Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002617

Physical Location & Seq

Genomic Coordinates Forward (+)

55847857 .. 55848369

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0390700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCATCAGAATCCGGTAACGTCCTCCTCCGGCGAGCCCAGGCTCATGTCGTTCTCCTCCCAAGCGCCGGCATGGGCCATCTGACACCCTTTCTACGACTTGCGGCATTGCTATCCCAAAACCACCGCTGCCAGCTGACCCTCATCACCACTCACCCCACCGTCTCACTCGCCGAGCCTTCTCTCATCTCTCGCTTCCTCTCAGCTTTCCCTCGCGTCACTCAACTCCATTTCCACCTCCTTCCTCTGGACTCCACCACCGTCAACTCAACCGACCCCTTTTTCCTCAGATTCGAAGCCATTCGCCGCTCCGCTCATCTCCTCTCCCCCCTGCTCTCCTCTCTTTCCTCGCCTCCCTCTGCTCTCGTTTATGACGTGAGCTTAATATCTCCTGTCCTCACCGTCATTGAAGCTCTTTTGGTTTCGCCTTCCTGCATACATTTTCTTCACCTCCTCGGCCAGAATGCTCTCCCTCTTTTCTTACTACCACGTGGTGGCAACCACATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

170

Amino Acids

18.52

Weight (kDa)

9.66

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22285 AT4G22285 AT4G22350 AT4G22350 AT4G22350 AT4G22350 AT4G22410 AT4G22410
fragaria_vesca	FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_3g00980 FvH4_6g03150
malus_domestica	MD05G1357700.v1.1 MD10G1331700.v1.1
prunus_persica	Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1 Prupe.4G010400_v2.0.a1
pyrus_communis	pycom05g32360 pycom10g28130
rosa_chinensis	RchiOBHm_Chr4g0397451 RchiOBHm_Chr5g0001501 RchiOBHm_Chr5g0001511
rosa_laevigata	RLG00000030934
rosa_multiflora	Rmu_sc0003749.1_g000009
rosa_roxburghii	Rroxscaffold_1G00074880
rosa_rugosa	Rorug04G0390700
rosa_samantha	Rh5AG011700 Rh5BG014200 Rh5CG012700 Rh5DG012000
rosa_wichuraiana	Rw5G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccBSI	CCGCTC	2 cut(s)	309, 314
AccII	CGCG	1 cut(s)	216
AciI	CCGC	4 cut(s)	104, 127, 307, 312
AcoI	YGGCCR	1 cut(s)	457
AcvI	CACGTG	1 cut(s)	491
AdeI	CACNNNGTG	2 cut(s)	494, 508
AfiI	CCNNNNNNNGG	3 cut(s)	68, 247, 494
AgsI	TTSAA	1 cut(s)	410
AjiI	CACGTC	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	4 cut(s)	136, 206, 381, 413
AluI	AGCT	4 cut(s)	136, 206, 381, 413
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	2 cut(s)	76, 457
ApeKI	GCWGC	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	4 cut(s)	139, 146, 391, 440
AsuII	TTCGAA	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	40
BbrPI	CACGTG	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	169
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	3 cut(s)	105, 130, 307
BlsI	GCNGC	3 cut(s)	106, 131, 308
Bme1390I	CCNGG	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	39, 454
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 247, 494
Bse118I	RCCGGY	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	39, 454
BseLI	CCNNNNNNNGG	3 cut(s)	68, 247, 494
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	216, 301
BseRI	GAGGAG	5 cut(s)	17, 47, 311, 328, 443
BseXI	GCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	78, 459
BsiSI	CCGG	3 cut(s)	15, 31, 69
BslI	CCNNNNNNNGG	3 cut(s)	68, 247, 494
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	78, 459
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	40
BspACI	CCGC	4 cut(s)	104, 127, 307, 312
BspANI	GGCC	2 cut(s)	78, 459
BspCNI	CTCAG	2 cut(s)	215, 300
BspFNI	CGCG	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	294
BsrBI	CCGCTC	2 cut(s)	309, 314
BsrDI	GCAATG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	39, 454
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	3 cut(s)	163, 262, 403
BstBAI	YACGTR	1 cut(s)	491
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	3 cut(s)	36, 70, 134
BstDEI	CTNAG	2 cut(s)	202, 287
BstFNI	CGCG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	78, 459
BtrI	CACGTC	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	36, 70, 134
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	205
CviAII	CATG	2 cut(s)	47, 73
DdeI	CTNAG	2 cut(s)	202, 287
DraIII	CACNNNGTG	2 cut(s)	494, 508
EaeI	YGGCCR	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	40
Eco72I	CACGTG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	2 cut(s)	50, 76
FaiI	YATR	4 cut(s)	48, 74, 372, 437
FatI	CATG	2 cut(s)	46, 72
Fnu4HI	GCNGC	3 cut(s)	105, 130, 307
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	3 cut(s)	105, 130, 307
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	105, 130, 307
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	78, 459
HapII	CCGG	3 cut(s)	15, 31, 69
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	50, 76
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	11, 251, 291
HpaII	CCGG	3 cut(s)	15, 31, 69
HphI	GGTGA	4 cut(s)	139, 146, 391, 440
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	10, 84, 290
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	189, 251, 438
HpyCH4III	ACNGT	3 cut(s)	163, 262, 403
HpyCH4IV	ACGT	3 cut(s)	21, 375, 490
HpyCH4V	TGCA	1 cut(s)	435
HpyF3I	CTNAG	2 cut(s)	202, 287
HpySE526I	ACGT	3 cut(s)	21, 375, 490
Hsp92II	CATG	2 cut(s)	50, 76
HspAI	GCGC	1 cut(s)	66
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	1 cut(s)	116
MaeII	ACGT	3 cut(s)	21, 375, 490
MaeIII	GTNAC	2 cut(s)	17, 217
MbiI	CCGCTC	2 cut(s)	309, 314
MboII	GAAGA	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	245
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	1 cut(s)	383
MspA1I	CMGCKG	2 cut(s)	129, 136
MspI	CCGG	3 cut(s)	15, 31, 69
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	216
NaeI	GCCGGC	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	2 cut(s)	50, 76
NmeAIII	GCCGAG	2 cut(s)	199, 435
NmuCI	GTSAC	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	1 cut(s)	469
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	11, 291
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	3 cut(s)	106, 131, 308
PleI	GAGTC	1 cut(s)	245
PmaCI	CACGTG	1 cut(s)	491
PmlI	CACGTG	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	245
Ppu21I	YACGTR	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	3 cut(s)	105, 130, 307
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	9 cut(s)	24, 138, 208, 240, 378, 383, 415, 453, 493
SfuI	TTCGAA	1 cut(s)	294
SsiI	CCGC	4 cut(s)	104, 127, 307, 312
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	163, 262, 403
TaiI	ACGT	3 cut(s)	24, 378, 493
TaqI	TCGA	1 cut(s)	294
TauI	GCSGC	2 cut(s)	107, 309
TfiI	GAWTC	2 cut(s)	11, 291
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.