Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003749.1

Orthogroup ID

OG0002617

Physical Location & Seq

Genomic Coordinates Reverse (-)

48600 .. 52595

Gene Structure 3996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003749.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

atgagttcgaagagagagcgtgaagataatggtggtgggggtattgaaggggaagggagtttattggaggcaaagaggcagaaagtgagtgaggaagtatcgccggactcttccccgcctgcctcccttcttcctggttttaattatggggacgaggatgaggaggagagaagggcacctgttaatggagggggtgatggtaaggagctacaggctggaaaaaatggggttcgagttgaagaagaagaagatgatgatggtgaacaaggactttatcaaggacacaagagccgcgaaattgaagttaggagggattgcccgtatcttgatgctgttaatcgccaggttttggattttgattttgagaagttttgctcgctttctctatcaaatttgaacgtgtatgcatgcttggtttgtgggaagtattaccaaggaagaggaaggaagtcccacgcatatactcatagccttgaagcaggacaccatgtgtatatcaatcttcgaacagagaaggtttattgccttcctgatggatatgaaattagtgacccatcattggatgacattcgacatgttctgaacccaaggtttacttattttggtgtattgtttgttgagcagattgacaaaaacaagcagtggtcaagggcccttgatggttctgattaccttcctggaatggtggggctaaataacattaaggagactgattttgtgaatgtcactattcaatccttaatgagagttatgcctttaagaaacttttttcttatcccaaagaactatcaaaattgcaagtctccgcttgttcatcgatttggggagcttacaagaaagatatggcatgcacgcaactttaaaggacaggtgagcccgcatgagttcctgcaggcagttatgaaagccagtaagaaacggtttcgaataggagctcagtctgaccctgttgagttcatgtcatggatgctcaatacacttcatgcagatcttaaaactaagaagaataccagcatcatttatgactgctttcagggggaactagaggttgtcaaggagacccacaagaatacagatggaggaactgaatacaagggccttgtcacagaaacttacagaatgcctttcttaatgcttggattggatttgcccccaccacctctttttaaagatgtgatggagaaaaacatcataccacaggtcccgctgttcaacattttgaagaaatttgatggtgagactgttactgaaatcgttcggcctcgcatagcaaggacgaggtatcgcgttactagattaccacggtatctaattctgcacatgcaacgattcacaaagaacaacttctttgtggagaagaatcctactctagtcaactttcctgtgaagaacctggaattgagagattacattcctttgccaacccccaaggagaatgagagattgcgttcaaagtatgatttgattgccaatattgttcatgatggtaaacctggtgaagggtcctacagagtatttgtacagcgaaagtcagaagaactatggtatgagatgcaggatcttcatgtctcagaaacacttcctcagatggttgctctttccgaggcttatatgcagatatatgagcagcaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

545

Amino Acids

62.9

Weight (kDa)

6.43

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22285 AT4G22285 AT4G22350 AT4G22350 AT4G22350 AT4G22350 AT4G22410 AT4G22410
fragaria_vesca	FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_6g03150
malus_domestica	MD05G1357700.v1.1 MD10G1331700.v1.1
prunus_persica	Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1
pyrus_communis	pycom05g32360 pycom10g28130
rosa_chinensis	RchiOBHm_Chr4g0397451 RchiOBHm_Chr5g0001501 RchiOBHm_Chr5g0001511
rosa_laevigata	RLG00000030934
rosa_multiflora	Rmu_sc0003749.1_g000009
rosa_roxburghii	Rroxscaffold_1G00074880
rosa_rugosa	Rorug04G0390700
rosa_samantha	Rh5AG011700 Rh5BG014200 Rh5CG012700 Rh5DG012000
rosa_wichuraiana	Rw5G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccII	CGCG	2 cut(s)	294, 1287
AciI	CCGC	5 cut(s)	116, 292, 806, 878, 1205
AclWI	GGATC	1 cut(s)	1566
AcsI	RAATTY	2 cut(s)	391, 1226
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	1 cut(s)	1521
AfiI	CCNNNNNNNGG	4 cut(s)	185, 349, 559, 1499
AflIII	ACRYGT	2 cut(s)	399, 574
AgsI	TTSAA	9 cut(s)	47, 239, 302, 397, 476, 734, 1213, 1222, 1452
AjnI	CCWGG	5 cut(s)	133, 342, 676, 1392, 1492
AluBI	AGCT	3 cut(s)	208, 829, 935
AluI	AGCT	3 cut(s)	208, 829, 935
Alw21I	GWGCWC	1 cut(s)	937
Alw26I	GTCTC	5 cut(s)	701, 807, 1052, 1232, 1573
AlwI	GGATC	1 cut(s)	1566
AoxI	GGCC	3 cut(s)	651, 1096, 1259
ApaI	GGGCCC	1 cut(s)	655
ApeKI	GCWGC	1 cut(s)	1627
ApoI	RAATTY	2 cut(s)	391, 1226
Asp700I	GAANNNNTTC	3 cut(s)	1254, 1343, 1578
AspS9I	GGNCC	5 cut(s)	651, 652, 1096, 1201, 1503
AsuHPI	GGTGA	5 cut(s)	206, 272, 883, 1247, 1508
AsuII	TTCGAA	3 cut(s)	8, 505, 925
AvaII	GGWCC	2 cut(s)	1201, 1503
BaeGI	GKGCMC	2 cut(s)	178, 655
BaeI	ACNNNNGTAYC	2 cut(s)	1289, 1322
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	3 cut(s)	655, 878, 937
Bbv12I	GWGCWC	1 cut(s)	937
BciT130I	CCWGG	5 cut(s)	135, 344, 678, 1394, 1494
BcoDI	GTCTC	5 cut(s)	701, 807, 1052, 1232, 1573
BfaI	CTAG	3 cut(s)	1043, 1293, 1370
BfmI	CTRYAG	3 cut(s)	209, 890, 1507
BglII	AGATCT	1 cut(s)	988
BisI	GCNGC	2 cut(s)	292, 1628
BlsI	GCNGC	2 cut(s)	293, 1629
Bme1390I	CCNGG	5 cut(s)	135, 344, 678, 1394, 1494
Bme18I	GGWCC	2 cut(s)	1201, 1503
BmgT120I	GGNCC	5 cut(s)	651, 652, 1096, 1201, 1503
BmiI	GGNNCC	4 cut(s)	177, 653, 1203, 1504
BmrFI	CCNGG	5 cut(s)	135, 344, 678, 1394, 1494
BmsI	GCATC	4 cut(s)	319, 957, 1023, 1542
Bpu14I	TTCGAA	3 cut(s)	8, 505, 925
Bsa29I	ATCGAT	1 cut(s)	817
BsaI	GGTCTC	1 cut(s)	1052
BsaJI	CCNNGG	5 cut(s)	433, 587, 1301, 1428, 1602
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 349, 559, 1499
Bse1I	ACTGG	1 cut(s)	909
BseBI	CCWGG	5 cut(s)	135, 344, 678, 1394, 1494
BseCI	ATCGAT	1 cut(s)	817
BseDI	CCNNGG	5 cut(s)	433, 587, 1301, 1428, 1602
BseGI	GGATG	3 cut(s)	163, 568, 972
BseLI	CCNNNNNNNGG	4 cut(s)	185, 349, 559, 1499
BseMII	CTCAG	3 cut(s)	950, 1584, 1598
BseNI	ACTGG	1 cut(s)	909
BseRI	GAGGAG	2 cut(s)	176, 179
BseSI	GKGCMC	2 cut(s)	178, 655
BsgI	GTGCAG	1 cut(s)	1301
Bsh1236I	CGCG	2 cut(s)	294, 1287
BshFI	GGCC	3 cut(s)	653, 1098, 1261
BshNI	GGYRCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	817
BsiHKAI	GWGCWC	1 cut(s)	937
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	3 cut(s)	164, 436, 1187
BslI	CCNNNNNNNGG	4 cut(s)	185, 349, 559, 1499
BsmAI	GTCTC	5 cut(s)	701, 807, 1052, 1232, 1573
BsmFI	GGGAC	3 cut(s)	164, 436, 1187
BsmI	GAATGC	1 cut(s)	1125
BsnI	GGCC	3 cut(s)	653, 1098, 1261
Bso31I	GGTCTC	1 cut(s)	1052
Bsp119I	TTCGAA	3 cut(s)	8, 505, 925
Bsp120I	GGGCCC	1 cut(s)	651
Bsp1286I	GDGCHC	4 cut(s)	178, 655, 878, 937
Bsp1407I	TGTACA	1 cut(s)	1519
Bsp143I	GATC	2 cut(s)	988, 1558
BspACI	CCGC	5 cut(s)	116, 292, 806, 878, 1205
BspANI	GGCC	3 cut(s)	653, 1098, 1261
BspCNI	CTCAG	3 cut(s)	949, 1583, 1597
BspDI	ATCGAT	1 cut(s)	817
BspFNI	CGCG	2 cut(s)	294, 1287
BspHI	TCATGA	1 cut(s)	1480
BspLI	GGNNCC	4 cut(s)	177, 653, 1203, 1504
BspMAI	CTGCAG	1 cut(s)	894
BspPI	GGATC	1 cut(s)	1566
BspT104I	TTCGAA	3 cut(s)	8, 505, 925
BspT107I	GGYRCC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	1052
BsrGI	TGTACA	1 cut(s)	1519
BsrI	ACTGG	1 cut(s)	909
BssECI	CCNNGG	5 cut(s)	433, 587, 1301, 1428, 1602
BssMI	GATC	2 cut(s)	988, 1558
BssT1I	CCWWGG	3 cut(s)	433, 587, 1428
Bst2UI	CCWGG	5 cut(s)	135, 344, 678, 1394, 1494
Bst4CI	ACNGT	4 cut(s)	921, 1243, 1305, 1635
Bst6I	CTCTTC	3 cut(s)	5, 115, 433
BstAUI	TGTACA	1 cut(s)	1519
BstBI	TTCGAA	3 cut(s)	8, 505, 925
BstC8I	GCNNGC	7 cut(s)	120, 377, 409, 849, 853, 878, 894
BstDEI	CTNAG	4 cut(s)	936, 999, 1570, 1584
BstDSI	CCRYGG	1 cut(s)	1301
BstENI	CCTNNNNNAGG	1 cut(s)	1497
BstF5I	GGATG	3 cut(s)	163, 568, 972
BstFNI	CGCG	2 cut(s)	294, 1287
BstKTI	GATC	2 cut(s)	991, 1561
BstMAI	GTCTC	5 cut(s)	701, 807, 1052, 1232, 1573
BstMBI	GATC	2 cut(s)	988, 1558
BstNI	CCWGG	5 cut(s)	135, 344, 678, 1394, 1494
BstNSI	RCATGY	4 cut(s)	411, 578, 851, 1324
BstSCI	CCNGG	5 cut(s)	133, 342, 676, 1392, 1492
BstSFI	CTRYAG	3 cut(s)	209, 890, 1507
BstSLI	GKGCMC	2 cut(s)	178, 655
BstUI	CGCG	2 cut(s)	294, 1287
BstX2I	RGATCY	2 cut(s)	988, 1558
BstYI	RGATCY	2 cut(s)	988, 1558
Bsu15I	ATCGAT	1 cut(s)	817
BsuRI	GGCC	3 cut(s)	653, 1098, 1261
BsuTUI	ATCGAT	1 cut(s)	817
BtgI	CCRYGG	1 cut(s)	1301
BtsCI	GGATG	3 cut(s)	163, 568, 972
BtsI	GCAGTG	1 cut(s)	647
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	7 cut(s)	120, 377, 409, 849, 853, 878, 894
CciI	TCATGA	1 cut(s)	1480
Cfr13I	GGNCC	5 cut(s)	651, 652, 1096, 1201, 1503
ClaI	ATCGAT	1 cut(s)	817
CsiI	ACCWGGT	1 cut(s)	1492
Csp6I	GTAC	1 cut(s)	1520
CviQI	GTAC	1 cut(s)	1520
DdeI	CTNAG	4 cut(s)	936, 999, 1570, 1584
DpnI	GATC	2 cut(s)	990, 1560
DpnII	GATC	2 cut(s)	988, 1558
DraI	TTTAAA	2 cut(s)	862, 1168
DraIII	CACNNNGTG	1 cut(s)	490
Eam1104I	CTCTTC	3 cut(s)	5, 115, 433
EarI	CTCTTC	3 cut(s)	5, 115, 433
Ecl136II	GAGCTC	1 cut(s)	935
Eco130I	CCWWGG	3 cut(s)	433, 587, 1428
Eco24I	GRGCYC	3 cut(s)	655, 878, 937
Eco31I	GGTCTC	1 cut(s)	1052
Eco47I	GGWCC	2 cut(s)	1201, 1503
Eco53kI	GAGCTC	1 cut(s)	935
EcoICRI	GAGCTC	1 cut(s)	935
EcoNI	CCTNNNNNAGG	1 cut(s)	1497
EcoO109I	RGGNCCY	5 cut(s)	651, 652, 1096, 1201, 1503
EcoRII	CCWGG	5 cut(s)	133, 342, 676, 1392, 1492
EcoT14I	CCWWGG	3 cut(s)	433, 587, 1428
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	3 cut(s)	655, 878, 937
ErhI	CCWWGG	3 cut(s)	433, 587, 1428
FalI	AAGNNNNNCTT	4 cut(s)	580, 612, 1328, 1360
FaqI	GGGAC	3 cut(s)	164, 436, 1187
FauI	CCCGC	3 cut(s)	123, 885, 1212
Fnu4HI	GCNGC	2 cut(s)	292, 1628
FokI	GGATG	3 cut(s)	170, 575, 979
FriOI	GRGCYC	3 cut(s)	655, 878, 937
Fsp4HI	GCNGC	2 cut(s)	292, 1628
FspBI	CTAG	3 cut(s)	1043, 1293, 1370
GluI	GCNGC	2 cut(s)	292, 1628
HaeIII	GGCC	3 cut(s)	653, 1098, 1261
HapII	CCGG	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	1375
HindII	GTYRAC	1 cut(s)	1375
HinfI	GANTC	3 cut(s)	107, 1329, 1360
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	5 cut(s)	206, 272, 883, 1247, 1508
Hpy166II	GTNNAC	4 cut(s)	263, 594, 1375, 1490
Hpy188I	TCNGA	7 cut(s)	582, 667, 943, 1534, 1573, 1587, 1603
Hpy188III	TCNNGA	3 cut(s)	326, 530, 1481
Hpy8I	GTNNAC	4 cut(s)	263, 594, 1375, 1490
HpyAV	CCTTC	9 cut(s)	41, 47, 137, 165, 438, 508, 536, 683, 1493
HpyCH4III	ACNGT	4 cut(s)	921, 1243, 1305, 1635
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	9 cut(s)	407, 798, 851, 892, 986, 1318, 1324, 1555, 1615
HpyF3I	CTNAG	4 cut(s)	936, 999, 1570, 1584
HpySE526I	ACGT	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	988, 1558
LmnI	GCTCC	3 cut(s)	205, 826, 932
LweI	GCATC	4 cut(s)	319, 957, 1023, 1542
MabI	ACCWGGT	1 cut(s)	1492
MaeI	CTAG	3 cut(s)	1043, 1293, 1370
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	5 cut(s)	548, 724, 1102, 1243, 1288
MalI	GATC	2 cut(s)	990, 1560
MboI	GATC	2 cut(s)	988, 1558
MflI	RGATCY	2 cut(s)	988, 1558
MhlI	GDGCHC	4 cut(s)	178, 655, 878, 937
MluCI	AATT	8 cut(s)	142, 297, 391, 543, 793, 1226, 1311, 1397
MlyI	GAGTC	1 cut(s)	101
Mph1103I	ATGCAT	1 cut(s)	409
MroXI	GAANNNNTTC	3 cut(s)	1254, 1343, 1578
MspA1I	CMGCKG	1 cut(s)	1207
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	5 cut(s)	135, 344, 678, 1394, 1494
Mva1269I	GAATGC	1 cut(s)	1125
MvaI	CCWGG	5 cut(s)	135, 344, 678, 1394, 1494
MvnI	CGCG	2 cut(s)	294, 1287
NdeII	GATC	2 cut(s)	988, 1558
NlaIV	GGNNCC	4 cut(s)	177, 653, 1203, 1504
NmuCI	GTSAC	3 cut(s)	548, 724, 1102
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	4 cut(s)	411, 578, 851, 1324
NspV	TTCGAA	3 cut(s)	8, 505, 925
PaeI	GCATGC	2 cut(s)	411, 851
PagI	TCATGA	1 cut(s)	1480
PciI	ACATGT	1 cut(s)	574
PctI	GAATGC	1 cut(s)	1125
PdmI	GAANNNNTTC	3 cut(s)	1254, 1343, 1578
PfeI	GAWTC	2 cut(s)	1329, 1360
PflMI	CCANNNNNTGG	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	2 cut(s)	293, 1629
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PpuMI	RGGWCCY	2 cut(s)	1201, 1503
PscI	ACATGT	1 cut(s)	574
Psp124BI	GAGCTC	1 cut(s)	937
Psp5II	RGGWCCY	2 cut(s)	1201, 1503
Psp6I	CCWGG	5 cut(s)	133, 342, 676, 1392, 1492
PspGI	CCWGG	5 cut(s)	133, 342, 676, 1392, 1492
PspN4I	GGNNCC	4 cut(s)	177, 653, 1203, 1504
PspOMI	GGGCCC	1 cut(s)	651
PspPI	GGNCC	5 cut(s)	651, 652, 1096, 1201, 1503
PspPPI	RGGWCCY	2 cut(s)	1201, 1503
PstI	CTGCAG	1 cut(s)	894
PsuI	RGATCY	2 cut(s)	988, 1558
RsaI	GTAC	1 cut(s)	1521
RsaNI	GTAC	1 cut(s)	1520
SacI	GAGCTC	1 cut(s)	937
SatI	GCNGC	2 cut(s)	292, 1628
Sau3AI	GATC	2 cut(s)	988, 1558
Sau96I	GGNCC	5 cut(s)	651, 652, 1096, 1201, 1503
SbfI	CCTGCAGG	1 cut(s)	894
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	5 cut(s)	135, 344, 678, 1394, 1494
SdaI	CCTGCAGG	1 cut(s)	894
SduI	GDGCHC	4 cut(s)	178, 655, 878, 937
SexAI	ACCWGGT	1 cut(s)	1492
SfaNI	GCATC	4 cut(s)	319, 957, 1023, 1542
SfcI	CTRYAG	3 cut(s)	209, 890, 1507
SfuI	TTCGAA	3 cut(s)	8, 505, 925
SinI	GGWCC	2 cut(s)	1201, 1503
SphI	GCATGC	2 cut(s)	411, 851
Sse8387I	CCTGCAGG	1 cut(s)	894
Sse9I	AATT	8 cut(s)	142, 297, 391, 543, 793, 1226, 1311, 1397
SsiI	CCGC	5 cut(s)	116, 292, 806, 878, 1205
SspI	AATATT	1 cut(s)	1474
SspMI	CTAG	3 cut(s)	1043, 1293, 1370
SstI	GAGCTC	1 cut(s)	937
StyD4I	CCNGG	5 cut(s)	133, 342, 676, 1392, 1492
StyI	CCWWGG	3 cut(s)	433, 587, 1428
TaaI	ACNGT	4 cut(s)	921, 1243, 1305, 1635
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	6 cut(s)	8, 232, 505, 571, 817, 925
TasI	AATT	8 cut(s)	142, 297, 391, 543, 793, 1226, 1311, 1397
TatI	WGTACW	1 cut(s)	1519
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	1329, 1360
TscAI	CASTG	1 cut(s)	647
TseFI	GTSAC	3 cut(s)	548, 724, 1102
TseI	GCWGC	1 cut(s)	1627
Tsp45I	GTSAC	3 cut(s)	548, 724, 1102
TspDTI	ATGAA	7 cut(s)	555, 803, 917, 946, 971, 1469, 1553
TspRI	CASTG	1 cut(s)	647
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	1201, 1503
XagI	CCTNNNNNAGG	1 cut(s)	1497
XapI	RAATTY	2 cut(s)	391, 1226
XceI	RCATGY	4 cut(s)	411, 578, 851, 1324
XmnI	GAANNNNTTC	3 cut(s)	1254, 1343, 1578
XspI	CTAG	3 cut(s)	1043, 1293, 1370
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.