, 1270, 1319
HpyCH4III	ACNGT	5 cut(s)	78, 256, 731, 1132, 1175
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	7 cut(s)	711, 805, 895, 1414, 1447, 1463, 1507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	831, 1036
HpyF3I	CTNAG	6 cut(s)	36, 671, 905, 1152, 1289, 1386
HpySE526I	ACGT	1 cut(s)	411
HspAI	GCGC	1 cut(s)	1417
KspAI	GTTAAC	1 cut(s)	1264
Kzo9I	GATC	4 cut(s)	465, 856, 901, 1450
LmnI	GCTCC	3 cut(s)	581, 885, 1285
Lsp1109I	GCAGC	1 cut(s)	1426
LweI	GCATC	4 cut(s)	175, 999, 1011, 1434
MaeI	CTAG	5 cut(s)	101, 561, 924, 1031, 1314
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	8 cut(s)	125, 458, 637, 661, 725, 1132, 1193, 1422
MalI	GATC	4 cut(s)	467, 858, 903, 1452
MboI	GATC	4 cut(s)	465, 856, 901, 1450
MflI	RGATCY	3 cut(s)	856, 901, 1450
MhlI	GDGCHC	3 cut(s)	526, 568, 1321
MlsI	TGGCCA	2 cut(s)	846, 1160
MluCI	AATT	2 cut(s)	676, 697
MluNI	TGGCCA	2 cut(s)	846, 1160
MlyI	GAGTC	2 cut(s)	796, 1413
MmeI	TCCRAC	3 cut(s)	252, 603, 939
Mox20I	TGGCCA	2 cut(s)	846, 1160
MroXI	GAANNNNTTC	3 cut(s)	208, 680, 1232
MscI	TGGCCA	2 cut(s)	846, 1160
MseI	TTAA	4 cut(s)	258, 503, 774, 1263
Msp20I	TGGCCA	2 cut(s)	846, 1160
MspR9I	CCNGG	3 cut(s)	591, 950, 1006
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	3 cut(s)	591, 950, 1006
MwoI	GCNNNNNNNGC	2 cut(s)	831, 1036
NdeI	CATATG	1 cut(s)	1209
NdeII	GATC	4 cut(s)	465, 856, 901, 1450
NheI	GCTAGC	1 cut(s)	923
NlaIV	GGNNCC	2 cut(s)	577, 881
NmuCI	GTSAC	3 cut(s)	725, 1132, 1422
NspI	RCATGY	2 cut(s)	764, 1507
NspV	TTCGAA	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	764
PagI	TCATGA	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	208
PdmI	GAANNNNTTC	3 cut(s)	208, 680, 1232
PfeI	GAWTC	1 cut(s)	83
PfoI	TCCNGGA	2 cut(s)	589, 1004
PkrI	GCNGC	2 cut(s)	1416, 1521
PleI	GAGTC	2 cut(s)	795, 1412
PpsI	GAGTC	2 cut(s)	795, 1412
Psp6I	CCWGG	3 cut(s)	589, 948, 1004
PspEI	GGTNACC	1 cut(s)	725
PspGI	CCWGG	3 cut(s)	589, 948, 1004
PspN4I	GGNNCC	2 cut(s)	577, 881
PsuI	RGATCY	3 cut(s)	856, 901, 1450
RsaI	GTAC	4 cut(s)	350, 1371, 1397, 1439
RsaNI	GTAC	4 cut(s)	349, 1370, 1396, 1438
SaqAI	TTAA	4 cut(s)	258, 503, 774, 1263
SatI	GCNGC	2 cut(s)	1415, 1520
Sau3AI	GATC	4 cut(s)	465, 856, 901, 1450
ScaI	AGTACT	1 cut(s)	350
SchI	GAGTC	2 cut(s)	796, 1413
ScrFI	CCNGG	3 cut(s)	591, 950, 1006
SduI	GDGCHC	3 cut(s)	526, 568, 1321
SfaNI	GCATC	4 cut(s)	175, 999, 1011, 1434
SfuI	TTCGAA	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SpeI	ACTAGT	1 cut(s)	100
SphI	GCATGC	1 cut(s)	764
Sse9I	AATT	2 cut(s)	676, 697
SsiI	CCGC	2 cut(s)	1043, 1085
SspMI	CTAG	5 cut(s)	101, 561, 924, 1031, 1314
StyD4I	CCNGG	3 cut(s)	589, 948, 1004
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	5 cut(s)	78, 256, 731, 1132, 1175
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	5 cut(s)	159, 191, 285, 766, 1101
TasI	AATT	2 cut(s)	676, 697
TatI	WGTACW	2 cut(s)	348, 1369
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	4 cut(s)	258, 503, 774, 1263
Tru9I	TTAA	4 cut(s)	258, 503, 774, 1263
TscAI	CASTG	3 cut(s)	560, 713, 1278
TseFI	GTSAC	3 cut(s)	725, 1132, 1422
TseI	GCWGC	2 cut(s)	1414, 1519
Tsp45I	GTSAC	3 cut(s)	725, 1132, 1422
TspDTI	ATGAA	4 cut(s)	17, 830, 1002, 1445
TspRI	CASTG	3 cut(s)	560, 713, 1278
XapI	RAATTY	1 cut(s)	676
XceI	RCATGY	2 cut(s)	764, 1507
XmnI	GAANNNNTTC	3 cut(s)	208, 680, 1232
XspI	CTAG	5 cut(s)	101, 561, 924, 1031, 1314
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.