Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002617

Physical Location & Seq

Genomic Coordinates Reverse (-)

31788374 .. 31790936

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32360.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCCCAGGACTTCTCTTTGGACCTATTAAGTATTAGGCCCATATTTACCCTGAAGGGTTCCGGGAACTGTGTCTTCTCCGACTGCGAACACCAAACTGGTCCAGGGGATTTAAATTGGGTTAGGAGAATGAGCTCTAAGAGGGAACATGAAGGTAATGCTAGTGTGAACGTGGAAGGGTTTGAATCGGACCCAAAAAGGCAACAACTAAATGAGCATTCATTGCCGCCACCTACCTCTGAAGGCACTCTACTTCCGGGTTTTAATTATGGCGATGTGGACGACGAGGACAACCACAGAAGGCCACCTGTGAATGGCTCTAATGGGGACGGTGGCGATAATCAAAAGGGCGTACAAAATGGGGGTCAAGTCGAAGAAGTAGAGGATGATGATGATGATGACCTTGAACAAGGACTTTACCAAAGGCGGGGACGTGAAATCGAGGTCAGGAGGGATTGCCCGTATCTTGATGCCGTGAATCGCCAGGTTTTAGATTTTGATTTTGAGAAGTTCTGCTCTCTGTCCCTGTCAAATTTGAATGTTTATGCATGTTTGGTTTGTGGGAAGTATTATCAAGGCAGAGGGAAGAAGTCCCATGCATATACTCATAGCCTTGAAGCCGGACACCATGTTTATATCAATCTTCGAACGGAGAAAGTGTATTGCCTTCCCGATGGATATGAAATAAGTGACCCATCATTGGATGATATTCGGCATGTCCTAAACCCAAGGTTTACTGAGGAACAAGTGGAGCAGATTGACAAAAACAAGCAATGGTCCAGGGCACTTGATGGTTCCGATTACCTTCCTGGAATGGTGGGGCTCAATAACATTAAGGAGACTGATTTCGTGAATGTCACCATACAATCTTTAATGAGAGTCACTCCTCTAAGAAATTTTTTCCTTATCCCTAAGAATTATCAACACTGCAAGTCTCCGCTTGTTCATCGATTTGGGGAGCTAACGAGAAAGATATGGCATGCACGAAATTTCAAGGGACAGGTCAGTCCGCACGAGTTCCTACAGGCAGTTATGAAAGCCAGTAAGAAAAGGTTTCGAATTGGAGCACAGTCTGACCCAGTTGAATTCATGTCATGGCTGCTTAATAAGTTGCATGGATCGATCTTAGAACTTCGAAGAAAAATAGCAGCATCATATTTGAGTGCTTTCAGGGGGAACTGGAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

397

Amino Acids

45.28

Weight (kDa)

6.18

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22285 AT4G22285 AT4G22350 AT4G22350 AT4G22350 AT4G22350 AT4G22410 AT4G22410
fragaria_vesca	FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_6g03150
malus_domestica	MD05G1357700.v1.1 MD10G1331700.v1.1
prunus_persica	Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1
pyrus_communis	pycom05g32360 pycom10g28130
rosa_chinensis	RchiOBHm_Chr4g0397451 RchiOBHm_Chr5g0001501 RchiOBHm_Chr5g0001511
rosa_laevigata	RLG00000030934
rosa_multiflora	Rmu_sc0003749.1_g000009
rosa_roxburghii	Rroxscaffold_1G00074880
rosa_rugosa	Rorug04G0390700
rosa_samantha	Rh5AG011700 Rh5BG014200 Rh5CG012700 Rh5DG012000
rosa_wichuraiana	Rw5G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1005
AciI	CCGC	4 cut(s)	227, 427, 938, 1010
AclWI	GGATC	1 cut(s)	1126
AcsI	RAATTY	4 cut(s)	532, 895, 988, 1085
AcuI	CTGAAG	2 cut(s)	74, 261
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	3 cut(s)	314, 427, 700
AgsI	TTSAA	6 cut(s)	185, 407, 538, 617, 994, 1085
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	5 cut(s)	6, 103, 483, 779, 808
AluBI	AGCT	2 cut(s)	135, 961
AluI	AGCT	2 cut(s)	135, 961
Alw21I	GWGCWC	2 cut(s)	137, 1069
Alw26I	GTCTC	2 cut(s)	833, 939
AlwI	GGATC	1 cut(s)	1126
AoxI	GGCC	3 cut(s)	3, 38, 302
ApeKI	GCWGC	2 cut(s)	1099, 1148
ApoI	RAATTY	4 cut(s)	532, 895, 988, 1085
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AspS9I	GGNCC	6 cut(s)	4, 22, 39, 101, 190, 777
AsuC2I	CCSGG	2 cut(s)	64, 258
AsuHPI	GGTGA	1 cut(s)	850
AsuII	TTCGAA	3 cut(s)	646, 1057, 1135
AvaII	GGWCC	4 cut(s)	22, 101, 190, 777
BaeGI	GKGCMC	1 cut(s)	787
BanII	GRGCYC	2 cut(s)	137, 825
BarI	GAAGNNNNNNTAC	2 cut(s)	234, 266
BauI	CACGAG	1 cut(s)	1013
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	2 cut(s)	137, 1069
BbvI	GCAGC	2 cut(s)	1086, 1160
BccI	CCATC	3 cut(s)	668, 703, 785
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	5 cut(s)	8, 105, 485, 781, 810
BcnI	CCSGG	2 cut(s)	64, 258
BcoDI	GTCTC	2 cut(s)	833, 939
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	1022
BisI	GCNGC	3 cut(s)	227, 1100, 1149
BlsI	GCNGC	3 cut(s)	228, 1101, 1150
Bme1390I	CCNGG	7 cut(s)	8, 64, 105, 258, 485, 781, 810
Bme18I	GGWCC	4 cut(s)	22, 101, 190, 777
BmgBI	CACGTC	1 cut(s)	434
BmgT120I	GGNCC	6 cut(s)	4, 22, 39, 101, 190, 777
BmiI	GGNNCC	3 cut(s)	61, 192, 796
BmrFI	CCNGG	7 cut(s)	8, 64, 105, 258, 485, 781, 810
BmrI	ACTGGG	1 cut(s)	1073
BmsI	GCATC	2 cut(s)	460, 1160
BmuI	ACTGGG	1 cut(s)	1073
BpiI	GAAGAC	1 cut(s)	67
BplI	GAGNNNNNCTC	2 cut(s)	868, 900
Bpu14I	TTCGAA	3 cut(s)	646, 1057, 1135
BpuMI	CCSGG	2 cut(s)	64, 258
Bsa29I	ATCGAT	2 cut(s)	949, 1121
BsaJI	CCNNGG	4 cut(s)	6, 104, 728, 780
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 427, 700
Bse1I	ACTGG	4 cut(s)	103, 1041, 1079, 1184
Bse3DI	GCAATG	2 cut(s)	221, 779
BseBI	CCWGG	5 cut(s)	8, 105, 485, 781, 810
BseCI	ATCGAT	2 cut(s)	949, 1121
BseDI	CCNNGG	4 cut(s)	6, 104, 728, 780
BseGI	GGATG	2 cut(s)	391, 709
BseLI	CCNNNNNNNGG	3 cut(s)	314, 427, 700
BseMI	GCAATG	2 cut(s)	221, 779
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	4 cut(s)	103, 1041, 1079, 1184
BseRI	GAGGAG	1 cut(s)	876
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	2 cut(s)	1086, 1160
BshFI	GGCC	3 cut(s)	5, 40, 304
BshVI	ATCGAT	2 cut(s)	949, 1121
BsiHKAI	GWGCWC	2 cut(s)	137, 1069
BsiSI	CCGG	3 cut(s)	63, 257, 621
BslFI	GGGAC	5 cut(s)	341, 444, 508, 577, 1011
BslI	CCNNNNNNNGG	3 cut(s)	314, 427, 700
BsmAI	GTCTC	2 cut(s)	833, 939
BsmFI	GGGAC	5 cut(s)	341, 444, 508, 577, 1011
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	3 cut(s)	5, 40, 304
Bsp119I	TTCGAA	3 cut(s)	646, 1057, 1135
Bsp1286I	GDGCHC	4 cut(s)	137, 787, 825, 1069
Bsp143I	GATC	2 cut(s)	1118, 1122
BspACI	CCGC	4 cut(s)	227, 427, 938, 1010
BspANI	GGCC	3 cut(s)	5, 40, 304
BspCNI	CTCAG	1 cut(s)	730
BspDI	ATCGAT	2 cut(s)	949, 1121
BspLI	GGNNCC	3 cut(s)	61, 192, 796
BspPI	GGATC	1 cut(s)	1126
BspT104I	TTCGAA	3 cut(s)	646, 1057, 1135
BsrDI	GCAATG	2 cut(s)	221, 779
BsrI	ACTGG	4 cut(s)	103, 1041, 1079, 1184
BssECI	CCNNGG	4 cut(s)	6, 104, 728, 780
BssMI	GATC	2 cut(s)	1118, 1122
BssSI	CACGAG	1 cut(s)	1013
BssT1I	CCWWGG	1 cut(s)	728
Bst2BI	CACGAG	1 cut(s)	1013
Bst2UI	CCWGG	5 cut(s)	8, 105, 485, 781, 810
Bst4CI	ACNGT	3 cut(s)	71, 332, 1071
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstBI	TTCGAA	3 cut(s)	646, 1057, 1135
BstC8I	GCNNGC	1 cut(s)	981
BstDEI	CTNAG	5 cut(s)	138, 738, 890, 912, 1126
BstF5I	GGATG	2 cut(s)	391, 709
BstKTI	GATC	2 cut(s)	1121, 1125
BstMAI	GTCTC	2 cut(s)	833, 939
BstMBI	GATC	2 cut(s)	1118, 1122
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	5 cut(s)	8, 105, 485, 781, 810
BstNSI	RCATGY	3 cut(s)	552, 719, 983
BstSCI	CCNGG	7 cut(s)	6, 62, 103, 256, 483, 779, 808
BstSFI	CTRYAG	1 cut(s)	1022
BstSLI	GKGCMC	1 cut(s)	787
BstV1I	GCAGC	2 cut(s)	1086, 1160
BstV2I	GAAGAC	1 cut(s)	67
Bsu15I	ATCGAT	2 cut(s)	949, 1121
BsuRI	GGCC	3 cut(s)	5, 40, 304
BsuTUI	ATCGAT	2 cut(s)	949, 1121
BtgZI	GCGATG	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	391, 709
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	1 cut(s)	925
Cac8I	GCNNGC	1 cut(s)	981
Cfr13I	GGNCC	6 cut(s)	4, 22, 39, 101, 190, 777
ClaI	ATCGAT	2 cut(s)	949, 1121
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	9 cut(s)	149, 549, 596, 629, 716, 980, 1090, 1095, 1115
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	5 cut(s)	138, 738, 890, 912, 1126
DpnI	GATC	2 cut(s)	1120, 1124
DpnII	GATC	2 cut(s)	1118, 1122
DraI	TTTAAA	1 cut(s)	114
DrdI	GACNNNNNNGTC	1 cut(s)	1005
DseDI	GACNNNNNNGTC	1 cut(s)	1005
Ecl136II	GAGCTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	728
Eco24I	GRGCYC	2 cut(s)	137, 825
Eco47I	GGWCC	4 cut(s)	22, 101, 190, 777
Eco53kI	GAGCTC	1 cut(s)	135
Eco57I	CTGAAG	2 cut(s)	74, 261
EcoICRI	GAGCTC	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	1085
EcoRII	CCWGG	5 cut(s)	6, 103, 483, 779, 808
EcoT14I	CCWWGG	1 cut(s)	728
EcoT22I	ATGCAT	2 cut(s)	550, 601
EcoT38I	GRGCYC	2 cut(s)	137, 825
ErhI	CCWWGG	1 cut(s)	728
FaeI	CATG	9 cut(s)	152, 552, 599, 632, 719, 983, 1093, 1098, 1118
FaqI	GGGAC	5 cut(s)	341, 444, 508, 577, 1011
FatI	CATG	9 cut(s)	148, 548, 595, 628, 715, 979, 1089, 1094, 1114
FauI	CCCGC	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	227, 1100, 1149
FokI	GGATG	2 cut(s)	398, 716
FriOI	GRGCYC	2 cut(s)	137, 825
Fsp4HI	GCNGC	3 cut(s)	227, 1100, 1149
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	3 cut(s)	227, 1100, 1149
HaeIII	GGCC	3 cut(s)	5, 40, 304
HapII	CCGG	3 cut(s)	63, 257, 621
Hin1II	CATG	9 cut(s)	152, 552, 599, 632, 719, 983, 1093, 1098, 1118
HinfI	GANTC	3 cut(s)	185, 478, 879
HpaII	CCGG	3 cut(s)	63, 257, 621
HphI	GGTGA	1 cut(s)	850
Hpy166II	GTNNAC	3 cut(s)	169, 280, 735
Hpy188I	TCNGA	5 cut(s)	82, 190, 241, 799, 1075
Hpy188III	TCNNGA	4 cut(s)	448, 467, 671, 850
Hpy8I	GTNNAC	3 cut(s)	169, 280, 735
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	7 cut(s)	49, 146, 170, 236, 294, 677, 815
HpyCH4III	ACNGT	3 cut(s)	71, 332, 1071
HpyCH4IV	ACGT	2 cut(s)	171, 433
HpyCH4V	TGCA	5 cut(s)	548, 599, 930, 983, 1114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	5 cut(s)	138, 738, 890, 912, 1126
HpySE526I	ACGT	2 cut(s)	171, 433
Hsp92II	CATG	9 cut(s)	152, 552, 599, 632, 719, 983, 1093, 1098, 1118
Kzo9I	GATC	2 cut(s)	1118, 1122
LmnI	GCTCC	3 cut(s)	751, 958, 1064
Lsp1109I	GCAGC	2 cut(s)	1086, 1160
LweI	GCATC	2 cut(s)	460, 1160
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	2 cut(s)	171, 433
MaeIII	GTNAC	3 cut(s)	689, 856, 880
MalI	GATC	2 cut(s)	1120, 1124
MboI	GATC	2 cut(s)	1118, 1122
MboII	GAAGA	5 cut(s)	67, 386, 598, 635, 1149
MhlI	GDGCHC	4 cut(s)	137, 787, 825, 1069
MluCI	AATT	8 cut(s)	115, 265, 532, 895, 916, 988, 1059, 1085
MlyI	GAGTC	1 cut(s)	888
MmeI	TCCRAC	1 cut(s)	105
Mph1103I	ATGCAT	2 cut(s)	550, 601
MseI	TTAA	6 cut(s)	29, 113, 264, 834, 872, 1104
MspI	CCGG	3 cut(s)	63, 257, 621
MspR9I	CCNGG	7 cut(s)	8, 64, 105, 258, 485, 781, 810
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	5 cut(s)	8, 105, 485, 781, 810
MwoI	GCNNNNNNNGC	1 cut(s)	223
NciI	CCSGG	2 cut(s)	64, 258
NdeII	GATC	2 cut(s)	1118, 1122
NlaIII	CATG	9 cut(s)	152, 552, 599, 632, 719, 983, 1093, 1098, 1118
NlaIV	GGNNCC	3 cut(s)	61, 192, 796
NmuCI	GTSAC	3 cut(s)	689, 856, 880
NsiI	ATGCAT	2 cut(s)	550, 601
NspI	RCATGY	3 cut(s)	552, 719, 983
NspV	TTCGAA	3 cut(s)	646, 1057, 1135
PaeI	GCATGC	1 cut(s)	983
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	185, 478
PfoI	TCCNGGA	2 cut(s)	62, 808
PkrI	GCNGC	3 cut(s)	228, 1101, 1150
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
Psp124BI	GAGCTC	1 cut(s)	137
Psp6I	CCWGG	5 cut(s)	6, 103, 483, 779, 808
PspGI	CCWGG	5 cut(s)	6, 103, 483, 779, 808
PspN4I	GGNNCC	3 cut(s)	61, 192, 796
PspPI	GGNCC	6 cut(s)	4, 22, 39, 101, 190, 777
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	6 cut(s)	29, 113, 264, 834, 872, 1104
SatI	GCNGC	3 cut(s)	227, 1100, 1149
Sau3AI	GATC	2 cut(s)	1118, 1122
Sau96I	GGNCC	6 cut(s)	4, 22, 39, 101, 190, 777
SchI	GAGTC	1 cut(s)	888
ScrFI	CCNGG	7 cut(s)	8, 64, 105, 258, 485, 781, 810
SduI	GDGCHC	4 cut(s)	137, 787, 825, 1069
SfaNI	GCATC	2 cut(s)	460, 1160
SfcI	CTRYAG	1 cut(s)	1022
SfuI	TTCGAA	3 cut(s)	646, 1057, 1135
SinI	GGWCC	4 cut(s)	22, 101, 190, 777
SmiI	ATTTAAAT	1 cut(s)	114
SphI	GCATGC	1 cut(s)	983
Sse9I	AATT	8 cut(s)	115, 265, 532, 895, 916, 988, 1059, 1085
SsiI	CCGC	4 cut(s)	227, 427, 938, 1010
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	137
StyD4I	CCNGG	7 cut(s)	6, 62, 103, 256, 483, 779, 808
StyI	CCWWGG	1 cut(s)	728
SwaI	ATTTAAAT	1 cut(s)	114
TaaI	ACNGT	3 cut(s)	71, 332, 1071
TaiI	ACGT	2 cut(s)	174, 436
TaqI	TCGA	7 cut(s)	372, 441, 646, 949, 1057, 1121, 1135
TasI	AATT	8 cut(s)	115, 265, 532, 895, 916, 988, 1059, 1085
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	185, 478
Tru1I	TTAA	6 cut(s)	29, 113, 264, 834, 872, 1104
Tru9I	TTAA	6 cut(s)	29, 113, 264, 834, 872, 1104
TscAI	CASTG	1 cut(s)	932
TseFI	GTSAC	3 cut(s)	689, 856, 880
TseI	GCWGC	2 cut(s)	1099, 1148
Tsp45I	GTSAC	3 cut(s)	689, 856, 880
TspDTI	ATGAA	6 cut(s)	165, 210, 696, 935, 1049, 1078
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	1 cut(s)	932
VpaK11BI	GGWCC	4 cut(s)	22, 101, 190, 777
XapI	RAATTY	4 cut(s)	532, 895, 988, 1085
XceI	RCATGY	3 cut(s)	552, 719, 983
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	2 cut(s)	550, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.