Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002617

Physical Location & Seq

Genomic Coordinates Forward (+)

934157 .. 938575

Gene Structure 4419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G001110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTTTACTGAGGAACAGGTTGAGCAGATTGACAAAAACAAGCAGTGGTCAAGGGCCCTTGATGGTTCTGATTACCTTCCTGGAATGGTGGGGCTAAATAACATTAAGGAGACTGATTTTGTGAATGTCACTATTCAATCCTTAATGAGAGTTATGCCTTTAAGAAACTTTTTTCTTATCCCAAAGAACTATCAAAATTGCAAGTCTCCGCTTGTTCATCGATTTGGGGAGCTTACAAGAAAGATATGGCATGCACGCAACTTTAAAGGACAGGTGAGCCCGCATGAGTTCCTGCAGGCAGTTATGAAAGCCAGTAAGAAACGGTTTCGAATAGGAGCTCAGTCTGACCCTGTTGAGTTCATGTCATGGATGCTCAATACACTTCATGCAGATCTTAAAACTAAGAAGAATACCAGCATCATTTATGACTGCTTTCAGGGGGAACTAGAGGTTGTCAAGGAGACCCACAAGAATACAGATGGAGGAACTGAATACAAGGGCCTTGTCACAGAAACTTACAGAATGCCTTTCTTAATGCTTGGATTGGATTTGCCCCCACCACCTCTTTTTAAAGATGTGATGGAGAAAAACATCATACCACAGGTCCCGCTGTTCAACATTTTGAAGAAATTTGATGGTGAGACTGTTACTGAAATCGTCCGGCCTCGCATAGCAAGGACGAGGTATCGCGTTACTAGATTACCACGGTATCTAATTCTGCACATGCAACGATTCACAAAGAACAACTTCTTTGTGGAGAAGAATCCTACTCTAGTCAACTTTCCTGTGAAGAACCTGGAATTGAGAGATTACATTCCTTTGCCAACCCCCAAGGAGAATGAGAGATTGCGTTCAAAGTATGATTTGATTGCGAATATTGTTCATGATGGTAAACCTGGTGAAGGGTCCTACAGAGTGTTTGTACAGCGAAAGTCAGAAGAACTATGGTATGAGATGCAGGATCTTCATGTCTCAGAAACACTTCCTCAGATGGTTGCTCTTTCCGAGGCTTATATGCAGATATATGAGCAGCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

346

Amino Acids

40.7

Weight (kDa)

9.22

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	30 - 342	7.1e-45	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22285 AT4G22285 AT4G22350 AT4G22350 AT4G22350 AT4G22350 AT4G22410 AT4G22410
fragaria_vesca	FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_6g03150
malus_domestica	MD05G1357700.v1.1 MD10G1331700.v1.1
prunus_persica	Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1
pyrus_communis	pycom05g32360 pycom10g28130
rosa_chinensis	RchiOBHm_Chr4g0397451 RchiOBHm_Chr5g0001501 RchiOBHm_Chr5g0001511
rosa_laevigata	RLG00000030934
rosa_multiflora	Rmu_sc0003749.1_g000009
rosa_roxburghii	Rroxscaffold_1G00074880
rosa_rugosa	Rorug04G0390700
rosa_samantha	Rh5AG011700 Rh5BG014200 Rh5CG012700 Rh5DG012000
rosa_wichuraiana	Rw5G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	690
AciI	CCGC	3 cut(s)	209, 281, 608
AclWI	GGATC	1 cut(s)	969
AcsI	RAATTY	1 cut(s)	629
AfaI	GTAC	1 cut(s)	924
AfiI	CCNNNNNNNGG	1 cut(s)	902
AgsI	TTSAA	4 cut(s)	137, 616, 625, 855
AjnI	CCWGG	3 cut(s)	79, 795, 895
AluBI	AGCT	2 cut(s)	232, 338
AluI	AGCT	2 cut(s)	232, 338
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	5 cut(s)	104, 210, 455, 635, 976
AlwI	GGATC	1 cut(s)	969
AoxI	GGCC	3 cut(s)	54, 499, 662
ApaI	GGGCCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	1030
ApoI	RAATTY	1 cut(s)	629
Asp700I	GAANNNNTTC	2 cut(s)	746, 981
AspS9I	GGNCC	5 cut(s)	54, 55, 499, 604, 906
AsuHPI	GGTGA	3 cut(s)	286, 650, 911
AsuII	TTCGAA	1 cut(s)	328
AvaII	GGWCC	2 cut(s)	604, 906
BaeGI	GKGCMC	1 cut(s)	58
BaeI	ACNNNNGTAYC	2 cut(s)	692, 725
BanII	GRGCYC	3 cut(s)	58, 281, 340
Bbv12I	GWGCWC	1 cut(s)	340
BccI	CCATC	6 cut(s)	56, 473, 574, 629, 881, 985
BciT130I	CCWGG	3 cut(s)	81, 797, 897
BcoDI	GTCTC	5 cut(s)	104, 210, 455, 635, 976
BfaI	CTAG	3 cut(s)	446, 696, 773
BfmI	CTRYAG	2 cut(s)	293, 910
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	1 cut(s)	1031
BlsI	GCNGC	1 cut(s)	1032
Bme1390I	CCNGG	3 cut(s)	81, 797, 897
Bme18I	GGWCC	2 cut(s)	604, 906
BmgT120I	GGNCC	5 cut(s)	54, 55, 499, 604, 906
BmiI	GGNNCC	3 cut(s)	56, 606, 907
BmrFI	CCNGG	3 cut(s)	81, 797, 897
BmsI	GCATC	3 cut(s)	360, 426, 945
Bpu14I	TTCGAA	1 cut(s)	328
Bsa29I	ATCGAT	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	3 cut(s)	704, 831, 1005
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse1I	ACTGG	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	81, 797, 897
BseCI	ATCGAT	1 cut(s)	220
BseDI	CCNNGG	3 cut(s)	704, 831, 1005
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMII	CTCAG	3 cut(s)	353, 987, 1001
BseNI	ACTGG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	3 cut(s)	56, 501, 664
BshVI	ATCGAT	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	661
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmAI	GTCTC	5 cut(s)	104, 210, 455, 635, 976
BsmFI	GGGAC	1 cut(s)	590
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	3 cut(s)	56, 501, 664
Bso31I	GGTCTC	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	328
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	3 cut(s)	58, 281, 340
Bsp1407I	TGTACA	1 cut(s)	922
Bsp143I	GATC	2 cut(s)	391, 961
BspACI	CCGC	3 cut(s)	209, 281, 608
BspANI	GGCC	3 cut(s)	56, 501, 664
BspCNI	CTCAG	3 cut(s)	352, 986, 1000
BspDI	ATCGAT	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	690
BspHI	TCATGA	1 cut(s)	883
BspLI	GGNNCC	3 cut(s)	56, 606, 907
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	1 cut(s)	969
BspT104I	TTCGAA	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	455
BsrGI	TGTACA	1 cut(s)	922
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	3 cut(s)	704, 831, 1005
BssMI	GATC	2 cut(s)	391, 961
BssT1I	CCWWGG	1 cut(s)	831
Bst2UI	CCWGG	3 cut(s)	81, 797, 897
Bst4CI	ACNGT	4 cut(s)	324, 646, 708, 1038
BstAUI	TGTACA	1 cut(s)	922
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	4 cut(s)	252, 256, 281, 297
BstDEI	CTNAG	5 cut(s)	9, 339, 402, 973, 987
BstDSI	CCRYGG	1 cut(s)	704
BstENI	CCTNNNNNAGG	1 cut(s)	900
BstF5I	GGATG	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	690
BstKTI	GATC	2 cut(s)	394, 964
BstMAI	GTCTC	5 cut(s)	104, 210, 455, 635, 976
BstMBI	GATC	2 cut(s)	391, 961
BstNI	CCWGG	3 cut(s)	81, 797, 897
BstNSI	RCATGY	2 cut(s)	254, 727
BstSCI	CCNGG	3 cut(s)	79, 795, 895
BstSFI	CTRYAG	2 cut(s)	293, 910
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	1 cut(s)	690
BstX2I	RGATCY	2 cut(s)	391, 961
BstYI	RGATCY	2 cut(s)	391, 961
Bsu15I	ATCGAT	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	56, 501, 664
BsuTUI	ATCGAT	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	704
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	252, 256, 281, 297
CciI	TCATGA	1 cut(s)	883
Cfr13I	GGNCC	5 cut(s)	54, 55, 499, 604, 906
ClaI	ATCGAT	1 cut(s)	220
CsiI	ACCWGGT	1 cut(s)	895
Csp6I	GTAC	1 cut(s)	923
CviAII	CATG	8 cut(s)	251, 284, 361, 366, 386, 724, 884, 968
CviJI	RGCY	9 cut(s)	56, 94, 232, 279, 311, 338, 501, 664, 1010
CviKI_1	RGCY	9 cut(s)	56, 94, 232, 279, 311, 338, 501, 664, 1010
CviQI	GTAC	1 cut(s)	923
DdeI	CTNAG	5 cut(s)	9, 339, 402, 973, 987
DpnI	GATC	2 cut(s)	393, 963
DpnII	GATC	2 cut(s)	391, 961
DraI	TTTAAA	2 cut(s)	265, 571
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	831
Eco24I	GRGCYC	3 cut(s)	58, 281, 340
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	2 cut(s)	604, 906
Eco53kI	GAGCTC	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	900
EcoO109I	RGGNCCY	5 cut(s)	54, 55, 499, 604, 906
EcoRII	CCWGG	3 cut(s)	79, 795, 895
EcoT14I	CCWWGG	1 cut(s)	831
EcoT38I	GRGCYC	3 cut(s)	58, 281, 340
ErhI	CCWWGG	1 cut(s)	831
FaeI	CATG	8 cut(s)	254, 287, 364, 369, 389, 727, 887, 971
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	8 cut(s)	250, 283, 360, 365, 385, 723, 883, 967
FauI	CCCGC	2 cut(s)	288, 615
Fnu4HI	GCNGC	1 cut(s)	1031
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	3 cut(s)	58, 281, 340
Fsp4HI	GCNGC	1 cut(s)	1031
FspBI	CTAG	3 cut(s)	446, 696, 773
GluI	GCNGC	1 cut(s)	1031
HaeIII	GGCC	3 cut(s)	56, 501, 664
HapII	CCGG	1 cut(s)	661
Hin1II	CATG	8 cut(s)	254, 287, 364, 369, 389, 727, 887, 971
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HinfI	GANTC	2 cut(s)	732, 763
HpaII	CCGG	1 cut(s)	661
HphI	GGTGA	3 cut(s)	286, 650, 911
Hpy166II	GTNNAC	3 cut(s)	6, 778, 893
Hpy188I	TCNGA	6 cut(s)	70, 346, 937, 976, 990, 1006
Hpy188III	TCNNGA	1 cut(s)	884
Hpy8I	GTNNAC	3 cut(s)	6, 778, 893
HpyAV	CCTTC	2 cut(s)	86, 896
HpyCH4III	ACNGT	4 cut(s)	324, 646, 708, 1038
HpyCH4V	TGCA	8 cut(s)	201, 254, 295, 389, 721, 727, 958, 1018
HpyF3I	CTNAG	5 cut(s)	9, 339, 402, 973, 987
Hsp92II	CATG	8 cut(s)	254, 287, 364, 369, 389, 727, 887, 971
Kzo9I	GATC	2 cut(s)	391, 961
LmnI	GCTCC	2 cut(s)	229, 335
LweI	GCATC	3 cut(s)	360, 426, 945
MabI	ACCWGGT	1 cut(s)	895
MaeI	CTAG	3 cut(s)	446, 696, 773
MaeIII	GTNAC	4 cut(s)	127, 505, 646, 691
MalI	GATC	2 cut(s)	393, 963
MboI	GATC	2 cut(s)	391, 961
MboII	GAAGA	6 cut(s)	418, 637, 772, 802, 950, 956
MflI	RGATCY	2 cut(s)	391, 961
MhlI	GDGCHC	3 cut(s)	58, 281, 340
MluCI	AATT	4 cut(s)	196, 629, 714, 800
MnlI	CCTC	8 cut(s)	4, 442, 476, 573, 675, 675, 996, 1000
MroXI	GAANNNNTTC	2 cut(s)	746, 981
MseI	TTAA	7 cut(s)	105, 143, 161, 264, 396, 533, 570
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	1 cut(s)	661
MspR9I	CCNGG	3 cut(s)	81, 797, 897
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	3 cut(s)	81, 797, 897
MvnI	CGCG	1 cut(s)	690
NdeII	GATC	2 cut(s)	391, 961
NlaIII	CATG	8 cut(s)	254, 287, 364, 369, 389, 727, 887, 971
NlaIV	GGNNCC	3 cut(s)	56, 606, 907
NmuCI	GTSAC	2 cut(s)	127, 505
NspI	RCATGY	2 cut(s)	254, 727
NspV	TTCGAA	1 cut(s)	328
PaeI	GCATGC	1 cut(s)	254
PagI	TCATGA	1 cut(s)	883
PctI	GAATGC	1 cut(s)	528
PdmI	GAANNNNTTC	2 cut(s)	746, 981
PfeI	GAWTC	2 cut(s)	732, 763
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	1032
PpuMI	RGGWCCY	2 cut(s)	604, 906
Psp124BI	GAGCTC	1 cut(s)	340
Psp5II	RGGWCCY	2 cut(s)	604, 906
Psp6I	CCWGG	3 cut(s)	79, 795, 895
PspGI	CCWGG	3 cut(s)	79, 795, 895
PspN4I	GGNNCC	3 cut(s)	56, 606, 907
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	5 cut(s)	54, 55, 499, 604, 906
PspPPI	RGGWCCY	2 cut(s)	604, 906
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	2 cut(s)	391, 961
RsaI	GTAC	1 cut(s)	924
RsaNI	GTAC	1 cut(s)	923
SacI	GAGCTC	1 cut(s)	340
SaqAI	TTAA	7 cut(s)	105, 143, 161, 264, 396, 533, 570
SatI	GCNGC	1 cut(s)	1031
Sau3AI	GATC	2 cut(s)	391, 961
Sau96I	GGNCC	5 cut(s)	54, 55, 499, 604, 906
SbfI	CCTGCAGG	1 cut(s)	297
ScrFI	CCNGG	3 cut(s)	81, 797, 897
SdaI	CCTGCAGG	1 cut(s)	297
SduI	GDGCHC	3 cut(s)	58, 281, 340
SexAI	ACCWGGT	1 cut(s)	895
SfaNI	GCATC	3 cut(s)	360, 426, 945
SfcI	CTRYAG	2 cut(s)	293, 910
SfuI	TTCGAA	1 cut(s)	328
SinI	GGWCC	2 cut(s)	604, 906
SphI	GCATGC	1 cut(s)	254
Sse8387I	CCTGCAGG	1 cut(s)	297
Sse9I	AATT	4 cut(s)	196, 629, 714, 800
SsiI	CCGC	3 cut(s)	209, 281, 608
SspI	AATATT	1 cut(s)	877
SspMI	CTAG	3 cut(s)	446, 696, 773
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	3 cut(s)	79, 795, 895
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	4 cut(s)	324, 646, 708, 1038
TaqI	TCGA	2 cut(s)	220, 328
TasI	AATT	4 cut(s)	196, 629, 714, 800
TatI	WGTACW	1 cut(s)	922
TfiI	GAWTC	2 cut(s)	732, 763
Tru1I	TTAA	7 cut(s)	105, 143, 161, 264, 396, 533, 570
Tru9I	TTAA	7 cut(s)	105, 143, 161, 264, 396, 533, 570
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	2 cut(s)	127, 505
TseI	GCWGC	1 cut(s)	1030
Tsp45I	GTSAC	2 cut(s)	127, 505
TspDTI	ATGAA	6 cut(s)	206, 320, 349, 374, 872, 956
TspRI	CASTG	1 cut(s)	50
VpaK11BI	GGWCC	2 cut(s)	604, 906
XagI	CCTNNNNNAGG	1 cut(s)	900
XapI	RAATTY	1 cut(s)	629
XceI	RCATGY	2 cut(s)	254, 727
XmnI	GAANNNNTTC	2 cut(s)	746, 981
XspI	CTAG	3 cut(s)	446, 696, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.