FvH4_6g03150

U4 U6.U5 tri-snRNP-associated protein 2-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
1759873 .. 1762727
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03150.t1

Sequence Viewer

Length: 1428 bp
ATGAGTTCGAAGAGAGAACATGAAGATAATGAAGGGGAAGGGTACTTGTTAAACTCGAAGAGGCAGAAAGTGAGCGAGGAAGTATCGCCGGCCTCTTCGCCTCCAGTAGTCTCTCGCCGTGAAATTCAAGTTAGGAGAGACTGCCCATATCTTGATGCTGTTAATCGCCAGGTTTTGGATTTTGATTTTGAGAAGTATTGCTCGGTTTCTCTATCGAACTTGAACGTGTATGCATGCTTGGTATGTGGAAAATATTACCAAGGAAGAGGAAGGAAGTCCCACGCATATACGCATAGCCTTGAAGCAGGACACCATGTGTTCATAAATCTTGGAACCGAGAGGGTATATTGCCTTCCTGATGGATATGAAATTAGTGATCCATCATTGGATGACATTCGACATGTTCTTAACCCAAAGTTTACTGAGGAACAGGTTGAGAAGATTGATGGAAACAAGCAGTGGTCTAGGGCACTTGATGGTTCTGATTACCTTGCTGGAATGGTAGGGTTAAATAACATTAAGCAAAGTGATTTTGTGAATGTCACTGTTCAATCCTTAATGAGAGTTTCGCCACTAAGAAACTTCTTTCTTATACCAAAGAACTATGAACATTGCAAGTCTCCGCTTGTTCATCGATTTGGGGAGCTTACAAGGAAGATATGGCATGCACGAAACTTTAAAGGACAGGTGAGTCCTCATGAGTTCCTGCAGGCAGTTATGAAAGCCAGTAAGAATCGGTTTCGAATAGGAGCGCCGTCTGACCCTGCTGAGTTCATGTTATGGTTGCTCAATACACTTCACTCAGATCTTAAAACTGAGAAGAACACGAGCATCATTCATGACTGCTTTGAGGGGGAACTAGAGCAAAGCCACATTGATGCAGATGGAGGAGTACTTGTCACAGAAAGTTGCAGAAAGACTTTCTTAATGCTTGGATTGGATATGCCCCCAGCGCCACTTTTTAAAGATGTGATGGAGAGAAACATGATACCGCAGGTCCCGCTGTTCAACATTATGAAGAAATTTGATGGTGAGACTGTCACTGAAGAACAACGGTATCGCGTCACCAGATTACCACGGTATCTGATTCTGCACATGAAAAGATTCACAAAGAACAACTCGTTTGTGGAGAAGAACCCCACACTAGTCAACTTTCCTGTGAAGAACCTGGAGTTGAGAGACTACATCCCTTTGCCAACCCCCAAGGAGAATGAGAGATTGCATACAAAGTATGATTTGATTGGCAATATTGTTCATGATGGTGAACCTCATAAAAATAAACCTGGTGAAGGATCCTACAGAGTATTTGTACAACGAAAGTCGGAAGAAGTATGGTATGAGATGCAGGATCTACATGTCTCTGAAGCACTTCCTCAGATGGTTGCCCTTTCTGAGGCTTATATGCAGATATATGAGCAGCGACAGTAA

Protein Analysis

476

Amino Acids

55.03

Weight (kDa)

6.82

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-UBP PF02148 67 - 128 6e-20 Zn-finger in ubiquitin-hydrolases and other protein
UCH PF00443 168 - 471 8.7e-42 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 690
Acc36I ACCTGC 1 cut(s) 985
AccB7I CCANNNNNTGG 1 cut(s) 175
AccII CGCG 1 cut(s) 1062
AciI CCGC 3 cut(s) 623, 992, 1001
AclWI GGATC 4 cut(s) 371, 1287, 1300, 1356
AcsI RAATTY 2 cut(s) 123, 1022
AcuI CTGAAG 2 cut(s) 1065, 1383
AdeI CACNNNGTG 1 cut(s) 316
AfaI GTAC 3 cut(s) 44, 894, 1311
AfiI CCNNNNNNNGG 3 cut(s) 175, 1289, 1393
AflIII ACRYGT 3 cut(s) 225, 400, 1354
AgsI TTSAA 5 cut(s) 128, 223, 302, 551, 1009
AhlI ACTAGT 1 cut(s) 1144
AjnI CCWGG 3 cut(s) 168, 1167, 1282
AluBI AGCT 1 cut(s) 646
AluI AGCT 1 cut(s) 646
Alw26I GTCTC 6 cut(s) 115, 132, 624, 1028, 1173, 1363
AlwI GGATC 4 cut(s) 371, 1287, 1300, 1356
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 1417
ApoI RAATTY 2 cut(s) 123, 1022
Asp700I GAANNNNTTC 2 cut(s) 1103, 1368
AspLEI GCGC 2 cut(s) 754, 955
AspS9I GGNCC 1 cut(s) 997
AsuHPI GGTGA 5 cut(s) 700, 1043, 1057, 1274, 1298
AsuII TTCGAA 2 cut(s) 8, 742
AvaII GGWCC 1 cut(s) 997
BaeGI GKGCMC 1 cut(s) 472
BaeI ACNNNNGTAYC 4 cut(s) 1040, 1064, 1073, 1097
BamHI GGATCC 1 cut(s) 1292
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
BauI CACGAG 1 cut(s) 826
BccI CCATC 9 cut(s) 353, 388, 440, 470, 878, 967, 1022, 1253, 1372
BceAI ACGGC 2 cut(s) 102, 739
BciT130I CCWGG 3 cut(s) 170, 1169, 1284
BcoDI GTCTC 6 cut(s) 115, 132, 624, 1028, 1173, 1363
BcuI ACTAGT 1 cut(s) 1144
BfaI CTAG 3 cut(s) 465, 860, 1145
BfmI CTRYAG 2 cut(s) 707, 1297
BfoI RGCGCY 2 cut(s) 755, 956
BfuAI ACCTGC 1 cut(s) 985
BglII AGATCT 1 cut(s) 805
BisI GCNGC 1 cut(s) 1418
BlsI GCNGC 1 cut(s) 1419
BmcAI AGTACT 1 cut(s) 894
Bme1390I CCNGG 3 cut(s) 170, 1169, 1284
Bme18I GGWCC 1 cut(s) 997
BmgT120I GGNCC 1 cut(s) 997
BmiI GGNNCC 3 cut(s) 334, 999, 1294
BmrFI CCNGG 3 cut(s) 170, 1169, 1284
BmsI GCATC 4 cut(s) 145, 840, 868, 1332
BpmI CTGGAG 2 cut(s) 87, 1190
Bpu14I TTCGAA 2 cut(s) 8, 742
Bsa29I ATCGAT 1 cut(s) 634
BsaJI CCNNGG 3 cut(s) 259, 1076, 1203
BsaXI ACNNNNNCTCC 2 cut(s) 882, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 1289, 1393
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 2 cut(s) 104, 726
Bse3DI GCAATG 1 cut(s) 610
BseBI CCWGG 3 cut(s) 170, 1169, 1284
BseCI ATCGAT 1 cut(s) 634
BseDI CCNNGG 3 cut(s) 259, 1076, 1203
BseGI GGATG 2 cut(s) 394, 1185
BseLI CCNNNNNNNGG 3 cut(s) 175, 1289, 1393
BseMI GCAATG 1 cut(s) 610
BseMII CTCAG 6 cut(s) 414, 759, 807, 816, 1383, 1388
BseNI ACTGG 2 cut(s) 104, 726
BseRI GAGGAG 1 cut(s) 903
BseSI GKGCMC 1 cut(s) 472
BseYI CCCAGC 1 cut(s) 949
BsgI GTGCAG 1 cut(s) 1076
Bsh1236I CGCG 1 cut(s) 1062
BshFI GGCC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 634
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 2 cut(s) 262, 983
BslI CCNNNNNNNGG 3 cut(s) 175, 1289, 1393
BsmAI GTCTC 6 cut(s) 115, 132, 624, 1028, 1173, 1363
BsmFI GGGAC 2 cut(s) 262, 983
BsnI GGCC 1 cut(s) 92
Bsp119I TTCGAA 2 cut(s) 8, 742
Bsp1286I GDGCHC 1 cut(s) 472
Bsp1407I TGTACA 1 cut(s) 1309
Bsp143I GATC 4 cut(s) 376, 805, 1292, 1348
BspACI CCGC 3 cut(s) 623, 992, 1001
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 6 cut(s) 415, 760, 808, 815, 1384, 1387
BspDI ATCGAT 1 cut(s) 634
BspFNI CGCG 1 cut(s) 1062
BspHI TCATGA 3 cut(s) 697, 838, 1255
BspLI GGNNCC 3 cut(s) 334, 999, 1294
BspMAI CTGCAG 1 cut(s) 711
BspMI ACCTGC 1 cut(s) 985
BspPI GGATC 4 cut(s) 371, 1287, 1300, 1356
BspT104I TTCGAA 2 cut(s) 8, 742
BsrDI GCAATG 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 1309
BsrI ACTGG 2 cut(s) 104, 726
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 259, 1076, 1203
BssMI GATC 4 cut(s) 376, 805, 1292, 1348
BssSI CACGAG 1 cut(s) 826
BssT1I CCWWGG 2 cut(s) 259, 1203
Bst2BI CACGAG 1 cut(s) 826
Bst2UI CCWGG 3 cut(s) 170, 1169, 1284
Bst4CI ACNGT 5 cut(s) 547, 1039, 1056, 1080, 1425
Bst6I CTCTTC 4 cut(s) 5, 53, 100, 259
BstAUI TGTACA 1 cut(s) 1309
BstBI TTCGAA 2 cut(s) 8, 742
BstC8I GCNNGC 4 cut(s) 90, 235, 666, 711
BstDEI CTNAG 7 cut(s) 423, 575, 768, 802, 816, 1374, 1392
BstDSI CCRYGG 1 cut(s) 1076
BstENI CCTNNNNNAGG 2 cut(s) 1287, 1391
BstF5I GGATG 2 cut(s) 394, 1185
BstFNI CGCG 1 cut(s) 1062
BstH2I RGCGCY 2 cut(s) 755, 956
BstHHI GCGC 2 cut(s) 754, 955
BstKTI GATC 4 cut(s) 379, 808, 1295, 1351
BstMAI GTCTC 6 cut(s) 115, 132, 624, 1028, 1173, 1363
BstMBI GATC 4 cut(s) 376, 805, 1292, 1348
BstMWI GCNNNNNNNGC 2 cut(s) 952, 1000
BstNI CCWGG 3 cut(s) 170, 1169, 1284
BstNSI RCATGY 4 cut(s) 237, 404, 668, 1358
BstSCI CCNGG 3 cut(s) 168, 1167, 1282
BstSFI CTRYAG 2 cut(s) 707, 1297
BstSLI GKGCMC 1 cut(s) 472
BstUI CGCG 1 cut(s) 1062
BstX2I RGATCY 3 cut(s) 805, 1292, 1348
BstYI RGATCY 3 cut(s) 805, 1292, 1348
Bsu15I ATCGAT 1 cut(s) 634
BsuRI GGCC 1 cut(s) 92
BsuTUI ATCGAT 1 cut(s) 634
BtgI CCRYGG 1 cut(s) 1076
BtsCI GGATG 2 cut(s) 394, 1185
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 3 cut(s) 464, 543, 1041
BveI ACCTGC 1 cut(s) 985
Cac8I GCNNGC 4 cut(s) 90, 235, 666, 711
CciI TCATGA 3 cut(s) 697, 838, 1255
CfoI GCGC 2 cut(s) 754, 955
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 997
ClaI ATCGAT 1 cut(s) 634
CseI GACGC 1 cut(s) 1051
CsiI ACCWGGT 1 cut(s) 1282
Csp6I GTAC 3 cut(s) 43, 893, 1310
CviJI RGCY 6 cut(s) 92, 297, 646, 725, 870, 1397
CviKI_1 RGCY 6 cut(s) 92, 297, 646, 725, 870, 1397
CviQI GTAC 3 cut(s) 43, 893, 1310
DdeI CTNAG 7 cut(s) 423, 575, 768, 802, 816, 1374, 1392
DpnI GATC 4 cut(s) 378, 807, 1294, 1350
DpnII GATC 4 cut(s) 376, 805, 1292, 1348
DraI TTTAAA 2 cut(s) 679, 964
DraIII CACNNNGTG 1 cut(s) 316
DrdI GACNNNNNNGTC 1 cut(s) 690
DseDI GACNNNNNNGTC 1 cut(s) 690
Eam1104I CTCTTC 4 cut(s) 5, 53, 100, 259
EarI CTCTTC 4 cut(s) 5, 53, 100, 259
Eco130I CCWWGG 2 cut(s) 259, 1203
Eco47I GGWCC 1 cut(s) 997
Eco57I CTGAAG 2 cut(s) 1065, 1383
EcoNI CCTNNNNNAGG 2 cut(s) 1287, 1391
EcoO109I RGGNCCY 1 cut(s) 997
EcoRII CCWGG 3 cut(s) 168, 1167, 1282
EcoT14I CCWWGG 2 cut(s) 259, 1203
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 259, 1203
FalI AAGNNNNNCTT 2 cut(s) 908, 940
FaqI GGGAC 2 cut(s) 262, 983
FauI CCCGC 1 cut(s) 1008
Fnu4HI GCNGC 1 cut(s) 1418
FokI GGATG 2 cut(s) 401, 1172
Fsp4HI GCNGC 1 cut(s) 1418
FspBI CTAG 3 cut(s) 465, 860, 1145
GlaI GCGC 2 cut(s) 753, 954
GluI GCNGC 1 cut(s) 1418
GsaI CCCAGC 1 cut(s) 953
GsuI CTGGAG 2 cut(s) 87, 1190
HaeII RGCGCY 2 cut(s) 755, 956
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 1051
HhaI GCGC 2 cut(s) 754, 955
Hin6I GCGC 2 cut(s) 752, 953
HinP1I GCGC 2 cut(s) 752, 953
HincII GTYRAC 1 cut(s) 1150
HindII GTYRAC 1 cut(s) 1150
HinfI GANTC 4 cut(s) 691, 733, 1087, 1104
HpaII CCGG 1 cut(s) 89
HphI GGTGA 5 cut(s) 700, 1043, 1057, 1274, 1298
Hpy166II GTNNAC 3 cut(s) 420, 1150, 1265
Hpy188I TCNGA 8 cut(s) 484, 760, 805, 1086, 1324, 1363, 1377, 1393
Hpy188III TCNNGA 5 cut(s) 152, 356, 698, 839, 1256
Hpy8I GTNNAC 3 cut(s) 420, 1150, 1265
HpyAV CCTTC 5 cut(s) 26, 32, 264, 362, 1283
HpyCH4III ACNGT 5 cut(s) 547, 1039, 1056, 1080, 1425
HpyCH4IV ACGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 952, 1000
HpyF3I CTNAG 7 cut(s) 423, 575, 768, 802, 816, 1374, 1392
HpySE526I ACGT 1 cut(s) 225
HspAI GCGC 2 cut(s) 752, 953
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 376, 805, 1292, 1348
LmnI GCTCC 2 cut(s) 643, 749
LweI GCATC 4 cut(s) 145, 840, 868, 1332
MabI ACCWGGT 1 cut(s) 1282
MaeI CTAG 3 cut(s) 465, 860, 1145
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 4 cut(s) 541, 898, 1039, 1063
MalI GATC 4 cut(s) 378, 807, 1294, 1350
MboI GATC 4 cut(s) 376, 805, 1292, 1348
MflI RGATCY 3 cut(s) 805, 1292, 1348
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 3 cut(s) 123, 369, 1022
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 1 cut(s) 1302
Mph1103I ATGCAT 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 88
MroXI GAANNNNTTC 2 cut(s) 1103, 1368
MslI CAYNNNNRTG 2 cut(s) 876, 1260
MspA1I CMGCKG 1 cut(s) 1003
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 3 cut(s) 170, 1169, 1284
MvaI CCWGG 3 cut(s) 170, 1169, 1284
MvnI CGCG 1 cut(s) 1062
MwoI GCNNNNNNNGC 2 cut(s) 952, 1000
NaeI GCCGGC 1 cut(s) 90
NdeII GATC 4 cut(s) 376, 805, 1292, 1348
NgoMIV GCCGGC 1 cut(s) 88
NlaIV GGNNCC 3 cut(s) 334, 999, 1294
NmuCI GTSAC 4 cut(s) 541, 898, 1039, 1063
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 4 cut(s) 237, 404, 668, 1358
NspV TTCGAA 2 cut(s) 8, 742
PaeI GCATGC 2 cut(s) 237, 668
PagI TCATGA 3 cut(s) 697, 838, 1255
PciI ACATGT 2 cut(s) 400, 1354
PdiI GCCGGC 1 cut(s) 90
PdmI GAANNNNTTC 2 cut(s) 1103, 1368
PfeI GAWTC 3 cut(s) 733, 1087, 1104
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 1 cut(s) 1419
PleI GAGTC 1 cut(s) 699
PpsI GAGTC 1 cut(s) 699
PpuMI RGGWCCY 1 cut(s) 997
PscI ACATGT 2 cut(s) 400, 1354
Psp5II RGGWCCY 1 cut(s) 997
Psp6I CCWGG 3 cut(s) 168, 1167, 1282
PspFI CCCAGC 1 cut(s) 949
PspGI CCWGG 3 cut(s) 168, 1167, 1282
PspN4I GGNNCC 3 cut(s) 334, 999, 1294
PspPI GGNCC 1 cut(s) 997
PspPPI RGGWCCY 1 cut(s) 997
PstI CTGCAG 1 cut(s) 711
PsuI RGATCY 3 cut(s) 805, 1292, 1348
RsaI GTAC 3 cut(s) 44, 894, 1311
RsaNI GTAC 3 cut(s) 43, 893, 1310
RseI CAYNNNNRTG 2 cut(s) 876, 1260
SatI GCNGC 1 cut(s) 1418
Sau3AI GATC 4 cut(s) 376, 805, 1292, 1348
Sau96I GGNCC 1 cut(s) 997
SbfI CCTGCAGG 1 cut(s) 711
ScaI AGTACT 1 cut(s) 894
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 3 cut(s) 170, 1169, 1284
SdaI CCTGCAGG 1 cut(s) 711
SduI GDGCHC 1 cut(s) 472
SexAI ACCWGGT 1 cut(s) 1282
SfaNI GCATC 4 cut(s) 145, 840, 868, 1332
SfcI CTRYAG 2 cut(s) 707, 1297
SfuI TTCGAA 2 cut(s) 8, 742
SinI GGWCC 1 cut(s) 997
SmiMI CAYNNNNRTG 2 cut(s) 876, 1260
SpeI ACTAGT 1 cut(s) 1144
SphI GCATGC 2 cut(s) 237, 668
Sse8387I CCTGCAGG 1 cut(s) 711
Sse9I AATT 3 cut(s) 123, 369, 1022
SsiI CCGC 3 cut(s) 623, 992, 1001
SspI AATATT 2 cut(s) 254, 1249
SspMI CTAG 3 cut(s) 465, 860, 1145
StyD4I CCNGG 3 cut(s) 168, 1167, 1282
StyI CCWWGG 2 cut(s) 259, 1203
TaaI ACNGT 5 cut(s) 547, 1039, 1056, 1080, 1425
TaiI ACGT 1 cut(s) 228
TaqI TCGA 6 cut(s) 8, 56, 215, 397, 634, 742
TasI AATT 3 cut(s) 123, 369, 1022
TatI WGTACW 2 cut(s) 892, 1309
TfiI GAWTC 3 cut(s) 733, 1087, 1104
TscAI CASTG 3 cut(s) 464, 550, 1048
TseFI GTSAC 4 cut(s) 541, 898, 1039, 1063
TseI GCWGC 1 cut(s) 1417
Tsp45I GTSAC 4 cut(s) 541, 898, 1039, 1063
TspRI CASTG 3 cut(s) 464, 550, 1048
Van91I CCANNNNNTGG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 997
XagI CCTNNNNNAGG 2 cut(s) 1287, 1391
XapI RAATTY 2 cut(s) 123, 1022
XceI RCATGY 4 cut(s) 237, 404, 668, 1358
XmnI GAANNNNTTC 2 cut(s) 1103, 1368
XspI CTAG 3 cut(s) 465, 860, 1145
ZrmI AGTACT 1 cut(s) 894
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.